Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A237:A254
Extra
PDB:
ATOM 1 O3' A A 236 85.672 123.318 -8.624 1.00 67.37 O
ATOM 2 P G A 237 85.447 124.659 -7.751 1.00 68.81 P
ATOM 3 OP1 G A 237 84.007 125.032 -7.817 1.00 66.98 O
ATOM 4 OP2 G A 237 86.478 125.650 -8.158 1.00 67.92 O
ATOM 5 O5' G A 237 85.750 124.219 -6.250 1.00 68.78 O
ATOM 6 C5' G A 237 85.010 123.152 -5.629 1.00 68.18 C
ATOM 7 C4' G A 237 85.143 123.228 -4.124 1.00 68.14 C
ATOM 8 O4' G A 237 86.532 123.045 -3.723 1.00 68.25 O
ATOM 9 C3' G A 237 84.744 124.551 -3.496 1.00 67.80 C
ATOM 10 O3' G A 237 83.336 124.665 -3.324 1.00 66.89 O
ATOM 11 C2' G A 237 85.488 124.510 -2.170 1.00 68.44 C
ATOM 12 O2' G A 237 84.820 123.724 -1.205 1.00 68.91 O
ATOM 13 C1' G A 237 86.810 123.850 -2.584 1.00 68.08 C
ATOM 14 N9 G A 237 87.838 124.826 -2.952 1.00 67.87 N
ATOM 15 C8 G A 237 88.289 125.098 -4.220 1.00 68.20 C
ATOM 16 N7 G A 237 89.192 126.042 -4.255 1.00 68.22 N
ATOM 17 C5 G A 237 89.359 126.413 -2.929 1.00 68.03 C
ATOM 18 C6 G A 237 90.207 127.403 -2.346 1.00 67.37 C
ATOM 19 O6 G A 237 91.002 128.162 -2.904 1.00 67.22 O
ATOM 20 N1 G A 237 90.052 127.459 -0.970 1.00 67.61 N
ATOM 21 C2 G A 237 89.191 126.672 -0.245 1.00 68.18 C
ATOM 22 N2 G A 237 89.163 126.885 1.075 1.00 68.29 N
ATOM 23 N3 G A 237 88.404 125.745 -0.772 1.00 68.65 N
ATOM 24 C4 G A 237 88.535 125.671 -2.108 1.00 68.17 C
ATOM 25 P C A 238 82.684 126.116 -3.150 1.00 66.60 P
ATOM 26 OP1 C A 238 81.207 125.981 -3.155 1.00 65.56 O
ATOM 27 OP2 C A 238 83.340 127.016 -4.133 1.00 67.13 O
ATOM 28 O5' C A 238 83.134 126.549 -1.687 1.00 66.90 O
TER
ATOM 1 O3' U B 253 86.298 122.171 2.963 1.00 59.62 O
ATOM 2 P G B 254 85.201 120.984 2.980 1.00 59.53 P
ATOM 3 OP1 G B 254 83.906 121.618 3.360 1.00 57.90 O
ATOM 4 OP2 G B 254 85.690 119.790 3.723 1.00 58.34 O
ATOM 5 O5' G B 254 85.096 120.563 1.453 1.00 60.88 O
ATOM 6 C5' G B 254 84.552 121.483 0.494 1.00 62.43 C
ATOM 7 C4' G B 254 84.725 120.955 -0.916 1.00 62.97 C
ATOM 8 O4' G B 254 86.139 120.934 -1.263 1.00 62.55 O
ATOM 9 C3' G B 254 84.243 119.539 -1.210 1.00 63.06 C
ATOM 10 O3' G B 254 82.824 119.447 -1.421 1.00 64.40 O
ATOM 11 C2' G B 254 85.036 119.208 -2.470 1.00 62.53 C
ATOM 12 O2' G B 254 84.529 119.819 -3.638 1.00 63.75 O
ATOM 13 C1' G B 254 86.382 119.866 -2.160 1.00 61.68 C
ATOM 14 N9 G B 254 87.268 118.910 -1.518 1.00 60.04 N
ATOM 15 C8 G B 254 87.689 118.906 -0.216 1.00 59.99 C
ATOM 16 N7 G B 254 88.439 117.881 0.070 1.00 61.11 N
ATOM 17 C5 G B 254 88.531 117.179 -1.119 1.00 60.29 C
ATOM 18 C6 G B 254 89.219 115.981 -1.416 1.00 60.82 C
ATOM 19 O6 G B 254 89.908 115.293 -0.665 1.00 62.36 O
ATOM 20 N1 G B 254 89.045 115.602 -2.739 1.00 61.58 N
ATOM 21 C2 G B 254 88.297 116.296 -3.660 1.00 61.99 C
ATOM 22 N2 G B 254 88.214 115.757 -4.889 1.00 62.53 N
ATOM 23 N3 G B 254 87.662 117.431 -3.393 1.00 61.20 N
ATOM 24 C4 G B 254 87.821 117.805 -2.109 1.00 60.21 C
ATOM 25 P G B 255 82.050 118.062 -1.091 1.00 64.69 P
ATOM 26 OP1 G B 255 80.581 118.269 -1.270 1.00 63.55 O
ATOM 27 OP2 G B 255 82.559 117.605 0.228 1.00 65.41 O
ATOM 28 O5' G B 255 82.564 117.034 -2.211 1.00 65.99 O
TER
ATOM 2 P G A 237 85.447 124.659 -7.751 1.00 68.81 P
ATOM 3 OP1 G A 237 84.007 125.032 -7.817 1.00 66.98 O
ATOM 4 OP2 G A 237 86.478 125.650 -8.158 1.00 67.92 O
ATOM 5 O5' G A 237 85.750 124.219 -6.250 1.00 68.78 O
ATOM 6 C5' G A 237 85.010 123.152 -5.629 1.00 68.18 C
ATOM 7 C4' G A 237 85.143 123.228 -4.124 1.00 68.14 C
ATOM 8 O4' G A 237 86.532 123.045 -3.723 1.00 68.25 O
ATOM 9 C3' G A 237 84.744 124.551 -3.496 1.00 67.80 C
ATOM 10 O3' G A 237 83.336 124.665 -3.324 1.00 66.89 O
ATOM 11 C2' G A 237 85.488 124.510 -2.170 1.00 68.44 C
ATOM 12 O2' G A 237 84.820 123.724 -1.205 1.00 68.91 O
ATOM 13 C1' G A 237 86.810 123.850 -2.584 1.00 68.08 C
ATOM 14 N9 G A 237 87.838 124.826 -2.952 1.00 67.87 N
ATOM 15 C8 G A 237 88.289 125.098 -4.220 1.00 68.20 C
ATOM 16 N7 G A 237 89.192 126.042 -4.255 1.00 68.22 N
ATOM 17 C5 G A 237 89.359 126.413 -2.929 1.00 68.03 C
ATOM 18 C6 G A 237 90.207 127.403 -2.346 1.00 67.37 C
ATOM 19 O6 G A 237 91.002 128.162 -2.904 1.00 67.22 O
ATOM 20 N1 G A 237 90.052 127.459 -0.970 1.00 67.61 N
ATOM 21 C2 G A 237 89.191 126.672 -0.245 1.00 68.18 C
ATOM 22 N2 G A 237 89.163 126.885 1.075 1.00 68.29 N
ATOM 23 N3 G A 237 88.404 125.745 -0.772 1.00 68.65 N
ATOM 24 C4 G A 237 88.535 125.671 -2.108 1.00 68.17 C
ATOM 25 P C A 238 82.684 126.116 -3.150 1.00 66.60 P
ATOM 26 OP1 C A 238 81.207 125.981 -3.155 1.00 65.56 O
ATOM 27 OP2 C A 238 83.340 127.016 -4.133 1.00 67.13 O
ATOM 28 O5' C A 238 83.134 126.549 -1.687 1.00 66.90 O
TER
ATOM 1 O3' U B 253 86.298 122.171 2.963 1.00 59.62 O
ATOM 2 P G B 254 85.201 120.984 2.980 1.00 59.53 P
ATOM 3 OP1 G B 254 83.906 121.618 3.360 1.00 57.90 O
ATOM 4 OP2 G B 254 85.690 119.790 3.723 1.00 58.34 O
ATOM 5 O5' G B 254 85.096 120.563 1.453 1.00 60.88 O
ATOM 6 C5' G B 254 84.552 121.483 0.494 1.00 62.43 C
ATOM 7 C4' G B 254 84.725 120.955 -0.916 1.00 62.97 C
ATOM 8 O4' G B 254 86.139 120.934 -1.263 1.00 62.55 O
ATOM 9 C3' G B 254 84.243 119.539 -1.210 1.00 63.06 C
ATOM 10 O3' G B 254 82.824 119.447 -1.421 1.00 64.40 O
ATOM 11 C2' G B 254 85.036 119.208 -2.470 1.00 62.53 C
ATOM 12 O2' G B 254 84.529 119.819 -3.638 1.00 63.75 O
ATOM 13 C1' G B 254 86.382 119.866 -2.160 1.00 61.68 C
ATOM 14 N9 G B 254 87.268 118.910 -1.518 1.00 60.04 N
ATOM 15 C8 G B 254 87.689 118.906 -0.216 1.00 59.99 C
ATOM 16 N7 G B 254 88.439 117.881 0.070 1.00 61.11 N
ATOM 17 C5 G B 254 88.531 117.179 -1.119 1.00 60.29 C
ATOM 18 C6 G B 254 89.219 115.981 -1.416 1.00 60.82 C
ATOM 19 O6 G B 254 89.908 115.293 -0.665 1.00 62.36 O
ATOM 20 N1 G B 254 89.045 115.602 -2.739 1.00 61.58 N
ATOM 21 C2 G B 254 88.297 116.296 -3.660 1.00 61.99 C
ATOM 22 N2 G B 254 88.214 115.757 -4.889 1.00 62.53 N
ATOM 23 N3 G B 254 87.662 117.431 -3.393 1.00 61.20 N
ATOM 24 C4 G B 254 87.821 117.805 -2.109 1.00 60.21 C
ATOM 25 P G B 255 82.050 118.062 -1.091 1.00 64.69 P
ATOM 26 OP1 G B 255 80.581 118.269 -1.270 1.00 63.55 O
ATOM 27 OP2 G B 255 82.559 117.605 0.228 1.00 65.41 O
ATOM 28 O5' G B 255 82.564 117.034 -2.211 1.00 65.99 O
TER
Atoms:
OP1: (84.007,125.032,-7.817)
OP2: (86.478,125.650,-8.158)
C3': (84.744,124.551,-3.496)
C1': (86.810,123.850,-2.584)
C5': (85.010,123.152,-5.629)
O6: (91.002,128.162,-2.904)
O4': (86.532,123.045,-3.723)
C8: (88.289,125.098,-4.220)
C2: (89.191,126.672,-0.245)
C6: (90.207,127.403,-2.346)
C5: (89.359,126.413,-2.929)
C4: (88.535,125.671,-2.108)
P: (85.447,124.659,-7.751)
C4': (85.143,123.228,-4.124)
C2': (85.488,124.510,-2.170)
O2': (84.820,123.724,-1.205)
N1: (90.052,127.459,-0.970)
N2: (89.163,126.885,1.075)
N3: (88.404,125.745,-0.772)
N7: (89.192,126.042,-4.255)
N9: (87.838,124.826,-2.952)
O5': (85.750,124.219,-6.250)
O3': (83.336,124.665,-3.324)
OP2: (86.478,125.650,-8.158)
C3': (84.744,124.551,-3.496)
C1': (86.810,123.850,-2.584)
C5': (85.010,123.152,-5.629)
O6: (91.002,128.162,-2.904)
O4': (86.532,123.045,-3.723)
C8: (88.289,125.098,-4.220)
C2: (89.191,126.672,-0.245)
C6: (90.207,127.403,-2.346)
C5: (89.359,126.413,-2.929)
C4: (88.535,125.671,-2.108)
P: (85.447,124.659,-7.751)
C4': (85.143,123.228,-4.124)
C2': (85.488,124.510,-2.170)
O2': (84.820,123.724,-1.205)
N1: (90.052,127.459,-0.970)
N2: (89.163,126.885,1.075)
N3: (88.404,125.745,-0.772)
N7: (89.192,126.042,-4.255)
N9: (87.838,124.826,-2.952)
O5': (85.750,124.219,-6.250)
O3': (83.336,124.665,-3.324)
OP1: (83.906,121.618,3.360)
OP2: (85.690,119.790,3.723)
C3': (84.243,119.539,-1.210)
C1': (86.382,119.866,-2.160)
C5': (84.552,121.483,0.494)
O6: (89.908,115.293,-0.665)
O4': (86.139,120.934,-1.263)
C8: (87.689,118.906,-0.216)
C2: (88.297,116.296,-3.660)
C6: (89.219,115.981,-1.416)
C5: (88.531,117.179,-1.119)
C4: (87.821,117.805,-2.109)
P: (85.201,120.984,2.980)
C4': (84.725,120.955,-0.916)
C2': (85.036,119.208,-2.470)
O2': (84.529,119.819,-3.638)
N1: (89.045,115.602,-2.739)
N2: (88.214,115.757,-4.889)
N3: (87.662,117.431,-3.393)
N7: (88.439,117.881,0.070)
N9: (87.268,118.910,-1.518)
O5': (85.096,120.563,1.453)
O3': (82.824,119.447,-1.421)
OP2: (85.690,119.790,3.723)
C3': (84.243,119.539,-1.210)
C1': (86.382,119.866,-2.160)
C5': (84.552,121.483,0.494)
O6: (89.908,115.293,-0.665)
O4': (86.139,120.934,-1.263)
C8: (87.689,118.906,-0.216)
C2: (88.297,116.296,-3.660)
C6: (89.219,115.981,-1.416)
C5: (88.531,117.179,-1.119)
C4: (87.821,117.805,-2.109)
P: (85.201,120.984,2.980)
C4': (84.725,120.955,-0.916)
C2': (85.036,119.208,-2.470)
O2': (84.529,119.819,-3.638)
N1: (89.045,115.602,-2.739)
N2: (88.214,115.757,-4.889)
N3: (87.662,117.431,-3.393)
N7: (88.439,117.881,0.070)
N9: (87.268,118.910,-1.518)
O5': (85.096,120.563,1.453)
O3': (82.824,119.447,-1.421)
Image (generated by PyMOL):