Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1MJI:C20:C13
Extra
PDB:
ATOM 1 O3' A A 19 17.569 -0.578 25.675 1.00 15.45 O
ATOM 2 P A A 20 18.396 -1.480 26.719 1.00 15.64 P
ATOM 3 OP1 A A 20 18.233 -0.887 28.074 1.00 15.75 O
ATOM 4 OP2 A A 20 19.763 -1.737 26.181 1.00 16.73 O
ATOM 5 O5' A A 20 17.617 -2.861 26.751 1.00 16.27 O
ATOM 6 C5' A A 20 16.400 -2.990 27.461 1.00 14.75 C
ATOM 7 C4' A A 20 15.871 -4.380 27.284 1.00 14.63 C
ATOM 8 O4' A A 20 15.712 -4.615 25.861 1.00 12.82 O
ATOM 9 C3' A A 20 16.831 -5.474 27.709 1.00 16.15 C
ATOM 10 O3' A A 20 16.732 -5.718 29.106 1.00 19.41 O
ATOM 11 C2' A A 20 16.327 -6.657 26.895 1.00 15.51 C
ATOM 12 O2' A A 20 15.168 -7.230 27.448 1.00 18.35 O
ATOM 13 C1' A A 20 15.983 -5.978 25.568 1.00 13.93 C
ATOM 14 N9 A A 20 17.079 -6.042 24.599 1.00 12.86 N
ATOM 15 C8 A A 20 17.951 -5.049 24.222 1.00 12.67 C
ATOM 16 N7 A A 20 18.852 -5.437 23.350 1.00 12.09 N
ATOM 17 C5 A A 20 18.547 -6.773 23.130 1.00 11.65 C
ATOM 18 C6 A A 20 19.134 -7.750 22.317 1.00 10.93 C
ATOM 19 N6 A A 20 20.192 -7.522 21.541 1.00 11.26 N
ATOM 20 N1 A A 20 18.593 -8.985 22.328 1.00 9.13 N
ATOM 21 C2 A A 20 17.526 -9.213 23.112 1.00 10.35 C
ATOM 22 N3 A A 20 16.885 -8.379 23.924 1.00 10.29 N
ATOM 23 C4 A A 20 17.453 -7.158 23.887 1.00 11.46 C
ATOM 24 P C A 21 18.058 -6.006 29.969 1.00 19.66 P
ATOM 25 OP1 C A 21 17.638 -6.118 31.382 1.00 21.83 O
ATOM 26 OP2 C A 21 19.090 -5.020 29.583 1.00 22.09 O
ATOM 27 O5' C A 21 18.526 -7.443 29.496 1.00 19.40 O
TER
ATOM 1 O3' C B 12 23.120 -17.294 22.784 1.00 37.92 O
ATOM 2 P A B 13 22.210 -17.436 21.469 1.00 39.87 P
ATOM 3 OP1 A B 13 21.214 -18.506 21.719 1.00 40.74 O
ATOM 4 OP2 A B 13 23.093 -17.506 20.276 1.00 39.79 O
ATOM 5 O5' A B 13 21.403 -16.069 21.407 1.00 37.21 O
ATOM 6 C5' A B 13 20.514 -15.711 22.452 1.00 32.70 C
ATOM 7 C4' A B 13 20.093 -14.267 22.309 1.00 29.96 C
ATOM 8 O4' A B 13 21.258 -13.408 22.360 1.00 27.97 O
ATOM 9 C3' A B 13 19.411 -13.882 21.012 1.00 27.99 C
ATOM 10 O3' A B 13 18.035 -14.200 21.128 1.00 30.42 O
ATOM 11 C2' A B 13 19.617 -12.376 20.996 1.00 27.10 C
ATOM 12 O2' A B 13 18.722 -11.719 21.864 1.00 29.11 O
ATOM 13 C1' A B 13 21.019 -12.255 21.588 1.00 25.07 C
ATOM 14 N9 A B 13 22.066 -12.158 20.584 1.00 23.90 N
ATOM 15 C8 A B 13 22.877 -13.144 20.087 1.00 23.08 C
ATOM 16 N7 A B 13 23.726 -12.719 19.186 1.00 25.22 N
ATOM 17 C5 A B 13 23.449 -11.358 19.082 1.00 25.48 C
ATOM 18 C6 A B 13 23.999 -10.328 18.294 1.00 26.35 C
ATOM 19 N6 A B 13 24.979 -10.513 17.417 1.00 29.97 N
ATOM 20 N1 A B 13 23.498 -9.084 18.443 1.00 26.53 N
ATOM 21 C2 A B 13 22.513 -8.894 19.324 1.00 25.36 C
ATOM 22 N3 A B 13 21.911 -9.776 20.113 1.00 25.20 N
ATOM 23 C4 A B 13 22.433 -11.004 19.941 1.00 24.75 C
ATOM 24 P U B 14 17.163 -14.492 19.818 1.00 31.53 P
ATOM 25 OP1 U B 14 16.095 -15.434 20.217 1.00 31.01 O
ATOM 26 OP2 U B 14 18.094 -14.865 18.727 1.00 33.68 O
ATOM 27 O5' U B 14 16.515 -13.077 19.480 1.00 30.81 O
TER
ATOM 2 P A A 20 18.396 -1.480 26.719 1.00 15.64 P
ATOM 3 OP1 A A 20 18.233 -0.887 28.074 1.00 15.75 O
ATOM 4 OP2 A A 20 19.763 -1.737 26.181 1.00 16.73 O
ATOM 5 O5' A A 20 17.617 -2.861 26.751 1.00 16.27 O
ATOM 6 C5' A A 20 16.400 -2.990 27.461 1.00 14.75 C
ATOM 7 C4' A A 20 15.871 -4.380 27.284 1.00 14.63 C
ATOM 8 O4' A A 20 15.712 -4.615 25.861 1.00 12.82 O
ATOM 9 C3' A A 20 16.831 -5.474 27.709 1.00 16.15 C
ATOM 10 O3' A A 20 16.732 -5.718 29.106 1.00 19.41 O
ATOM 11 C2' A A 20 16.327 -6.657 26.895 1.00 15.51 C
ATOM 12 O2' A A 20 15.168 -7.230 27.448 1.00 18.35 O
ATOM 13 C1' A A 20 15.983 -5.978 25.568 1.00 13.93 C
ATOM 14 N9 A A 20 17.079 -6.042 24.599 1.00 12.86 N
ATOM 15 C8 A A 20 17.951 -5.049 24.222 1.00 12.67 C
ATOM 16 N7 A A 20 18.852 -5.437 23.350 1.00 12.09 N
ATOM 17 C5 A A 20 18.547 -6.773 23.130 1.00 11.65 C
ATOM 18 C6 A A 20 19.134 -7.750 22.317 1.00 10.93 C
ATOM 19 N6 A A 20 20.192 -7.522 21.541 1.00 11.26 N
ATOM 20 N1 A A 20 18.593 -8.985 22.328 1.00 9.13 N
ATOM 21 C2 A A 20 17.526 -9.213 23.112 1.00 10.35 C
ATOM 22 N3 A A 20 16.885 -8.379 23.924 1.00 10.29 N
ATOM 23 C4 A A 20 17.453 -7.158 23.887 1.00 11.46 C
ATOM 24 P C A 21 18.058 -6.006 29.969 1.00 19.66 P
ATOM 25 OP1 C A 21 17.638 -6.118 31.382 1.00 21.83 O
ATOM 26 OP2 C A 21 19.090 -5.020 29.583 1.00 22.09 O
ATOM 27 O5' C A 21 18.526 -7.443 29.496 1.00 19.40 O
TER
ATOM 1 O3' C B 12 23.120 -17.294 22.784 1.00 37.92 O
ATOM 2 P A B 13 22.210 -17.436 21.469 1.00 39.87 P
ATOM 3 OP1 A B 13 21.214 -18.506 21.719 1.00 40.74 O
ATOM 4 OP2 A B 13 23.093 -17.506 20.276 1.00 39.79 O
ATOM 5 O5' A B 13 21.403 -16.069 21.407 1.00 37.21 O
ATOM 6 C5' A B 13 20.514 -15.711 22.452 1.00 32.70 C
ATOM 7 C4' A B 13 20.093 -14.267 22.309 1.00 29.96 C
ATOM 8 O4' A B 13 21.258 -13.408 22.360 1.00 27.97 O
ATOM 9 C3' A B 13 19.411 -13.882 21.012 1.00 27.99 C
ATOM 10 O3' A B 13 18.035 -14.200 21.128 1.00 30.42 O
ATOM 11 C2' A B 13 19.617 -12.376 20.996 1.00 27.10 C
ATOM 12 O2' A B 13 18.722 -11.719 21.864 1.00 29.11 O
ATOM 13 C1' A B 13 21.019 -12.255 21.588 1.00 25.07 C
ATOM 14 N9 A B 13 22.066 -12.158 20.584 1.00 23.90 N
ATOM 15 C8 A B 13 22.877 -13.144 20.087 1.00 23.08 C
ATOM 16 N7 A B 13 23.726 -12.719 19.186 1.00 25.22 N
ATOM 17 C5 A B 13 23.449 -11.358 19.082 1.00 25.48 C
ATOM 18 C6 A B 13 23.999 -10.328 18.294 1.00 26.35 C
ATOM 19 N6 A B 13 24.979 -10.513 17.417 1.00 29.97 N
ATOM 20 N1 A B 13 23.498 -9.084 18.443 1.00 26.53 N
ATOM 21 C2 A B 13 22.513 -8.894 19.324 1.00 25.36 C
ATOM 22 N3 A B 13 21.911 -9.776 20.113 1.00 25.20 N
ATOM 23 C4 A B 13 22.433 -11.004 19.941 1.00 24.75 C
ATOM 24 P U B 14 17.163 -14.492 19.818 1.00 31.53 P
ATOM 25 OP1 U B 14 16.095 -15.434 20.217 1.00 31.01 O
ATOM 26 OP2 U B 14 18.094 -14.865 18.727 1.00 33.68 O
ATOM 27 O5' U B 14 16.515 -13.077 19.480 1.00 30.81 O
TER
Atoms:
OP1: (18.233,-0.887,28.074)
OP2: (19.763,-1.737,26.181)
C3': (16.831,-5.474,27.709)
C1': (15.983,-5.978,25.568)
C5': (16.400,-2.990,27.461)
O4': (15.712,-4.615,25.861)
C8: (17.951,-5.049,24.222)
O2': (15.168,-7.230,27.448)
C6: (19.134,-7.750,22.317)
C5: (18.547,-6.773,23.130)
C4: (17.453,-7.158,23.887)
P: (18.396,-1.480,26.719)
C4': (15.871,-4.380,27.284)
C2': (16.327,-6.657,26.895)
C2: (17.526,-9.213,23.112)
N1: (18.593,-8.985,22.328)
N3: (16.885,-8.379,23.924)
N6: (20.192,-7.522,21.541)
N7: (18.852,-5.437,23.350)
N9: (17.079,-6.042,24.599)
O5': (17.617,-2.861,26.751)
O3': (16.732,-5.718,29.106)
OP2: (19.763,-1.737,26.181)
C3': (16.831,-5.474,27.709)
C1': (15.983,-5.978,25.568)
C5': (16.400,-2.990,27.461)
O4': (15.712,-4.615,25.861)
C8: (17.951,-5.049,24.222)
O2': (15.168,-7.230,27.448)
C6: (19.134,-7.750,22.317)
C5: (18.547,-6.773,23.130)
C4: (17.453,-7.158,23.887)
P: (18.396,-1.480,26.719)
C4': (15.871,-4.380,27.284)
C2': (16.327,-6.657,26.895)
C2: (17.526,-9.213,23.112)
N1: (18.593,-8.985,22.328)
N3: (16.885,-8.379,23.924)
N6: (20.192,-7.522,21.541)
N7: (18.852,-5.437,23.350)
N9: (17.079,-6.042,24.599)
O5': (17.617,-2.861,26.751)
O3': (16.732,-5.718,29.106)
OP1: (21.214,-18.506,21.719)
OP2: (23.093,-17.506,20.276)
C3': (19.411,-13.882,21.012)
C1': (21.019,-12.255,21.588)
C5': (20.514,-15.711,22.452)
O4': (21.258,-13.408,22.360)
C8: (22.877,-13.144,20.087)
O2': (18.722,-11.719,21.864)
C6: (23.999,-10.328,18.294)
C5: (23.449,-11.358,19.082)
C4: (22.433,-11.004,19.941)
P: (22.210,-17.436,21.469)
C4': (20.093,-14.267,22.309)
C2': (19.617,-12.376,20.996)
C2: (22.513,-8.894,19.324)
N1: (23.498,-9.084,18.443)
N3: (21.911,-9.776,20.113)
N6: (24.979,-10.513,17.417)
N7: (23.726,-12.719,19.186)
N9: (22.066,-12.158,20.584)
O5': (21.403,-16.069,21.407)
O3': (18.035,-14.200,21.128)
OP2: (23.093,-17.506,20.276)
C3': (19.411,-13.882,21.012)
C1': (21.019,-12.255,21.588)
C5': (20.514,-15.711,22.452)
O4': (21.258,-13.408,22.360)
C8: (22.877,-13.144,20.087)
O2': (18.722,-11.719,21.864)
C6: (23.999,-10.328,18.294)
C5: (23.449,-11.358,19.082)
C4: (22.433,-11.004,19.941)
P: (22.210,-17.436,21.469)
C4': (20.093,-14.267,22.309)
C2': (19.617,-12.376,20.996)
C2: (22.513,-8.894,19.324)
N1: (23.498,-9.084,18.443)
N3: (21.911,-9.776,20.113)
N6: (24.979,-10.513,17.417)
N7: (23.726,-12.719,19.186)
N9: (22.066,-12.158,20.584)
O5': (21.403,-16.069,21.407)
O3': (18.035,-14.200,21.128)
Image (generated by PyMOL):