Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0913:01002
Extra
PDB:
ATOM 1 O3' C A 912 55.598 94.723 71.319 1.00 33.39 O
ATOM 2 P A A 913 54.200 93.941 71.275 1.00 35.41 P
ATOM 3 OP1 A A 913 53.481 94.433 70.075 1.00 33.32 O
ATOM 4 OP2 A A 913 53.538 94.007 72.606 1.00 34.05 O
ATOM 5 O5' A A 913 54.651 92.440 71.009 1.00 33.83 O
ATOM 6 C5' A A 913 55.416 92.113 69.843 1.00 32.95 C
ATOM 7 C4' A A 913 56.091 90.784 70.024 1.00 31.70 C
ATOM 8 O4' A A 913 57.063 90.877 71.088 1.00 30.56 O
ATOM 9 C3' A A 913 55.178 89.663 70.470 1.00 32.56 C
ATOM 10 O3' A A 913 54.486 89.102 69.373 1.00 34.96 O
ATOM 11 C2' A A 913 56.164 88.692 71.079 1.00 31.01 C
ATOM 12 O2' A A 913 56.875 88.028 70.061 1.00 30.74 O
ATOM 13 C1' A A 913 57.105 89.657 71.798 1.00 29.58 C
ATOM 14 N9 A A 913 56.723 89.918 73.186 1.00 27.77 N
ATOM 15 C8 A A 913 56.040 90.989 73.707 1.00 26.11 C
ATOM 16 N7 A A 913 55.866 90.922 75.003 1.00 25.05 N
ATOM 17 C5 A A 913 56.471 89.723 75.359 1.00 26.14 C
ATOM 18 C6 A A 913 56.618 89.058 76.592 1.00 25.95 C
ATOM 19 N6 A A 913 56.158 89.524 77.750 1.00 27.34 N
ATOM 20 N1 A A 913 57.261 87.876 76.594 1.00 25.69 N
ATOM 21 C2 A A 913 57.727 87.399 75.439 1.00 26.51 C
ATOM 22 N3 A A 913 57.654 87.923 74.224 1.00 27.32 N
ATOM 23 C4 A A 913 57.003 89.099 74.251 1.00 26.97 C
ATOM 24 P U A 914 52.982 88.596 69.569 1.00 37.74 P
ATOM 25 OP1 U A 914 52.407 88.402 68.214 1.00 37.23 O
ATOM 26 OP2 U A 914 52.299 89.510 70.527 1.00 34.53 O
ATOM 27 O5' U A 914 53.175 87.187 70.286 1.00 35.60 O
TER
ATOM 1 O3' U B1001 48.987 96.675 82.541 1.00 28.56 O
ATOM 2 P C B1002 50.520 97.122 82.686 1.00 30.48 P
ATOM 3 OP1 C B1002 50.696 97.804 83.986 1.00 28.08 O
ATOM 4 OP2 C B1002 50.940 97.792 81.440 1.00 32.16 O
ATOM 5 O5' C B1002 51.300 95.746 82.733 1.00 30.47 O
ATOM 6 C5' C B1002 51.056 94.814 83.782 1.00 30.09 C
ATOM 7 C4' C B1002 52.091 93.736 83.745 1.00 30.40 C
ATOM 8 O4' C B1002 51.906 92.939 82.560 1.00 29.03 O
ATOM 9 C3' C B1002 53.508 94.244 83.587 1.00 30.60 C
ATOM 10 O3' C B1002 53.984 94.697 84.848 1.00 32.69 O
ATOM 11 C2' C B1002 54.227 92.998 83.078 1.00 30.67 C
ATOM 12 O2' C B1002 54.535 92.092 84.112 1.00 35.00 O
ATOM 13 C1' C B1002 53.141 92.349 82.216 1.00 29.99 C
ATOM 14 N1 C B1002 53.330 92.456 80.762 1.00 30.77 N
ATOM 15 C2 C B1002 54.148 91.522 80.129 1.00 30.73 C
ATOM 16 O2 C B1002 54.726 90.666 80.817 1.00 31.41 O
ATOM 17 N3 C B1002 54.296 91.579 78.784 1.00 30.16 N
ATOM 18 C4 C B1002 53.678 92.531 78.081 1.00 28.96 C
ATOM 19 N4 C B1002 53.848 92.537 76.758 1.00 28.86 N
ATOM 20 C5 C B1002 52.859 93.513 78.704 1.00 28.75 C
ATOM 21 C6 C B1002 52.711 93.440 80.033 1.00 30.63 C
ATOM 22 P C B1003 55.186 95.754 84.926 1.00 34.22 P
ATOM 23 OP1 C B1003 55.869 95.835 83.616 1.00 36.14 O
ATOM 24 OP2 C B1003 55.954 95.356 86.130 1.00 35.41 O
ATOM 25 O5' C B1003 54.504 97.172 85.203 1.00 35.01 O
TER
ATOM 2 P A A 913 54.200 93.941 71.275 1.00 35.41 P
ATOM 3 OP1 A A 913 53.481 94.433 70.075 1.00 33.32 O
ATOM 4 OP2 A A 913 53.538 94.007 72.606 1.00 34.05 O
ATOM 5 O5' A A 913 54.651 92.440 71.009 1.00 33.83 O
ATOM 6 C5' A A 913 55.416 92.113 69.843 1.00 32.95 C
ATOM 7 C4' A A 913 56.091 90.784 70.024 1.00 31.70 C
ATOM 8 O4' A A 913 57.063 90.877 71.088 1.00 30.56 O
ATOM 9 C3' A A 913 55.178 89.663 70.470 1.00 32.56 C
ATOM 10 O3' A A 913 54.486 89.102 69.373 1.00 34.96 O
ATOM 11 C2' A A 913 56.164 88.692 71.079 1.00 31.01 C
ATOM 12 O2' A A 913 56.875 88.028 70.061 1.00 30.74 O
ATOM 13 C1' A A 913 57.105 89.657 71.798 1.00 29.58 C
ATOM 14 N9 A A 913 56.723 89.918 73.186 1.00 27.77 N
ATOM 15 C8 A A 913 56.040 90.989 73.707 1.00 26.11 C
ATOM 16 N7 A A 913 55.866 90.922 75.003 1.00 25.05 N
ATOM 17 C5 A A 913 56.471 89.723 75.359 1.00 26.14 C
ATOM 18 C6 A A 913 56.618 89.058 76.592 1.00 25.95 C
ATOM 19 N6 A A 913 56.158 89.524 77.750 1.00 27.34 N
ATOM 20 N1 A A 913 57.261 87.876 76.594 1.00 25.69 N
ATOM 21 C2 A A 913 57.727 87.399 75.439 1.00 26.51 C
ATOM 22 N3 A A 913 57.654 87.923 74.224 1.00 27.32 N
ATOM 23 C4 A A 913 57.003 89.099 74.251 1.00 26.97 C
ATOM 24 P U A 914 52.982 88.596 69.569 1.00 37.74 P
ATOM 25 OP1 U A 914 52.407 88.402 68.214 1.00 37.23 O
ATOM 26 OP2 U A 914 52.299 89.510 70.527 1.00 34.53 O
ATOM 27 O5' U A 914 53.175 87.187 70.286 1.00 35.60 O
TER
ATOM 1 O3' U B1001 48.987 96.675 82.541 1.00 28.56 O
ATOM 2 P C B1002 50.520 97.122 82.686 1.00 30.48 P
ATOM 3 OP1 C B1002 50.696 97.804 83.986 1.00 28.08 O
ATOM 4 OP2 C B1002 50.940 97.792 81.440 1.00 32.16 O
ATOM 5 O5' C B1002 51.300 95.746 82.733 1.00 30.47 O
ATOM 6 C5' C B1002 51.056 94.814 83.782 1.00 30.09 C
ATOM 7 C4' C B1002 52.091 93.736 83.745 1.00 30.40 C
ATOM 8 O4' C B1002 51.906 92.939 82.560 1.00 29.03 O
ATOM 9 C3' C B1002 53.508 94.244 83.587 1.00 30.60 C
ATOM 10 O3' C B1002 53.984 94.697 84.848 1.00 32.69 O
ATOM 11 C2' C B1002 54.227 92.998 83.078 1.00 30.67 C
ATOM 12 O2' C B1002 54.535 92.092 84.112 1.00 35.00 O
ATOM 13 C1' C B1002 53.141 92.349 82.216 1.00 29.99 C
ATOM 14 N1 C B1002 53.330 92.456 80.762 1.00 30.77 N
ATOM 15 C2 C B1002 54.148 91.522 80.129 1.00 30.73 C
ATOM 16 O2 C B1002 54.726 90.666 80.817 1.00 31.41 O
ATOM 17 N3 C B1002 54.296 91.579 78.784 1.00 30.16 N
ATOM 18 C4 C B1002 53.678 92.531 78.081 1.00 28.96 C
ATOM 19 N4 C B1002 53.848 92.537 76.758 1.00 28.86 N
ATOM 20 C5 C B1002 52.859 93.513 78.704 1.00 28.75 C
ATOM 21 C6 C B1002 52.711 93.440 80.033 1.00 30.63 C
ATOM 22 P C B1003 55.186 95.754 84.926 1.00 34.22 P
ATOM 23 OP1 C B1003 55.869 95.835 83.616 1.00 36.14 O
ATOM 24 OP2 C B1003 55.954 95.356 86.130 1.00 35.41 O
ATOM 25 O5' C B1003 54.504 97.172 85.203 1.00 35.01 O
TER
Atoms:
OP1: (53.481,94.433,70.075)
OP2: (53.538,94.007,72.606)
C3': (55.178,89.663,70.470)
C1': (57.105,89.657,71.798)
C5': (55.416,92.113,69.843)
O4': (57.063,90.877,71.088)
C8: (56.040,90.989,73.707)
O2': (56.875,88.028,70.061)
C6: (56.618,89.058,76.592)
C5: (56.471,89.723,75.359)
C4: (57.003,89.099,74.251)
P: (54.200,93.941,71.275)
C4': (56.091,90.784,70.024)
C2': (56.164,88.692,71.079)
C2: (57.727,87.399,75.439)
N1: (57.261,87.876,76.594)
N3: (57.654,87.923,74.224)
N6: (56.158,89.524,77.750)
N7: (55.866,90.922,75.003)
N9: (56.723,89.918,73.186)
O5': (54.651,92.440,71.009)
O3': (54.486,89.102,69.373)
OP2: (53.538,94.007,72.606)
C3': (55.178,89.663,70.470)
C1': (57.105,89.657,71.798)
C5': (55.416,92.113,69.843)
O4': (57.063,90.877,71.088)
C8: (56.040,90.989,73.707)
O2': (56.875,88.028,70.061)
C6: (56.618,89.058,76.592)
C5: (56.471,89.723,75.359)
C4: (57.003,89.099,74.251)
P: (54.200,93.941,71.275)
C4': (56.091,90.784,70.024)
C2': (56.164,88.692,71.079)
C2: (57.727,87.399,75.439)
N1: (57.261,87.876,76.594)
N3: (57.654,87.923,74.224)
N6: (56.158,89.524,77.750)
N7: (55.866,90.922,75.003)
N9: (56.723,89.918,73.186)
O5': (54.651,92.440,71.009)
O3': (54.486,89.102,69.373)
C2: (54.148,91.522,80.129)
OP1: (50.696,97.804,83.986)
OP2: (50.940,97.792,81.440)
C4: (53.678,92.531,78.081)
O5': (51.300,95.746,82.733)
C3': (53.508,94.244,83.587)
C1': (53.141,92.349,82.216)
O4': (51.906,92.939,82.560)
C5': (51.056,94.814,83.782)
P: (50.520,97.122,82.686)
O2: (54.726,90.666,80.817)
C4': (52.091,93.736,83.745)
C2': (54.227,92.998,83.078)
O2': (54.535,92.092,84.112)
N1: (53.330,92.456,80.762)
N3: (54.296,91.579,78.784)
N4: (53.848,92.537,76.758)
C6: (52.711,93.440,80.033)
C5: (52.859,93.513,78.704)
O3': (53.984,94.697,84.848)
OP1: (50.696,97.804,83.986)
OP2: (50.940,97.792,81.440)
C4: (53.678,92.531,78.081)
O5': (51.300,95.746,82.733)
C3': (53.508,94.244,83.587)
C1': (53.141,92.349,82.216)
O4': (51.906,92.939,82.560)
C5': (51.056,94.814,83.782)
P: (50.520,97.122,82.686)
O2: (54.726,90.666,80.817)
C4': (52.091,93.736,83.745)
C2': (54.227,92.998,83.078)
O2': (54.535,92.092,84.112)
N1: (53.330,92.456,80.762)
N3: (54.296,91.579,78.784)
N4: (53.848,92.537,76.758)
C6: (52.711,93.440,80.033)
C5: (52.859,93.513,78.704)
O3': (53.984,94.697,84.848)
Image (generated by PyMOL):