Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0237:0254
Extra
PDB:
ATOM 1 O3' A A 236 85.494 123.348 -8.940 1.00 56.63 O
ATOM 2 P G A 237 85.230 124.693 -8.100 1.00 60.39 P
ATOM 3 OP1 G A 237 83.773 124.975 -8.209 1.00 58.72 O
ATOM 4 OP2 G A 237 86.214 125.731 -8.508 1.00 60.44 O
ATOM 5 O5' G A 237 85.569 124.299 -6.594 1.00 61.84 O
ATOM 6 C5' G A 237 84.851 123.254 -5.919 1.00 60.39 C
ATOM 7 C4' G A 237 84.990 123.415 -4.427 1.00 59.68 C
ATOM 8 O4' G A 237 86.383 123.266 -4.043 1.00 59.08 O
ATOM 9 C3' G A 237 84.597 124.773 -3.873 1.00 57.75 C
ATOM 10 O3' G A 237 83.186 124.861 -3.704 1.00 57.11 O
ATOM 11 C2' G A 237 85.345 124.800 -2.550 1.00 58.43 C
ATOM 12 O2' G A 237 84.690 124.057 -1.545 1.00 59.54 O
ATOM 13 C1' G A 237 86.651 124.093 -2.925 1.00 58.98 C
ATOM 14 N9 G A 237 87.717 125.024 -3.279 1.00 60.09 N
ATOM 15 C8 G A 237 88.237 125.272 -4.527 1.00 61.29 C
ATOM 16 N7 G A 237 89.173 126.182 -4.519 1.00 61.24 N
ATOM 17 C5 G A 237 89.281 126.553 -3.186 1.00 61.34 C
ATOM 18 C6 G A 237 90.129 127.502 -2.559 1.00 61.23 C
ATOM 19 O6 G A 237 90.987 128.232 -3.074 1.00 61.81 O
ATOM 20 N1 G A 237 89.905 127.557 -1.188 1.00 61.33 N
ATOM 21 C2 G A 237 88.987 126.798 -0.506 1.00 60.50 C
ATOM 22 N2 G A 237 88.916 126.990 0.814 1.00 60.33 N
ATOM 23 N3 G A 237 88.195 125.915 -1.077 1.00 60.98 N
ATOM 24 C4 G A 237 88.393 125.843 -2.408 1.00 61.14 C
ATOM 25 P C A 238 82.485 126.298 -3.520 1.00 58.11 P
ATOM 26 OP1 C A 238 81.017 126.074 -3.534 1.00 57.50 O
ATOM 27 OP2 C A 238 83.084 127.264 -4.480 1.00 56.10 O
ATOM 28 O5' C A 238 82.897 126.730 -2.040 1.00 58.12 O
TER
ATOM 1 O3' U B 253 86.085 122.324 2.515 1.00 49.29 O
ATOM 2 P G B 254 85.009 121.139 2.514 1.00 49.99 P
ATOM 3 OP1 G B 254 83.710 121.733 2.925 1.00 49.11 O
ATOM 4 OP2 G B 254 85.579 119.990 3.275 1.00 48.44 O
ATOM 5 O5' G B 254 84.894 120.711 0.983 1.00 51.32 O
ATOM 6 C5' G B 254 84.285 121.587 0.017 1.00 52.23 C
ATOM 7 C4' G B 254 84.476 121.050 -1.383 1.00 51.93 C
ATOM 8 O4' G B 254 85.892 121.012 -1.714 1.00 51.45 O
ATOM 9 C3' G B 254 84.017 119.622 -1.622 1.00 52.53 C
ATOM 10 O3' G B 254 82.609 119.524 -1.811 1.00 53.42 O
ATOM 11 C2' G B 254 84.796 119.261 -2.878 1.00 51.94 C
ATOM 12 O2' G B 254 84.237 119.833 -4.045 1.00 51.75 O
ATOM 13 C1' G B 254 86.144 119.918 -2.583 1.00 50.63 C
ATOM 14 N9 G B 254 87.042 118.985 -1.912 1.00 50.19 N
ATOM 15 C8 G B 254 87.471 119.026 -0.611 1.00 49.82 C
ATOM 16 N7 G B 254 88.254 118.031 -0.299 1.00 50.96 N
ATOM 17 C5 G B 254 88.349 117.288 -1.465 1.00 50.87 C
ATOM 18 C6 G B 254 89.060 116.088 -1.737 1.00 52.76 C
ATOM 19 O6 G B 254 89.756 115.412 -0.970 1.00 54.73 O
ATOM 20 N1 G B 254 88.896 115.686 -3.058 1.00 52.63 N
ATOM 21 C2 G B 254 88.135 116.346 -3.995 1.00 52.77 C
ATOM 22 N2 G B 254 88.103 115.809 -5.223 1.00 53.22 N
ATOM 23 N3 G B 254 87.456 117.452 -3.747 1.00 52.11 N
ATOM 24 C4 G B 254 87.612 117.866 -2.472 1.00 50.96 C
ATOM 25 P G B 255 81.867 118.117 -1.570 1.00 51.77 P
ATOM 26 OP1 G B 255 80.415 118.357 -1.762 1.00 50.90 O
ATOM 27 OP2 G B 255 82.357 117.538 -0.291 1.00 52.55 O
ATOM 28 O5' G B 255 82.387 117.186 -2.757 1.00 52.41 O
TER
ATOM 2 P G A 237 85.230 124.693 -8.100 1.00 60.39 P
ATOM 3 OP1 G A 237 83.773 124.975 -8.209 1.00 58.72 O
ATOM 4 OP2 G A 237 86.214 125.731 -8.508 1.00 60.44 O
ATOM 5 O5' G A 237 85.569 124.299 -6.594 1.00 61.84 O
ATOM 6 C5' G A 237 84.851 123.254 -5.919 1.00 60.39 C
ATOM 7 C4' G A 237 84.990 123.415 -4.427 1.00 59.68 C
ATOM 8 O4' G A 237 86.383 123.266 -4.043 1.00 59.08 O
ATOM 9 C3' G A 237 84.597 124.773 -3.873 1.00 57.75 C
ATOM 10 O3' G A 237 83.186 124.861 -3.704 1.00 57.11 O
ATOM 11 C2' G A 237 85.345 124.800 -2.550 1.00 58.43 C
ATOM 12 O2' G A 237 84.690 124.057 -1.545 1.00 59.54 O
ATOM 13 C1' G A 237 86.651 124.093 -2.925 1.00 58.98 C
ATOM 14 N9 G A 237 87.717 125.024 -3.279 1.00 60.09 N
ATOM 15 C8 G A 237 88.237 125.272 -4.527 1.00 61.29 C
ATOM 16 N7 G A 237 89.173 126.182 -4.519 1.00 61.24 N
ATOM 17 C5 G A 237 89.281 126.553 -3.186 1.00 61.34 C
ATOM 18 C6 G A 237 90.129 127.502 -2.559 1.00 61.23 C
ATOM 19 O6 G A 237 90.987 128.232 -3.074 1.00 61.81 O
ATOM 20 N1 G A 237 89.905 127.557 -1.188 1.00 61.33 N
ATOM 21 C2 G A 237 88.987 126.798 -0.506 1.00 60.50 C
ATOM 22 N2 G A 237 88.916 126.990 0.814 1.00 60.33 N
ATOM 23 N3 G A 237 88.195 125.915 -1.077 1.00 60.98 N
ATOM 24 C4 G A 237 88.393 125.843 -2.408 1.00 61.14 C
ATOM 25 P C A 238 82.485 126.298 -3.520 1.00 58.11 P
ATOM 26 OP1 C A 238 81.017 126.074 -3.534 1.00 57.50 O
ATOM 27 OP2 C A 238 83.084 127.264 -4.480 1.00 56.10 O
ATOM 28 O5' C A 238 82.897 126.730 -2.040 1.00 58.12 O
TER
ATOM 1 O3' U B 253 86.085 122.324 2.515 1.00 49.29 O
ATOM 2 P G B 254 85.009 121.139 2.514 1.00 49.99 P
ATOM 3 OP1 G B 254 83.710 121.733 2.925 1.00 49.11 O
ATOM 4 OP2 G B 254 85.579 119.990 3.275 1.00 48.44 O
ATOM 5 O5' G B 254 84.894 120.711 0.983 1.00 51.32 O
ATOM 6 C5' G B 254 84.285 121.587 0.017 1.00 52.23 C
ATOM 7 C4' G B 254 84.476 121.050 -1.383 1.00 51.93 C
ATOM 8 O4' G B 254 85.892 121.012 -1.714 1.00 51.45 O
ATOM 9 C3' G B 254 84.017 119.622 -1.622 1.00 52.53 C
ATOM 10 O3' G B 254 82.609 119.524 -1.811 1.00 53.42 O
ATOM 11 C2' G B 254 84.796 119.261 -2.878 1.00 51.94 C
ATOM 12 O2' G B 254 84.237 119.833 -4.045 1.00 51.75 O
ATOM 13 C1' G B 254 86.144 119.918 -2.583 1.00 50.63 C
ATOM 14 N9 G B 254 87.042 118.985 -1.912 1.00 50.19 N
ATOM 15 C8 G B 254 87.471 119.026 -0.611 1.00 49.82 C
ATOM 16 N7 G B 254 88.254 118.031 -0.299 1.00 50.96 N
ATOM 17 C5 G B 254 88.349 117.288 -1.465 1.00 50.87 C
ATOM 18 C6 G B 254 89.060 116.088 -1.737 1.00 52.76 C
ATOM 19 O6 G B 254 89.756 115.412 -0.970 1.00 54.73 O
ATOM 20 N1 G B 254 88.896 115.686 -3.058 1.00 52.63 N
ATOM 21 C2 G B 254 88.135 116.346 -3.995 1.00 52.77 C
ATOM 22 N2 G B 254 88.103 115.809 -5.223 1.00 53.22 N
ATOM 23 N3 G B 254 87.456 117.452 -3.747 1.00 52.11 N
ATOM 24 C4 G B 254 87.612 117.866 -2.472 1.00 50.96 C
ATOM 25 P G B 255 81.867 118.117 -1.570 1.00 51.77 P
ATOM 26 OP1 G B 255 80.415 118.357 -1.762 1.00 50.90 O
ATOM 27 OP2 G B 255 82.357 117.538 -0.291 1.00 52.55 O
ATOM 28 O5' G B 255 82.387 117.186 -2.757 1.00 52.41 O
TER
Atoms:
OP1: (83.773,124.975,-8.209)
OP2: (86.214,125.731,-8.508)
C3': (84.597,124.773,-3.873)
C1': (86.651,124.093,-2.925)
C5': (84.851,123.254,-5.919)
O6: (90.987,128.232,-3.074)
O4': (86.383,123.266,-4.043)
C8: (88.237,125.272,-4.527)
C2: (88.987,126.798,-0.506)
C6: (90.129,127.502,-2.559)
C5: (89.281,126.553,-3.186)
C4: (88.393,125.843,-2.408)
P: (85.230,124.693,-8.100)
C4': (84.990,123.415,-4.427)
C2': (85.345,124.800,-2.550)
O2': (84.690,124.057,-1.545)
N1: (89.905,127.557,-1.188)
N2: (88.916,126.990,0.814)
N3: (88.195,125.915,-1.077)
N7: (89.173,126.182,-4.519)
N9: (87.717,125.024,-3.279)
O5': (85.569,124.299,-6.594)
O3': (83.186,124.861,-3.704)
OP2: (86.214,125.731,-8.508)
C3': (84.597,124.773,-3.873)
C1': (86.651,124.093,-2.925)
C5': (84.851,123.254,-5.919)
O6: (90.987,128.232,-3.074)
O4': (86.383,123.266,-4.043)
C8: (88.237,125.272,-4.527)
C2: (88.987,126.798,-0.506)
C6: (90.129,127.502,-2.559)
C5: (89.281,126.553,-3.186)
C4: (88.393,125.843,-2.408)
P: (85.230,124.693,-8.100)
C4': (84.990,123.415,-4.427)
C2': (85.345,124.800,-2.550)
O2': (84.690,124.057,-1.545)
N1: (89.905,127.557,-1.188)
N2: (88.916,126.990,0.814)
N3: (88.195,125.915,-1.077)
N7: (89.173,126.182,-4.519)
N9: (87.717,125.024,-3.279)
O5': (85.569,124.299,-6.594)
O3': (83.186,124.861,-3.704)
OP1: (83.710,121.733,2.925)
OP2: (85.579,119.990,3.275)
C3': (84.017,119.622,-1.622)
C1': (86.144,119.918,-2.583)
C5': (84.285,121.587,0.017)
O6: (89.756,115.412,-0.970)
O4': (85.892,121.012,-1.714)
C8: (87.471,119.026,-0.611)
C2: (88.135,116.346,-3.995)
C6: (89.060,116.088,-1.737)
C5: (88.349,117.288,-1.465)
C4: (87.612,117.866,-2.472)
P: (85.009,121.139,2.514)
C4': (84.476,121.050,-1.383)
C2': (84.796,119.261,-2.878)
O2': (84.237,119.833,-4.045)
N1: (88.896,115.686,-3.058)
N2: (88.103,115.809,-5.223)
N3: (87.456,117.452,-3.747)
N7: (88.254,118.031,-0.299)
N9: (87.042,118.985,-1.912)
O5': (84.894,120.711,0.983)
O3': (82.609,119.524,-1.811)
OP2: (85.579,119.990,3.275)
C3': (84.017,119.622,-1.622)
C1': (86.144,119.918,-2.583)
C5': (84.285,121.587,0.017)
O6: (89.756,115.412,-0.970)
O4': (85.892,121.012,-1.714)
C8: (87.471,119.026,-0.611)
C2: (88.135,116.346,-3.995)
C6: (89.060,116.088,-1.737)
C5: (88.349,117.288,-1.465)
C4: (87.612,117.866,-2.472)
P: (85.009,121.139,2.514)
C4': (84.476,121.050,-1.383)
C2': (84.796,119.261,-2.878)
O2': (84.237,119.833,-4.045)
N1: (88.896,115.686,-3.058)
N2: (88.103,115.809,-5.223)
N3: (87.456,117.452,-3.747)
N7: (88.254,118.031,-0.299)
N9: (87.042,118.985,-1.912)
O5': (84.894,120.711,0.983)
O3': (82.609,119.524,-1.811)
Image (generated by PyMOL):