Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD3:B4:A5
Extra
PDB:
ATOM 1 O3' C A 3 19.910 -8.677 75.445 1.00 26.14 O
ATOM 2 P A A 4 18.960 -7.404 75.204 1.00 30.12 P
ATOM 3 OP1 A A 4 18.933 -7.138 73.743 1.00 29.99 O
ATOM 4 OP2 A A 4 19.332 -6.318 76.140 1.00 29.90 O
ATOM 5 O5' A A 4 17.525 -7.940 75.625 1.00 27.40 O
ATOM 6 C5' A A 4 16.477 -8.038 74.672 1.00 27.45 C
ATOM 7 C4' A A 4 16.563 -9.352 73.938 1.00 25.45 C
ATOM 8 O4' A A 4 16.889 -10.411 74.868 1.00 24.00 O
ATOM 9 C3' A A 4 15.260 -9.772 73.279 1.00 25.44 C
ATOM 10 O3' A A 4 15.189 -9.246 71.961 1.00 27.70 O
ATOM 11 C2' A A 4 15.356 -11.287 73.293 1.00 24.51 C
ATOM 12 O2' A A 4 16.159 -11.787 72.240 1.00 25.35 O
ATOM 13 C1' A A 4 16.046 -11.522 74.639 1.00 23.44 C
ATOM 14 N9 A A 4 15.127 -11.602 75.775 1.00 22.03 N
ATOM 15 C8 A A 4 15.145 -10.807 76.895 1.00 21.67 C
ATOM 16 N7 A A 4 14.224 -11.114 77.778 1.00 20.52 N
ATOM 17 C5 A A 4 13.550 -12.181 77.199 1.00 21.18 C
ATOM 18 C6 A A 4 12.466 -12.963 77.640 1.00 21.00 C
ATOM 19 N6 A A 4 11.854 -12.784 78.818 1.00 20.62 N
ATOM 20 N1 A A 4 12.028 -13.947 76.821 1.00 22.91 N
ATOM 21 C2 A A 4 12.644 -14.120 75.640 1.00 20.43 C
ATOM 22 N3 A A 4 13.672 -13.448 75.116 1.00 20.11 N
ATOM 23 C4 A A 4 14.087 -12.484 75.957 1.00 21.36 C
ATOM 24 P C A 5 14.059 -8.170 71.604 1.00 28.28 P
ATOM 25 OP1 C A 5 14.151 -7.881 70.146 1.00 28.42 O
ATOM 26 OP2 C A 5 14.138 -7.055 72.577 1.00 24.46 O
ATOM 27 O5' C A 5 12.705 -8.963 71.859 1.00 27.59 O
TER
ATOM 1 O3' A B 4 12.917 -6.945 86.924 1.00 28.20 O
ATOM 2 P C B 5 14.012 -8.073 87.255 1.00 29.34 P
ATOM 3 OP1 C B 5 14.355 -7.971 88.701 1.00 30.62 O
ATOM 4 OP2 C B 5 15.091 -8.001 86.241 1.00 25.81 O
ATOM 5 O5' C B 5 13.211 -9.428 87.035 1.00 28.79 O
ATOM 6 C5' C B 5 11.933 -9.614 87.622 1.00 27.74 C
ATOM 7 C4' C B 5 11.141 -10.612 86.822 1.00 27.39 C
ATOM 8 O4' C B 5 10.865 -10.069 85.503 1.00 25.97 O
ATOM 9 C3' C B 5 11.879 -11.900 86.515 1.00 26.56 C
ATOM 10 O3' C B 5 11.829 -12.790 87.618 1.00 30.07 O
ATOM 11 C2' C B 5 11.106 -12.422 85.316 1.00 25.44 C
ATOM 12 O2' C B 5 9.874 -12.994 85.700 1.00 23.06 O
ATOM 13 C1' C B 5 10.837 -11.124 84.556 1.00 24.37 C
ATOM 14 N1 C B 5 11.834 -10.840 83.516 1.00 22.97 N
ATOM 15 C2 C B 5 11.728 -11.510 82.292 1.00 21.22 C
ATOM 16 O2 C B 5 10.839 -12.355 82.151 1.00 22.82 O
ATOM 17 N3 C B 5 12.602 -11.221 81.301 1.00 20.92 N
ATOM 18 C4 C B 5 13.560 -10.315 81.503 1.00 20.53 C
ATOM 19 N4 C B 5 14.384 -10.039 80.488 1.00 21.70 N
ATOM 20 C5 C B 5 13.713 -9.643 82.754 1.00 22.37 C
ATOM 21 C6 C B 5 12.835 -9.935 83.724 1.00 21.40 C
ATOM 22 P A B 6 12.821 -14.045 87.652 1.00 30.65 P
ATOM 23 OP1 A B 6 12.501 -14.829 88.873 1.00 32.31 O
ATOM 24 OP2 A B 6 14.208 -13.577 87.420 1.00 30.42 O
ATOM 25 O5' A B 6 12.363 -14.873 86.372 1.00 30.49 O
TER
ATOM 2 P A A 4 18.960 -7.404 75.204 1.00 30.12 P
ATOM 3 OP1 A A 4 18.933 -7.138 73.743 1.00 29.99 O
ATOM 4 OP2 A A 4 19.332 -6.318 76.140 1.00 29.90 O
ATOM 5 O5' A A 4 17.525 -7.940 75.625 1.00 27.40 O
ATOM 6 C5' A A 4 16.477 -8.038 74.672 1.00 27.45 C
ATOM 7 C4' A A 4 16.563 -9.352 73.938 1.00 25.45 C
ATOM 8 O4' A A 4 16.889 -10.411 74.868 1.00 24.00 O
ATOM 9 C3' A A 4 15.260 -9.772 73.279 1.00 25.44 C
ATOM 10 O3' A A 4 15.189 -9.246 71.961 1.00 27.70 O
ATOM 11 C2' A A 4 15.356 -11.287 73.293 1.00 24.51 C
ATOM 12 O2' A A 4 16.159 -11.787 72.240 1.00 25.35 O
ATOM 13 C1' A A 4 16.046 -11.522 74.639 1.00 23.44 C
ATOM 14 N9 A A 4 15.127 -11.602 75.775 1.00 22.03 N
ATOM 15 C8 A A 4 15.145 -10.807 76.895 1.00 21.67 C
ATOM 16 N7 A A 4 14.224 -11.114 77.778 1.00 20.52 N
ATOM 17 C5 A A 4 13.550 -12.181 77.199 1.00 21.18 C
ATOM 18 C6 A A 4 12.466 -12.963 77.640 1.00 21.00 C
ATOM 19 N6 A A 4 11.854 -12.784 78.818 1.00 20.62 N
ATOM 20 N1 A A 4 12.028 -13.947 76.821 1.00 22.91 N
ATOM 21 C2 A A 4 12.644 -14.120 75.640 1.00 20.43 C
ATOM 22 N3 A A 4 13.672 -13.448 75.116 1.00 20.11 N
ATOM 23 C4 A A 4 14.087 -12.484 75.957 1.00 21.36 C
ATOM 24 P C A 5 14.059 -8.170 71.604 1.00 28.28 P
ATOM 25 OP1 C A 5 14.151 -7.881 70.146 1.00 28.42 O
ATOM 26 OP2 C A 5 14.138 -7.055 72.577 1.00 24.46 O
ATOM 27 O5' C A 5 12.705 -8.963 71.859 1.00 27.59 O
TER
ATOM 1 O3' A B 4 12.917 -6.945 86.924 1.00 28.20 O
ATOM 2 P C B 5 14.012 -8.073 87.255 1.00 29.34 P
ATOM 3 OP1 C B 5 14.355 -7.971 88.701 1.00 30.62 O
ATOM 4 OP2 C B 5 15.091 -8.001 86.241 1.00 25.81 O
ATOM 5 O5' C B 5 13.211 -9.428 87.035 1.00 28.79 O
ATOM 6 C5' C B 5 11.933 -9.614 87.622 1.00 27.74 C
ATOM 7 C4' C B 5 11.141 -10.612 86.822 1.00 27.39 C
ATOM 8 O4' C B 5 10.865 -10.069 85.503 1.00 25.97 O
ATOM 9 C3' C B 5 11.879 -11.900 86.515 1.00 26.56 C
ATOM 10 O3' C B 5 11.829 -12.790 87.618 1.00 30.07 O
ATOM 11 C2' C B 5 11.106 -12.422 85.316 1.00 25.44 C
ATOM 12 O2' C B 5 9.874 -12.994 85.700 1.00 23.06 O
ATOM 13 C1' C B 5 10.837 -11.124 84.556 1.00 24.37 C
ATOM 14 N1 C B 5 11.834 -10.840 83.516 1.00 22.97 N
ATOM 15 C2 C B 5 11.728 -11.510 82.292 1.00 21.22 C
ATOM 16 O2 C B 5 10.839 -12.355 82.151 1.00 22.82 O
ATOM 17 N3 C B 5 12.602 -11.221 81.301 1.00 20.92 N
ATOM 18 C4 C B 5 13.560 -10.315 81.503 1.00 20.53 C
ATOM 19 N4 C B 5 14.384 -10.039 80.488 1.00 21.70 N
ATOM 20 C5 C B 5 13.713 -9.643 82.754 1.00 22.37 C
ATOM 21 C6 C B 5 12.835 -9.935 83.724 1.00 21.40 C
ATOM 22 P A B 6 12.821 -14.045 87.652 1.00 30.65 P
ATOM 23 OP1 A B 6 12.501 -14.829 88.873 1.00 32.31 O
ATOM 24 OP2 A B 6 14.208 -13.577 87.420 1.00 30.42 O
ATOM 25 O5' A B 6 12.363 -14.873 86.372 1.00 30.49 O
TER
Atoms:
OP1: (18.933,-7.138,73.743)
OP2: (19.332,-6.318,76.140)
C3': (15.260,-9.772,73.279)
C1': (16.046,-11.522,74.639)
C5': (16.477,-8.038,74.672)
O4': (16.889,-10.411,74.868)
C8: (15.145,-10.807,76.895)
O2': (16.159,-11.787,72.240)
C6: (12.466,-12.963,77.640)
C5: (13.550,-12.181,77.199)
C4: (14.087,-12.484,75.957)
P: (18.960,-7.404,75.204)
C4': (16.563,-9.352,73.938)
C2': (15.356,-11.287,73.293)
C2: (12.644,-14.120,75.640)
N1: (12.028,-13.947,76.821)
N3: (13.672,-13.448,75.116)
N6: (11.854,-12.784,78.818)
N7: (14.224,-11.114,77.778)
N9: (15.127,-11.602,75.775)
O5': (17.525,-7.940,75.625)
O3': (15.189,-9.246,71.961)
OP2: (19.332,-6.318,76.140)
C3': (15.260,-9.772,73.279)
C1': (16.046,-11.522,74.639)
C5': (16.477,-8.038,74.672)
O4': (16.889,-10.411,74.868)
C8: (15.145,-10.807,76.895)
O2': (16.159,-11.787,72.240)
C6: (12.466,-12.963,77.640)
C5: (13.550,-12.181,77.199)
C4: (14.087,-12.484,75.957)
P: (18.960,-7.404,75.204)
C4': (16.563,-9.352,73.938)
C2': (15.356,-11.287,73.293)
C2: (12.644,-14.120,75.640)
N1: (12.028,-13.947,76.821)
N3: (13.672,-13.448,75.116)
N6: (11.854,-12.784,78.818)
N7: (14.224,-11.114,77.778)
N9: (15.127,-11.602,75.775)
O5': (17.525,-7.940,75.625)
O3': (15.189,-9.246,71.961)
C2: (11.728,-11.510,82.292)
OP1: (14.355,-7.971,88.701)
OP2: (15.091,-8.001,86.241)
C4: (13.560,-10.315,81.503)
O5': (13.211,-9.428,87.035)
C3': (11.879,-11.900,86.515)
C1': (10.837,-11.124,84.556)
O4': (10.865,-10.069,85.503)
C5': (11.933,-9.614,87.622)
P: (14.012,-8.073,87.255)
O2: (10.839,-12.355,82.151)
C4': (11.141,-10.612,86.822)
C2': (11.106,-12.422,85.316)
O2': (9.874,-12.994,85.700)
N1: (11.834,-10.840,83.516)
N3: (12.602,-11.221,81.301)
N4: (14.384,-10.039,80.488)
C6: (12.835,-9.935,83.724)
C5: (13.713,-9.643,82.754)
O3': (11.829,-12.790,87.618)
OP1: (14.355,-7.971,88.701)
OP2: (15.091,-8.001,86.241)
C4: (13.560,-10.315,81.503)
O5': (13.211,-9.428,87.035)
C3': (11.879,-11.900,86.515)
C1': (10.837,-11.124,84.556)
O4': (10.865,-10.069,85.503)
C5': (11.933,-9.614,87.622)
P: (14.012,-8.073,87.255)
O2: (10.839,-12.355,82.151)
C4': (11.141,-10.612,86.822)
C2': (11.106,-12.422,85.316)
O2': (9.874,-12.994,85.700)
N1: (11.834,-10.840,83.516)
N3: (12.602,-11.221,81.301)
N4: (14.384,-10.039,80.488)
C6: (12.835,-9.935,83.724)
C5: (13.713,-9.643,82.754)
O3': (11.829,-12.790,87.618)
Image (generated by PyMOL):