Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0237:0254
Extra
PDB:
ATOM 1 O3' A A 236 85.657 123.264 -8.947 1.00 64.80 O
ATOM 2 P G A 237 85.416 124.625 -8.129 1.00 68.46 P
ATOM 3 OP1 G A 237 83.971 124.950 -8.255 1.00 66.31 O
ATOM 4 OP2 G A 237 86.434 125.621 -8.545 1.00 67.85 O
ATOM 5 O5' G A 237 85.712 124.235 -6.616 1.00 68.45 O
ATOM 6 C5' G A 237 84.952 123.212 -5.961 1.00 68.19 C
ATOM 7 C4' G A 237 85.065 123.365 -4.471 1.00 67.20 C
ATOM 8 O4' G A 237 86.451 123.214 -4.077 1.00 66.88 O
ATOM 9 C3' G A 237 84.673 124.728 -3.932 1.00 65.77 C
ATOM 10 O3' G A 237 83.263 124.803 -3.779 1.00 66.03 O
ATOM 11 C2' G A 237 85.411 124.768 -2.603 1.00 65.87 C
ATOM 12 O2' G A 237 84.752 124.039 -1.588 1.00 65.65 O
ATOM 13 C1' G A 237 86.713 124.047 -2.963 1.00 67.09 C
ATOM 14 N9 G A 237 87.801 124.958 -3.303 1.00 68.10 N
ATOM 15 C8 G A 237 88.369 125.172 -4.535 1.00 68.82 C
ATOM 16 N7 G A 237 89.321 126.067 -4.511 1.00 69.22 N
ATOM 17 C5 G A 237 89.384 126.465 -3.182 1.00 68.52 C
ATOM 18 C6 G A 237 90.220 127.419 -2.543 1.00 67.58 C
ATOM 19 O6 G A 237 91.101 128.128 -3.039 1.00 66.87 O
ATOM 20 N1 G A 237 89.944 127.506 -1.182 1.00 67.50 N
ATOM 21 C2 G A 237 88.987 126.772 -0.520 1.00 67.84 C
ATOM 22 N2 G A 237 88.858 126.991 0.791 1.00 67.18 N
ATOM 23 N3 G A 237 88.208 125.886 -1.103 1.00 68.97 N
ATOM 24 C4 G A 237 88.457 125.785 -2.425 1.00 69.04 C
ATOM 25 P C A 238 82.559 126.220 -3.499 1.00 65.74 P
ATOM 26 OP1 C A 238 81.091 125.973 -3.448 1.00 64.85 O
ATOM 27 OP2 C A 238 83.099 127.222 -4.456 1.00 65.33 O
ATOM 28 O5' C A 238 83.052 126.602 -2.033 1.00 64.68 O
TER
ATOM 1 O3' U B 253 86.136 122.265 2.601 1.00 53.52 O
ATOM 2 P G B 254 85.049 121.081 2.573 1.00 55.86 P
ATOM 3 OP1 G B 254 83.736 121.669 2.950 1.00 54.15 O
ATOM 4 OP2 G B 254 85.589 119.931 3.341 1.00 53.97 O
ATOM 5 O5' G B 254 84.976 120.657 1.038 1.00 55.79 O
ATOM 6 C5' G B 254 84.340 121.514 0.074 1.00 56.78 C
ATOM 7 C4' G B 254 84.546 120.992 -1.328 1.00 57.24 C
ATOM 8 O4' G B 254 85.965 120.967 -1.640 1.00 56.28 O
ATOM 9 C3' G B 254 84.098 119.570 -1.623 1.00 57.70 C
ATOM 10 O3' G B 254 82.692 119.458 -1.830 1.00 60.18 O
ATOM 11 C2' G B 254 84.880 119.276 -2.893 1.00 57.36 C
ATOM 12 O2' G B 254 84.330 119.929 -4.020 1.00 58.06 O
ATOM 13 C1' G B 254 86.225 119.920 -2.561 1.00 56.03 C
ATOM 14 N9 G B 254 87.130 118.962 -1.937 1.00 55.16 N
ATOM 15 C8 G B 254 87.567 118.946 -0.639 1.00 55.22 C
ATOM 16 N7 G B 254 88.370 117.952 -0.383 1.00 55.79 N
ATOM 17 C5 G B 254 88.468 117.273 -1.586 1.00 56.58 C
ATOM 18 C6 G B 254 89.203 116.107 -1.926 1.00 58.75 C
ATOM 19 O6 G B 254 89.934 115.418 -1.207 1.00 60.58 O
ATOM 20 N1 G B 254 89.021 115.760 -3.260 1.00 59.56 N
ATOM 21 C2 G B 254 88.227 116.442 -4.149 1.00 59.86 C
ATOM 22 N2 G B 254 88.172 115.951 -5.391 1.00 61.25 N
ATOM 23 N3 G B 254 87.537 117.525 -3.841 1.00 58.85 N
ATOM 24 C4 G B 254 87.707 117.883 -2.553 1.00 56.39 C
ATOM 25 P G B 255 81.967 118.038 -1.607 1.00 60.90 P
ATOM 26 OP1 G B 255 80.506 118.213 -1.800 1.00 60.73 O
ATOM 27 OP2 G B 255 82.466 117.459 -0.337 1.00 61.83 O
ATOM 28 O5' G B 255 82.519 117.147 -2.804 1.00 61.85 O
TER
ATOM 2 P G A 237 85.416 124.625 -8.129 1.00 68.46 P
ATOM 3 OP1 G A 237 83.971 124.950 -8.255 1.00 66.31 O
ATOM 4 OP2 G A 237 86.434 125.621 -8.545 1.00 67.85 O
ATOM 5 O5' G A 237 85.712 124.235 -6.616 1.00 68.45 O
ATOM 6 C5' G A 237 84.952 123.212 -5.961 1.00 68.19 C
ATOM 7 C4' G A 237 85.065 123.365 -4.471 1.00 67.20 C
ATOM 8 O4' G A 237 86.451 123.214 -4.077 1.00 66.88 O
ATOM 9 C3' G A 237 84.673 124.728 -3.932 1.00 65.77 C
ATOM 10 O3' G A 237 83.263 124.803 -3.779 1.00 66.03 O
ATOM 11 C2' G A 237 85.411 124.768 -2.603 1.00 65.87 C
ATOM 12 O2' G A 237 84.752 124.039 -1.588 1.00 65.65 O
ATOM 13 C1' G A 237 86.713 124.047 -2.963 1.00 67.09 C
ATOM 14 N9 G A 237 87.801 124.958 -3.303 1.00 68.10 N
ATOM 15 C8 G A 237 88.369 125.172 -4.535 1.00 68.82 C
ATOM 16 N7 G A 237 89.321 126.067 -4.511 1.00 69.22 N
ATOM 17 C5 G A 237 89.384 126.465 -3.182 1.00 68.52 C
ATOM 18 C6 G A 237 90.220 127.419 -2.543 1.00 67.58 C
ATOM 19 O6 G A 237 91.101 128.128 -3.039 1.00 66.87 O
ATOM 20 N1 G A 237 89.944 127.506 -1.182 1.00 67.50 N
ATOM 21 C2 G A 237 88.987 126.772 -0.520 1.00 67.84 C
ATOM 22 N2 G A 237 88.858 126.991 0.791 1.00 67.18 N
ATOM 23 N3 G A 237 88.208 125.886 -1.103 1.00 68.97 N
ATOM 24 C4 G A 237 88.457 125.785 -2.425 1.00 69.04 C
ATOM 25 P C A 238 82.559 126.220 -3.499 1.00 65.74 P
ATOM 26 OP1 C A 238 81.091 125.973 -3.448 1.00 64.85 O
ATOM 27 OP2 C A 238 83.099 127.222 -4.456 1.00 65.33 O
ATOM 28 O5' C A 238 83.052 126.602 -2.033 1.00 64.68 O
TER
ATOM 1 O3' U B 253 86.136 122.265 2.601 1.00 53.52 O
ATOM 2 P G B 254 85.049 121.081 2.573 1.00 55.86 P
ATOM 3 OP1 G B 254 83.736 121.669 2.950 1.00 54.15 O
ATOM 4 OP2 G B 254 85.589 119.931 3.341 1.00 53.97 O
ATOM 5 O5' G B 254 84.976 120.657 1.038 1.00 55.79 O
ATOM 6 C5' G B 254 84.340 121.514 0.074 1.00 56.78 C
ATOM 7 C4' G B 254 84.546 120.992 -1.328 1.00 57.24 C
ATOM 8 O4' G B 254 85.965 120.967 -1.640 1.00 56.28 O
ATOM 9 C3' G B 254 84.098 119.570 -1.623 1.00 57.70 C
ATOM 10 O3' G B 254 82.692 119.458 -1.830 1.00 60.18 O
ATOM 11 C2' G B 254 84.880 119.276 -2.893 1.00 57.36 C
ATOM 12 O2' G B 254 84.330 119.929 -4.020 1.00 58.06 O
ATOM 13 C1' G B 254 86.225 119.920 -2.561 1.00 56.03 C
ATOM 14 N9 G B 254 87.130 118.962 -1.937 1.00 55.16 N
ATOM 15 C8 G B 254 87.567 118.946 -0.639 1.00 55.22 C
ATOM 16 N7 G B 254 88.370 117.952 -0.383 1.00 55.79 N
ATOM 17 C5 G B 254 88.468 117.273 -1.586 1.00 56.58 C
ATOM 18 C6 G B 254 89.203 116.107 -1.926 1.00 58.75 C
ATOM 19 O6 G B 254 89.934 115.418 -1.207 1.00 60.58 O
ATOM 20 N1 G B 254 89.021 115.760 -3.260 1.00 59.56 N
ATOM 21 C2 G B 254 88.227 116.442 -4.149 1.00 59.86 C
ATOM 22 N2 G B 254 88.172 115.951 -5.391 1.00 61.25 N
ATOM 23 N3 G B 254 87.537 117.525 -3.841 1.00 58.85 N
ATOM 24 C4 G B 254 87.707 117.883 -2.553 1.00 56.39 C
ATOM 25 P G B 255 81.967 118.038 -1.607 1.00 60.90 P
ATOM 26 OP1 G B 255 80.506 118.213 -1.800 1.00 60.73 O
ATOM 27 OP2 G B 255 82.466 117.459 -0.337 1.00 61.83 O
ATOM 28 O5' G B 255 82.519 117.147 -2.804 1.00 61.85 O
TER
Atoms:
OP1: (83.971,124.950,-8.255)
OP2: (86.434,125.621,-8.545)
C3': (84.673,124.728,-3.932)
C1': (86.713,124.047,-2.963)
C5': (84.952,123.212,-5.961)
O6: (91.101,128.128,-3.039)
O4': (86.451,123.214,-4.077)
C8: (88.369,125.172,-4.535)
C2: (88.987,126.772,-0.520)
C6: (90.220,127.419,-2.543)
C5: (89.384,126.465,-3.182)
C4: (88.457,125.785,-2.425)
P: (85.416,124.625,-8.129)
C4': (85.065,123.365,-4.471)
C2': (85.411,124.768,-2.603)
O2': (84.752,124.039,-1.588)
N1: (89.944,127.506,-1.182)
N2: (88.858,126.991,0.791)
N3: (88.208,125.886,-1.103)
N7: (89.321,126.067,-4.511)
N9: (87.801,124.958,-3.303)
O5': (85.712,124.235,-6.616)
O3': (83.263,124.803,-3.779)
OP2: (86.434,125.621,-8.545)
C3': (84.673,124.728,-3.932)
C1': (86.713,124.047,-2.963)
C5': (84.952,123.212,-5.961)
O6: (91.101,128.128,-3.039)
O4': (86.451,123.214,-4.077)
C8: (88.369,125.172,-4.535)
C2: (88.987,126.772,-0.520)
C6: (90.220,127.419,-2.543)
C5: (89.384,126.465,-3.182)
C4: (88.457,125.785,-2.425)
P: (85.416,124.625,-8.129)
C4': (85.065,123.365,-4.471)
C2': (85.411,124.768,-2.603)
O2': (84.752,124.039,-1.588)
N1: (89.944,127.506,-1.182)
N2: (88.858,126.991,0.791)
N3: (88.208,125.886,-1.103)
N7: (89.321,126.067,-4.511)
N9: (87.801,124.958,-3.303)
O5': (85.712,124.235,-6.616)
O3': (83.263,124.803,-3.779)
OP1: (83.736,121.669,2.950)
OP2: (85.589,119.931,3.341)
C3': (84.098,119.570,-1.623)
C1': (86.225,119.920,-2.561)
C5': (84.340,121.514,0.074)
O6: (89.934,115.418,-1.207)
O4': (85.965,120.967,-1.640)
C8: (87.567,118.946,-0.639)
C2: (88.227,116.442,-4.149)
C6: (89.203,116.107,-1.926)
C5: (88.468,117.273,-1.586)
C4: (87.707,117.883,-2.553)
P: (85.049,121.081,2.573)
C4': (84.546,120.992,-1.328)
C2': (84.880,119.276,-2.893)
O2': (84.330,119.929,-4.020)
N1: (89.021,115.760,-3.260)
N2: (88.172,115.951,-5.391)
N3: (87.537,117.525,-3.841)
N7: (88.370,117.952,-0.383)
N9: (87.130,118.962,-1.937)
O5': (84.976,120.657,1.038)
O3': (82.692,119.458,-1.830)
OP2: (85.589,119.931,3.341)
C3': (84.098,119.570,-1.623)
C1': (86.225,119.920,-2.561)
C5': (84.340,121.514,0.074)
O6: (89.934,115.418,-1.207)
O4': (85.965,120.967,-1.640)
C8: (87.567,118.946,-0.639)
C2: (88.227,116.442,-4.149)
C6: (89.203,116.107,-1.926)
C5: (88.468,117.273,-1.586)
C4: (87.707,117.883,-2.553)
P: (85.049,121.081,2.573)
C4': (84.546,120.992,-1.328)
C2': (84.880,119.276,-2.893)
O2': (84.330,119.929,-4.020)
N1: (89.021,115.760,-3.260)
N2: (88.172,115.951,-5.391)
N3: (87.537,117.525,-3.841)
N7: (88.370,117.952,-0.383)
N9: (87.130,118.962,-1.937)
O5': (84.976,120.657,1.038)
O3': (82.692,119.458,-1.830)
Image (generated by PyMOL):