Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0237:0254
Extra
PDB:
ATOM 1 O3' A A 236 85.650 123.187 -8.987 1.00 55.68 O
ATOM 2 P G A 237 85.276 124.464 -8.092 1.00 58.54 P
ATOM 3 OP1 G A 237 83.799 124.623 -8.159 1.00 56.90 O
ATOM 4 OP2 G A 237 86.155 125.598 -8.477 1.00 58.58 O
ATOM 5 O5' G A 237 85.680 124.031 -6.615 1.00 59.52 O
ATOM 6 C5' G A 237 84.961 123.001 -5.920 1.00 57.77 C
ATOM 7 C4' G A 237 85.127 123.181 -4.436 1.00 57.51 C
ATOM 8 O4' G A 237 86.534 123.083 -4.098 1.00 58.00 O
ATOM 9 C3' G A 237 84.723 124.545 -3.908 1.00 56.54 C
ATOM 10 O3' G A 237 83.317 124.591 -3.696 1.00 56.74 O
ATOM 11 C2' G A 237 85.510 124.638 -2.611 1.00 56.71 C
ATOM 12 O2' G A 237 84.895 123.947 -1.550 1.00 57.48 O
ATOM 13 C1' G A 237 86.807 123.917 -2.990 1.00 58.64 C
ATOM 14 N9 G A 237 87.900 124.820 -3.328 1.00 60.72 N
ATOM 15 C8 G A 237 88.466 125.045 -4.560 1.00 61.88 C
ATOM 16 N7 G A 237 89.416 125.941 -4.531 1.00 62.15 N
ATOM 17 C5 G A 237 89.483 126.324 -3.198 1.00 62.25 C
ATOM 18 C6 G A 237 90.319 127.269 -2.551 1.00 62.80 C
ATOM 19 O6 G A 237 91.202 127.988 -3.044 1.00 63.77 O
ATOM 20 N1 G A 237 90.048 127.337 -1.188 1.00 62.12 N
ATOM 21 C2 G A 237 89.100 126.594 -0.533 1.00 61.16 C
ATOM 22 N2 G A 237 88.982 126.792 0.782 1.00 61.29 N
ATOM 23 N3 G A 237 88.321 125.718 -1.122 1.00 62.16 N
ATOM 24 C4 G A 237 88.562 125.634 -2.445 1.00 61.95 C
ATOM 25 P C A 238 82.588 126.004 -3.459 1.00 56.51 P
ATOM 26 OP1 C A 238 81.128 125.745 -3.409 1.00 57.65 O
ATOM 27 OP2 C A 238 83.120 126.986 -4.436 1.00 55.24 O
ATOM 28 O5' C A 238 83.058 126.425 -1.996 1.00 56.16 O
TER
ATOM 1 O3' U B 253 86.184 122.140 2.628 1.00 49.27 O
ATOM 2 P G B 254 85.089 120.969 2.593 1.00 51.32 P
ATOM 3 OP1 G B 254 83.779 121.561 2.990 1.00 49.96 O
ATOM 4 OP2 G B 254 85.641 119.814 3.346 1.00 49.18 O
ATOM 5 O5' G B 254 85.008 120.549 1.057 1.00 52.10 O
ATOM 6 C5' G B 254 84.400 121.417 0.084 1.00 52.02 C
ATOM 7 C4' G B 254 84.588 120.870 -1.315 1.00 52.63 C
ATOM 8 O4' G B 254 86.006 120.810 -1.639 1.00 50.12 O
ATOM 9 C3' G B 254 84.112 119.448 -1.581 1.00 53.54 C
ATOM 10 O3' G B 254 82.701 119.334 -1.767 1.00 55.58 O
ATOM 11 C2' G B 254 84.877 119.112 -2.852 1.00 52.23 C
ATOM 12 O2' G B 254 84.310 119.716 -3.999 1.00 51.67 O
ATOM 13 C1' G B 254 86.236 119.743 -2.547 1.00 49.99 C
ATOM 14 N9 G B 254 87.122 118.769 -1.918 1.00 48.45 N
ATOM 15 C8 G B 254 87.571 118.753 -0.624 1.00 48.15 C
ATOM 16 N7 G B 254 88.335 117.729 -0.361 1.00 48.36 N
ATOM 17 C5 G B 254 88.397 117.031 -1.556 1.00 48.70 C
ATOM 18 C6 G B 254 89.082 115.832 -1.889 1.00 50.54 C
ATOM 19 O6 G B 254 89.785 115.121 -1.167 1.00 52.26 O
ATOM 20 N1 G B 254 88.883 115.482 -3.220 1.00 51.44 N
ATOM 21 C2 G B 254 88.118 116.190 -4.116 1.00 52.37 C
ATOM 22 N2 G B 254 88.049 115.697 -5.364 1.00 52.82 N
ATOM 23 N3 G B 254 87.468 117.303 -3.813 1.00 51.16 N
ATOM 24 C4 G B 254 87.656 117.663 -2.527 1.00 49.00 C
ATOM 25 P G B 255 81.981 117.913 -1.519 1.00 55.62 P
ATOM 26 OP1 G B 255 80.522 118.102 -1.699 1.00 55.24 O
ATOM 27 OP2 G B 255 82.497 117.348 -0.248 1.00 55.78 O
ATOM 28 O5' G B 255 82.507 116.997 -2.713 1.00 55.99 O
TER
ATOM 2 P G A 237 85.276 124.464 -8.092 1.00 58.54 P
ATOM 3 OP1 G A 237 83.799 124.623 -8.159 1.00 56.90 O
ATOM 4 OP2 G A 237 86.155 125.598 -8.477 1.00 58.58 O
ATOM 5 O5' G A 237 85.680 124.031 -6.615 1.00 59.52 O
ATOM 6 C5' G A 237 84.961 123.001 -5.920 1.00 57.77 C
ATOM 7 C4' G A 237 85.127 123.181 -4.436 1.00 57.51 C
ATOM 8 O4' G A 237 86.534 123.083 -4.098 1.00 58.00 O
ATOM 9 C3' G A 237 84.723 124.545 -3.908 1.00 56.54 C
ATOM 10 O3' G A 237 83.317 124.591 -3.696 1.00 56.74 O
ATOM 11 C2' G A 237 85.510 124.638 -2.611 1.00 56.71 C
ATOM 12 O2' G A 237 84.895 123.947 -1.550 1.00 57.48 O
ATOM 13 C1' G A 237 86.807 123.917 -2.990 1.00 58.64 C
ATOM 14 N9 G A 237 87.900 124.820 -3.328 1.00 60.72 N
ATOM 15 C8 G A 237 88.466 125.045 -4.560 1.00 61.88 C
ATOM 16 N7 G A 237 89.416 125.941 -4.531 1.00 62.15 N
ATOM 17 C5 G A 237 89.483 126.324 -3.198 1.00 62.25 C
ATOM 18 C6 G A 237 90.319 127.269 -2.551 1.00 62.80 C
ATOM 19 O6 G A 237 91.202 127.988 -3.044 1.00 63.77 O
ATOM 20 N1 G A 237 90.048 127.337 -1.188 1.00 62.12 N
ATOM 21 C2 G A 237 89.100 126.594 -0.533 1.00 61.16 C
ATOM 22 N2 G A 237 88.982 126.792 0.782 1.00 61.29 N
ATOM 23 N3 G A 237 88.321 125.718 -1.122 1.00 62.16 N
ATOM 24 C4 G A 237 88.562 125.634 -2.445 1.00 61.95 C
ATOM 25 P C A 238 82.588 126.004 -3.459 1.00 56.51 P
ATOM 26 OP1 C A 238 81.128 125.745 -3.409 1.00 57.65 O
ATOM 27 OP2 C A 238 83.120 126.986 -4.436 1.00 55.24 O
ATOM 28 O5' C A 238 83.058 126.425 -1.996 1.00 56.16 O
TER
ATOM 1 O3' U B 253 86.184 122.140 2.628 1.00 49.27 O
ATOM 2 P G B 254 85.089 120.969 2.593 1.00 51.32 P
ATOM 3 OP1 G B 254 83.779 121.561 2.990 1.00 49.96 O
ATOM 4 OP2 G B 254 85.641 119.814 3.346 1.00 49.18 O
ATOM 5 O5' G B 254 85.008 120.549 1.057 1.00 52.10 O
ATOM 6 C5' G B 254 84.400 121.417 0.084 1.00 52.02 C
ATOM 7 C4' G B 254 84.588 120.870 -1.315 1.00 52.63 C
ATOM 8 O4' G B 254 86.006 120.810 -1.639 1.00 50.12 O
ATOM 9 C3' G B 254 84.112 119.448 -1.581 1.00 53.54 C
ATOM 10 O3' G B 254 82.701 119.334 -1.767 1.00 55.58 O
ATOM 11 C2' G B 254 84.877 119.112 -2.852 1.00 52.23 C
ATOM 12 O2' G B 254 84.310 119.716 -3.999 1.00 51.67 O
ATOM 13 C1' G B 254 86.236 119.743 -2.547 1.00 49.99 C
ATOM 14 N9 G B 254 87.122 118.769 -1.918 1.00 48.45 N
ATOM 15 C8 G B 254 87.571 118.753 -0.624 1.00 48.15 C
ATOM 16 N7 G B 254 88.335 117.729 -0.361 1.00 48.36 N
ATOM 17 C5 G B 254 88.397 117.031 -1.556 1.00 48.70 C
ATOM 18 C6 G B 254 89.082 115.832 -1.889 1.00 50.54 C
ATOM 19 O6 G B 254 89.785 115.121 -1.167 1.00 52.26 O
ATOM 20 N1 G B 254 88.883 115.482 -3.220 1.00 51.44 N
ATOM 21 C2 G B 254 88.118 116.190 -4.116 1.00 52.37 C
ATOM 22 N2 G B 254 88.049 115.697 -5.364 1.00 52.82 N
ATOM 23 N3 G B 254 87.468 117.303 -3.813 1.00 51.16 N
ATOM 24 C4 G B 254 87.656 117.663 -2.527 1.00 49.00 C
ATOM 25 P G B 255 81.981 117.913 -1.519 1.00 55.62 P
ATOM 26 OP1 G B 255 80.522 118.102 -1.699 1.00 55.24 O
ATOM 27 OP2 G B 255 82.497 117.348 -0.248 1.00 55.78 O
ATOM 28 O5' G B 255 82.507 116.997 -2.713 1.00 55.99 O
TER
Atoms:
OP1: (83.799,124.623,-8.159)
OP2: (86.155,125.598,-8.477)
C3': (84.723,124.545,-3.908)
C1': (86.807,123.917,-2.990)
C5': (84.961,123.001,-5.920)
O6: (91.202,127.988,-3.044)
O4': (86.534,123.083,-4.098)
C8: (88.466,125.045,-4.560)
C2: (89.100,126.594,-0.533)
C6: (90.319,127.269,-2.551)
C5: (89.483,126.324,-3.198)
C4: (88.562,125.634,-2.445)
P: (85.276,124.464,-8.092)
C4': (85.127,123.181,-4.436)
C2': (85.510,124.638,-2.611)
O2': (84.895,123.947,-1.550)
N1: (90.048,127.337,-1.188)
N2: (88.982,126.792,0.782)
N3: (88.321,125.718,-1.122)
N7: (89.416,125.941,-4.531)
N9: (87.900,124.820,-3.328)
O5': (85.680,124.031,-6.615)
O3': (83.317,124.591,-3.696)
OP2: (86.155,125.598,-8.477)
C3': (84.723,124.545,-3.908)
C1': (86.807,123.917,-2.990)
C5': (84.961,123.001,-5.920)
O6: (91.202,127.988,-3.044)
O4': (86.534,123.083,-4.098)
C8: (88.466,125.045,-4.560)
C2: (89.100,126.594,-0.533)
C6: (90.319,127.269,-2.551)
C5: (89.483,126.324,-3.198)
C4: (88.562,125.634,-2.445)
P: (85.276,124.464,-8.092)
C4': (85.127,123.181,-4.436)
C2': (85.510,124.638,-2.611)
O2': (84.895,123.947,-1.550)
N1: (90.048,127.337,-1.188)
N2: (88.982,126.792,0.782)
N3: (88.321,125.718,-1.122)
N7: (89.416,125.941,-4.531)
N9: (87.900,124.820,-3.328)
O5': (85.680,124.031,-6.615)
O3': (83.317,124.591,-3.696)
OP1: (83.779,121.561,2.990)
OP2: (85.641,119.814,3.346)
C3': (84.112,119.448,-1.581)
C1': (86.236,119.743,-2.547)
C5': (84.400,121.417,0.084)
O6: (89.785,115.121,-1.167)
O4': (86.006,120.810,-1.639)
C8: (87.571,118.753,-0.624)
C2: (88.118,116.190,-4.116)
C6: (89.082,115.832,-1.889)
C5: (88.397,117.031,-1.556)
C4: (87.656,117.663,-2.527)
P: (85.089,120.969,2.593)
C4': (84.588,120.870,-1.315)
C2': (84.877,119.112,-2.852)
O2': (84.310,119.716,-3.999)
N1: (88.883,115.482,-3.220)
N2: (88.049,115.697,-5.364)
N3: (87.468,117.303,-3.813)
N7: (88.335,117.729,-0.361)
N9: (87.122,118.769,-1.918)
O5': (85.008,120.549,1.057)
O3': (82.701,119.334,-1.767)
OP2: (85.641,119.814,3.346)
C3': (84.112,119.448,-1.581)
C1': (86.236,119.743,-2.547)
C5': (84.400,121.417,0.084)
O6: (89.785,115.121,-1.167)
O4': (86.006,120.810,-1.639)
C8: (87.571,118.753,-0.624)
C2: (88.118,116.190,-4.116)
C6: (89.082,115.832,-1.889)
C5: (88.397,117.031,-1.556)
C4: (87.656,117.663,-2.527)
P: (85.089,120.969,2.593)
C4': (84.588,120.870,-1.315)
C2': (84.877,119.112,-2.852)
O2': (84.310,119.716,-3.999)
N1: (88.883,115.482,-3.220)
N2: (88.049,115.697,-5.364)
N3: (87.468,117.303,-3.813)
N7: (88.335,117.729,-0.361)
N9: (87.122,118.769,-1.918)
O5': (85.008,120.549,1.057)
O3': (82.701,119.334,-1.767)
Image (generated by PyMOL):