Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A23:A84
Extra
PDB:
ATOM 1 O3' G A 22 5.482 -10.670 21.688 1.00102.53 O
ATOM 2 P A A 23 5.439 -12.098 20.968 1.00105.11 P
ATOM 3 OP1 A A 23 5.298 -13.178 21.970 1.00106.14 O
ATOM 4 OP2 A A 23 6.526 -12.187 19.970 1.00106.00 O
ATOM 5 O5' A A 23 4.080 -11.977 20.162 1.00102.72 O
ATOM 6 C5' A A 23 3.006 -11.222 20.669 1.00100.98 C
ATOM 7 C4' A A 23 1.788 -11.653 19.892 1.00 99.28 C
ATOM 8 O4' A A 23 2.239 -12.120 18.596 1.00 97.03 O
ATOM 9 C3' A A 23 1.041 -12.829 20.497 1.00 99.06 C
ATOM 10 O3' A A 23 0.034 -12.378 21.406 1.00100.12 O
ATOM 11 C2' A A 23 0.441 -13.481 19.255 1.00 98.20 C
ATOM 12 O2' A A 23 -0.768 -12.856 18.869 1.00100.58 O
ATOM 13 C1' A A 23 1.476 -13.229 18.172 1.00 95.40 C
ATOM 14 N9 A A 23 2.409 -14.290 17.834 1.00 92.30 N
ATOM 15 C8 A A 23 3.744 -14.329 18.098 1.00 92.75 C
ATOM 16 N7 A A 23 4.351 -15.391 17.634 1.00 92.53 N
ATOM 17 C5 A A 23 3.356 -16.102 17.010 1.00 91.73 C
ATOM 18 C6 A A 23 3.370 -17.330 16.303 1.00 93.05 C
ATOM 19 N6 A A 23 4.479 -18.073 16.131 1.00 93.74 N
ATOM 20 N1 A A 23 2.193 -17.771 15.789 1.00 91.93 N
ATOM 21 C2 A A 23 1.097 -17.017 15.983 1.00 92.34 C
ATOM 22 N3 A A 23 0.973 -15.838 16.626 1.00 92.47 N
ATOM 23 C4 A A 23 2.152 -15.431 17.124 1.00 91.83 C
ATOM 24 P C A 24 -0.365 -13.312 22.637 1.00101.39 P
ATOM 25 OP1 C A 24 -1.647 -12.879 23.229 1.00 99.17 O
ATOM 26 OP2 C A 24 0.806 -13.352 23.548 1.00102.18 O
ATOM 27 O5' C A 24 -0.580 -14.703 21.856 1.00100.62 O
TER
ATOM 1 O3' A B 83 3.659 -24.014 8.206 1.00100.97 O
ATOM 2 P A B 84 3.268 -22.649 7.471 1.00101.47 P
ATOM 3 OP1 A B 84 1.920 -22.905 6.881 1.00100.98 O
ATOM 4 OP2 A B 84 4.430 -22.261 6.612 1.00 98.56 O
ATOM 5 O5' A B 84 3.022 -21.621 8.689 1.00 97.07 O
ATOM 6 C5' A B 84 1.910 -21.889 9.549 1.00 94.95 C
ATOM 7 C4' A B 84 2.154 -21.426 10.967 1.00 94.09 C
ATOM 8 O4' A B 84 3.294 -22.087 11.574 1.00 93.28 O
ATOM 9 C3' A B 84 2.515 -19.966 11.049 1.00 93.54 C
ATOM 10 O3' A B 84 1.354 -19.178 10.817 1.00 92.70 O
ATOM 11 C2' A B 84 3.151 -19.869 12.437 1.00 92.89 C
ATOM 12 O2' A B 84 2.274 -19.832 13.537 1.00 92.80 O
ATOM 13 C1' A B 84 3.973 -21.162 12.421 1.00 92.43 C
ATOM 14 N9 A B 84 5.327 -20.907 11.909 1.00 91.21 N
ATOM 15 C8 A B 84 5.874 -21.349 10.733 1.00 89.99 C
ATOM 16 N7 A B 84 7.103 -20.941 10.532 1.00 89.76 N
ATOM 17 C5 A B 84 7.390 -20.166 11.649 1.00 89.36 C
ATOM 18 C6 A B 84 8.541 -19.444 12.037 1.00 89.95 C
ATOM 19 N6 A B 84 9.663 -19.406 11.296 1.00 90.23 N
ATOM 20 N1 A B 84 8.498 -18.772 13.215 1.00 88.46 N
ATOM 21 C2 A B 84 7.377 -18.828 13.938 1.00 86.48 C
ATOM 22 N3 A B 84 6.239 -19.475 13.679 1.00 86.86 N
ATOM 23 C4 A B 84 6.308 -20.133 12.509 1.00 89.31 C
ATOM 24 P G B 85 1.538 -17.867 9.910 1.00 92.98 P
ATOM 25 OP1 G B 85 0.212 -17.250 9.673 1.00 92.35 O
ATOM 26 OP2 G B 85 2.448 -18.174 8.774 1.00 89.77 O
ATOM 27 O5' G B 85 2.324 -16.944 10.941 1.00 89.22 O
TER
ATOM 2 P A A 23 5.439 -12.098 20.968 1.00105.11 P
ATOM 3 OP1 A A 23 5.298 -13.178 21.970 1.00106.14 O
ATOM 4 OP2 A A 23 6.526 -12.187 19.970 1.00106.00 O
ATOM 5 O5' A A 23 4.080 -11.977 20.162 1.00102.72 O
ATOM 6 C5' A A 23 3.006 -11.222 20.669 1.00100.98 C
ATOM 7 C4' A A 23 1.788 -11.653 19.892 1.00 99.28 C
ATOM 8 O4' A A 23 2.239 -12.120 18.596 1.00 97.03 O
ATOM 9 C3' A A 23 1.041 -12.829 20.497 1.00 99.06 C
ATOM 10 O3' A A 23 0.034 -12.378 21.406 1.00100.12 O
ATOM 11 C2' A A 23 0.441 -13.481 19.255 1.00 98.20 C
ATOM 12 O2' A A 23 -0.768 -12.856 18.869 1.00100.58 O
ATOM 13 C1' A A 23 1.476 -13.229 18.172 1.00 95.40 C
ATOM 14 N9 A A 23 2.409 -14.290 17.834 1.00 92.30 N
ATOM 15 C8 A A 23 3.744 -14.329 18.098 1.00 92.75 C
ATOM 16 N7 A A 23 4.351 -15.391 17.634 1.00 92.53 N
ATOM 17 C5 A A 23 3.356 -16.102 17.010 1.00 91.73 C
ATOM 18 C6 A A 23 3.370 -17.330 16.303 1.00 93.05 C
ATOM 19 N6 A A 23 4.479 -18.073 16.131 1.00 93.74 N
ATOM 20 N1 A A 23 2.193 -17.771 15.789 1.00 91.93 N
ATOM 21 C2 A A 23 1.097 -17.017 15.983 1.00 92.34 C
ATOM 22 N3 A A 23 0.973 -15.838 16.626 1.00 92.47 N
ATOM 23 C4 A A 23 2.152 -15.431 17.124 1.00 91.83 C
ATOM 24 P C A 24 -0.365 -13.312 22.637 1.00101.39 P
ATOM 25 OP1 C A 24 -1.647 -12.879 23.229 1.00 99.17 O
ATOM 26 OP2 C A 24 0.806 -13.352 23.548 1.00102.18 O
ATOM 27 O5' C A 24 -0.580 -14.703 21.856 1.00100.62 O
TER
ATOM 1 O3' A B 83 3.659 -24.014 8.206 1.00100.97 O
ATOM 2 P A B 84 3.268 -22.649 7.471 1.00101.47 P
ATOM 3 OP1 A B 84 1.920 -22.905 6.881 1.00100.98 O
ATOM 4 OP2 A B 84 4.430 -22.261 6.612 1.00 98.56 O
ATOM 5 O5' A B 84 3.022 -21.621 8.689 1.00 97.07 O
ATOM 6 C5' A B 84 1.910 -21.889 9.549 1.00 94.95 C
ATOM 7 C4' A B 84 2.154 -21.426 10.967 1.00 94.09 C
ATOM 8 O4' A B 84 3.294 -22.087 11.574 1.00 93.28 O
ATOM 9 C3' A B 84 2.515 -19.966 11.049 1.00 93.54 C
ATOM 10 O3' A B 84 1.354 -19.178 10.817 1.00 92.70 O
ATOM 11 C2' A B 84 3.151 -19.869 12.437 1.00 92.89 C
ATOM 12 O2' A B 84 2.274 -19.832 13.537 1.00 92.80 O
ATOM 13 C1' A B 84 3.973 -21.162 12.421 1.00 92.43 C
ATOM 14 N9 A B 84 5.327 -20.907 11.909 1.00 91.21 N
ATOM 15 C8 A B 84 5.874 -21.349 10.733 1.00 89.99 C
ATOM 16 N7 A B 84 7.103 -20.941 10.532 1.00 89.76 N
ATOM 17 C5 A B 84 7.390 -20.166 11.649 1.00 89.36 C
ATOM 18 C6 A B 84 8.541 -19.444 12.037 1.00 89.95 C
ATOM 19 N6 A B 84 9.663 -19.406 11.296 1.00 90.23 N
ATOM 20 N1 A B 84 8.498 -18.772 13.215 1.00 88.46 N
ATOM 21 C2 A B 84 7.377 -18.828 13.938 1.00 86.48 C
ATOM 22 N3 A B 84 6.239 -19.475 13.679 1.00 86.86 N
ATOM 23 C4 A B 84 6.308 -20.133 12.509 1.00 89.31 C
ATOM 24 P G B 85 1.538 -17.867 9.910 1.00 92.98 P
ATOM 25 OP1 G B 85 0.212 -17.250 9.673 1.00 92.35 O
ATOM 26 OP2 G B 85 2.448 -18.174 8.774 1.00 89.77 O
ATOM 27 O5' G B 85 2.324 -16.944 10.941 1.00 89.22 O
TER
Atoms:
OP1: (5.298,-13.178,21.970)
OP2: (6.526,-12.187,19.970)
C3': (1.041,-12.829,20.497)
C1': (1.476,-13.229,18.172)
C5': (3.006,-11.222,20.669)
O4': (2.239,-12.120,18.596)
C8: (3.744,-14.329,18.098)
O2': (-0.768,-12.856,18.869)
C6: (3.370,-17.330,16.303)
C5: (3.356,-16.102,17.010)
C4: (2.152,-15.431,17.124)
P: (5.439,-12.098,20.968)
C4': (1.788,-11.653,19.892)
C2': (0.441,-13.481,19.255)
C2: (1.097,-17.017,15.983)
N1: (2.193,-17.771,15.789)
N3: (0.973,-15.838,16.626)
N6: (4.479,-18.073,16.131)
N7: (4.351,-15.391,17.634)
N9: (2.409,-14.290,17.834)
O5': (4.080,-11.977,20.162)
O3': (0.034,-12.378,21.406)
OP2: (6.526,-12.187,19.970)
C3': (1.041,-12.829,20.497)
C1': (1.476,-13.229,18.172)
C5': (3.006,-11.222,20.669)
O4': (2.239,-12.120,18.596)
C8: (3.744,-14.329,18.098)
O2': (-0.768,-12.856,18.869)
C6: (3.370,-17.330,16.303)
C5: (3.356,-16.102,17.010)
C4: (2.152,-15.431,17.124)
P: (5.439,-12.098,20.968)
C4': (1.788,-11.653,19.892)
C2': (0.441,-13.481,19.255)
C2: (1.097,-17.017,15.983)
N1: (2.193,-17.771,15.789)
N3: (0.973,-15.838,16.626)
N6: (4.479,-18.073,16.131)
N7: (4.351,-15.391,17.634)
N9: (2.409,-14.290,17.834)
O5': (4.080,-11.977,20.162)
O3': (0.034,-12.378,21.406)
OP1: (1.920,-22.905,6.881)
OP2: (4.430,-22.261,6.612)
C3': (2.515,-19.966,11.049)
C1': (3.973,-21.162,12.421)
C5': (1.910,-21.889,9.549)
O4': (3.294,-22.087,11.574)
C8: (5.874,-21.349,10.733)
O2': (2.274,-19.832,13.537)
C6: (8.541,-19.444,12.037)
C5: (7.390,-20.166,11.649)
C4: (6.308,-20.133,12.509)
P: (3.268,-22.649,7.471)
C4': (2.154,-21.426,10.967)
C2': (3.151,-19.869,12.437)
C2: (7.377,-18.828,13.938)
N1: (8.498,-18.772,13.215)
N3: (6.239,-19.475,13.679)
N6: (9.663,-19.406,11.296)
N7: (7.103,-20.941,10.532)
N9: (5.327,-20.907,11.909)
O5': (3.022,-21.621,8.689)
O3': (1.354,-19.178,10.817)
OP2: (4.430,-22.261,6.612)
C3': (2.515,-19.966,11.049)
C1': (3.973,-21.162,12.421)
C5': (1.910,-21.889,9.549)
O4': (3.294,-22.087,11.574)
C8: (5.874,-21.349,10.733)
O2': (2.274,-19.832,13.537)
C6: (8.541,-19.444,12.037)
C5: (7.390,-20.166,11.649)
C4: (6.308,-20.133,12.509)
P: (3.268,-22.649,7.471)
C4': (2.154,-21.426,10.967)
C2': (3.151,-19.869,12.437)
C2: (7.377,-18.828,13.938)
N1: (8.498,-18.772,13.215)
N3: (6.239,-19.475,13.679)
N6: (9.663,-19.406,11.296)
N7: (7.103,-20.941,10.532)
N9: (5.327,-20.907,11.909)
O5': (3.022,-21.621,8.689)
O3': (1.354,-19.178,10.817)
Image (generated by PyMOL):