Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0237:0254
Extra
PDB:
ATOM 1 O3' A A 236 85.429 123.156 -9.004 1.00 46.17 O
ATOM 2 P G A 237 85.117 124.479 -8.155 1.00 50.40 P
ATOM 3 OP1 G A 237 83.658 124.739 -8.252 1.00 49.66 O
ATOM 4 OP2 G A 237 86.083 125.529 -8.558 1.00 50.58 O
ATOM 5 O5' G A 237 85.446 124.073 -6.653 1.00 52.37 O
ATOM 6 C5' G A 237 84.698 123.053 -5.980 1.00 51.27 C
ATOM 7 C4' G A 237 84.841 123.222 -4.494 1.00 50.17 C
ATOM 8 O4' G A 237 86.240 123.102 -4.136 1.00 49.16 O
ATOM 9 C3' G A 237 84.441 124.588 -3.965 1.00 49.10 C
ATOM 10 O3' G A 237 83.030 124.654 -3.781 1.00 50.64 O
ATOM 11 C2' G A 237 85.212 124.665 -2.656 1.00 48.80 C
ATOM 12 O2' G A 237 84.582 123.978 -1.596 1.00 48.53 O
ATOM 13 C1' G A 237 86.508 123.935 -3.024 1.00 50.51 C
ATOM 14 N9 G A 237 87.610 124.833 -3.352 1.00 52.23 N
ATOM 15 C8 G A 237 88.178 125.064 -4.581 1.00 53.53 C
ATOM 16 N7 G A 237 89.140 125.946 -4.541 1.00 54.52 N
ATOM 17 C5 G A 237 89.213 126.313 -3.204 1.00 54.14 C
ATOM 18 C6 G A 237 90.064 127.238 -2.546 1.00 54.34 C
ATOM 19 O6 G A 237 90.956 127.945 -3.028 1.00 55.53 O
ATOM 20 N1 G A 237 89.794 127.298 -1.183 1.00 54.19 N
ATOM 21 C2 G A 237 88.831 126.565 -0.536 1.00 54.53 C
ATOM 22 N2 G A 237 88.710 126.756 0.785 1.00 54.03 N
ATOM 23 N3 G A 237 88.037 125.705 -1.136 1.00 55.09 N
ATOM 24 C4 G A 237 88.280 125.630 -2.460 1.00 53.94 C
ATOM 25 P C A 238 82.313 126.073 -3.540 1.00 50.94 P
ATOM 26 OP1 C A 238 80.851 125.822 -3.483 1.00 49.78 O
ATOM 27 OP2 C A 238 82.847 127.048 -4.522 1.00 51.71 O
ATOM 28 O5' C A 238 82.795 126.508 -2.085 1.00 50.16 O
TER
ATOM 1 O3' U B 253 85.988 122.132 2.580 1.00 44.21 O
ATOM 2 P G B 254 84.920 120.935 2.547 1.00 47.15 P
ATOM 3 OP1 G B 254 83.607 121.513 2.958 1.00 45.32 O
ATOM 4 OP2 G B 254 85.485 119.771 3.286 1.00 44.90 O
ATOM 5 O5' G B 254 84.836 120.520 1.010 1.00 46.34 O
ATOM 6 C5' G B 254 84.245 121.399 0.041 1.00 46.08 C
ATOM 7 C4' G B 254 84.460 120.866 -1.356 1.00 46.67 C
ATOM 8 O4' G B 254 85.885 120.790 -1.638 1.00 45.88 O
ATOM 9 C3' G B 254 83.980 119.453 -1.643 1.00 46.78 C
ATOM 10 O3' G B 254 82.582 119.370 -1.882 1.00 49.25 O
ATOM 11 C2' G B 254 84.773 119.115 -2.894 1.00 46.14 C
ATOM 12 O2' G B 254 84.249 119.741 -4.049 1.00 45.58 O
ATOM 13 C1' G B 254 86.130 119.728 -2.548 1.00 45.19 C
ATOM 14 N9 G B 254 87.001 118.750 -1.906 1.00 44.35 N
ATOM 15 C8 G B 254 87.395 118.720 -0.594 1.00 44.63 C
ATOM 16 N7 G B 254 88.168 117.706 -0.316 1.00 45.02 N
ATOM 17 C5 G B 254 88.295 117.031 -1.519 1.00 44.75 C
ATOM 18 C6 G B 254 89.015 115.852 -1.837 1.00 45.70 C
ATOM 19 O6 G B 254 89.703 115.143 -1.093 1.00 46.64 O
ATOM 20 N1 G B 254 88.871 115.513 -3.177 1.00 46.27 N
ATOM 21 C2 G B 254 88.123 116.213 -4.091 1.00 46.75 C
ATOM 22 N2 G B 254 88.099 115.723 -5.335 1.00 48.05 N
ATOM 23 N3 G B 254 87.448 117.312 -3.805 1.00 45.89 N
ATOM 24 C4 G B 254 87.580 117.662 -2.510 1.00 44.79 C
ATOM 25 P G B 255 81.825 117.968 -1.673 1.00 50.24 P
ATOM 26 OP1 G B 255 80.376 118.207 -1.905 1.00 49.29 O
ATOM 27 OP2 G B 255 82.277 117.375 -0.388 1.00 51.20 O
ATOM 28 O5' G B 255 82.387 117.043 -2.839 1.00 50.01 O
TER
ATOM 2 P G A 237 85.117 124.479 -8.155 1.00 50.40 P
ATOM 3 OP1 G A 237 83.658 124.739 -8.252 1.00 49.66 O
ATOM 4 OP2 G A 237 86.083 125.529 -8.558 1.00 50.58 O
ATOM 5 O5' G A 237 85.446 124.073 -6.653 1.00 52.37 O
ATOM 6 C5' G A 237 84.698 123.053 -5.980 1.00 51.27 C
ATOM 7 C4' G A 237 84.841 123.222 -4.494 1.00 50.17 C
ATOM 8 O4' G A 237 86.240 123.102 -4.136 1.00 49.16 O
ATOM 9 C3' G A 237 84.441 124.588 -3.965 1.00 49.10 C
ATOM 10 O3' G A 237 83.030 124.654 -3.781 1.00 50.64 O
ATOM 11 C2' G A 237 85.212 124.665 -2.656 1.00 48.80 C
ATOM 12 O2' G A 237 84.582 123.978 -1.596 1.00 48.53 O
ATOM 13 C1' G A 237 86.508 123.935 -3.024 1.00 50.51 C
ATOM 14 N9 G A 237 87.610 124.833 -3.352 1.00 52.23 N
ATOM 15 C8 G A 237 88.178 125.064 -4.581 1.00 53.53 C
ATOM 16 N7 G A 237 89.140 125.946 -4.541 1.00 54.52 N
ATOM 17 C5 G A 237 89.213 126.313 -3.204 1.00 54.14 C
ATOM 18 C6 G A 237 90.064 127.238 -2.546 1.00 54.34 C
ATOM 19 O6 G A 237 90.956 127.945 -3.028 1.00 55.53 O
ATOM 20 N1 G A 237 89.794 127.298 -1.183 1.00 54.19 N
ATOM 21 C2 G A 237 88.831 126.565 -0.536 1.00 54.53 C
ATOM 22 N2 G A 237 88.710 126.756 0.785 1.00 54.03 N
ATOM 23 N3 G A 237 88.037 125.705 -1.136 1.00 55.09 N
ATOM 24 C4 G A 237 88.280 125.630 -2.460 1.00 53.94 C
ATOM 25 P C A 238 82.313 126.073 -3.540 1.00 50.94 P
ATOM 26 OP1 C A 238 80.851 125.822 -3.483 1.00 49.78 O
ATOM 27 OP2 C A 238 82.847 127.048 -4.522 1.00 51.71 O
ATOM 28 O5' C A 238 82.795 126.508 -2.085 1.00 50.16 O
TER
ATOM 1 O3' U B 253 85.988 122.132 2.580 1.00 44.21 O
ATOM 2 P G B 254 84.920 120.935 2.547 1.00 47.15 P
ATOM 3 OP1 G B 254 83.607 121.513 2.958 1.00 45.32 O
ATOM 4 OP2 G B 254 85.485 119.771 3.286 1.00 44.90 O
ATOM 5 O5' G B 254 84.836 120.520 1.010 1.00 46.34 O
ATOM 6 C5' G B 254 84.245 121.399 0.041 1.00 46.08 C
ATOM 7 C4' G B 254 84.460 120.866 -1.356 1.00 46.67 C
ATOM 8 O4' G B 254 85.885 120.790 -1.638 1.00 45.88 O
ATOM 9 C3' G B 254 83.980 119.453 -1.643 1.00 46.78 C
ATOM 10 O3' G B 254 82.582 119.370 -1.882 1.00 49.25 O
ATOM 11 C2' G B 254 84.773 119.115 -2.894 1.00 46.14 C
ATOM 12 O2' G B 254 84.249 119.741 -4.049 1.00 45.58 O
ATOM 13 C1' G B 254 86.130 119.728 -2.548 1.00 45.19 C
ATOM 14 N9 G B 254 87.001 118.750 -1.906 1.00 44.35 N
ATOM 15 C8 G B 254 87.395 118.720 -0.594 1.00 44.63 C
ATOM 16 N7 G B 254 88.168 117.706 -0.316 1.00 45.02 N
ATOM 17 C5 G B 254 88.295 117.031 -1.519 1.00 44.75 C
ATOM 18 C6 G B 254 89.015 115.852 -1.837 1.00 45.70 C
ATOM 19 O6 G B 254 89.703 115.143 -1.093 1.00 46.64 O
ATOM 20 N1 G B 254 88.871 115.513 -3.177 1.00 46.27 N
ATOM 21 C2 G B 254 88.123 116.213 -4.091 1.00 46.75 C
ATOM 22 N2 G B 254 88.099 115.723 -5.335 1.00 48.05 N
ATOM 23 N3 G B 254 87.448 117.312 -3.805 1.00 45.89 N
ATOM 24 C4 G B 254 87.580 117.662 -2.510 1.00 44.79 C
ATOM 25 P G B 255 81.825 117.968 -1.673 1.00 50.24 P
ATOM 26 OP1 G B 255 80.376 118.207 -1.905 1.00 49.29 O
ATOM 27 OP2 G B 255 82.277 117.375 -0.388 1.00 51.20 O
ATOM 28 O5' G B 255 82.387 117.043 -2.839 1.00 50.01 O
TER
Atoms:
OP1: (83.658,124.739,-8.252)
OP2: (86.083,125.529,-8.558)
C3': (84.441,124.588,-3.965)
C1': (86.508,123.935,-3.024)
C5': (84.698,123.053,-5.980)
O6: (90.956,127.945,-3.028)
O4': (86.240,123.102,-4.136)
C8: (88.178,125.064,-4.581)
C2: (88.831,126.565,-0.536)
C6: (90.064,127.238,-2.546)
C5: (89.213,126.313,-3.204)
C4: (88.280,125.630,-2.460)
P: (85.117,124.479,-8.155)
C4': (84.841,123.222,-4.494)
C2': (85.212,124.665,-2.656)
O2': (84.582,123.978,-1.596)
N1: (89.794,127.298,-1.183)
N2: (88.710,126.756,0.785)
N3: (88.037,125.705,-1.136)
N7: (89.140,125.946,-4.541)
N9: (87.610,124.833,-3.352)
O5': (85.446,124.073,-6.653)
O3': (83.030,124.654,-3.781)
OP2: (86.083,125.529,-8.558)
C3': (84.441,124.588,-3.965)
C1': (86.508,123.935,-3.024)
C5': (84.698,123.053,-5.980)
O6: (90.956,127.945,-3.028)
O4': (86.240,123.102,-4.136)
C8: (88.178,125.064,-4.581)
C2: (88.831,126.565,-0.536)
C6: (90.064,127.238,-2.546)
C5: (89.213,126.313,-3.204)
C4: (88.280,125.630,-2.460)
P: (85.117,124.479,-8.155)
C4': (84.841,123.222,-4.494)
C2': (85.212,124.665,-2.656)
O2': (84.582,123.978,-1.596)
N1: (89.794,127.298,-1.183)
N2: (88.710,126.756,0.785)
N3: (88.037,125.705,-1.136)
N7: (89.140,125.946,-4.541)
N9: (87.610,124.833,-3.352)
O5': (85.446,124.073,-6.653)
O3': (83.030,124.654,-3.781)
OP1: (83.607,121.513,2.958)
OP2: (85.485,119.771,3.286)
C3': (83.980,119.453,-1.643)
C1': (86.130,119.728,-2.548)
C5': (84.245,121.399,0.041)
O6: (89.703,115.143,-1.093)
O4': (85.885,120.790,-1.638)
C8: (87.395,118.720,-0.594)
C2: (88.123,116.213,-4.091)
C6: (89.015,115.852,-1.837)
C5: (88.295,117.031,-1.519)
C4: (87.580,117.662,-2.510)
P: (84.920,120.935,2.547)
C4': (84.460,120.866,-1.356)
C2': (84.773,119.115,-2.894)
O2': (84.249,119.741,-4.049)
N1: (88.871,115.513,-3.177)
N2: (88.099,115.723,-5.335)
N3: (87.448,117.312,-3.805)
N7: (88.168,117.706,-0.316)
N9: (87.001,118.750,-1.906)
O5': (84.836,120.520,1.010)
O3': (82.582,119.370,-1.882)
OP2: (85.485,119.771,3.286)
C3': (83.980,119.453,-1.643)
C1': (86.130,119.728,-2.548)
C5': (84.245,121.399,0.041)
O6: (89.703,115.143,-1.093)
O4': (85.885,120.790,-1.638)
C8: (87.395,118.720,-0.594)
C2: (88.123,116.213,-4.091)
C6: (89.015,115.852,-1.837)
C5: (88.295,117.031,-1.519)
C4: (87.580,117.662,-2.510)
P: (84.920,120.935,2.547)
C4': (84.460,120.866,-1.356)
C2': (84.773,119.115,-2.894)
O2': (84.249,119.741,-4.049)
N1: (88.871,115.513,-3.177)
N2: (88.099,115.723,-5.335)
N3: (87.448,117.312,-3.805)
N7: (88.168,117.706,-0.316)
N9: (87.001,118.750,-1.906)
O5': (84.836,120.520,1.010)
O3': (82.582,119.370,-1.882)
Image (generated by PyMOL):