Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12419:12443
Extra
PDB:
ATOM 1 O3' C A2418 4.561 -64.048 36.820 1.00 55.98 O
ATOM 2 P A A2419 3.204 -63.442 36.176 1.00 58.31 P
ATOM 3 OP1 A A2419 2.254 -63.183 37.290 1.00 58.14 O
ATOM 4 OP2 A A2419 2.806 -64.365 35.113 1.00 58.95 O
ATOM 5 O5' A A2419 3.673 -62.057 35.543 1.00 57.91 O
ATOM 6 C5' A A2419 4.043 -60.971 36.383 1.00 57.29 C
ATOM 7 C4' A A2419 4.380 -59.726 35.597 1.00 57.02 C
ATOM 8 O4' A A2419 5.567 -59.951 34.798 1.00 57.07 O
ATOM 9 C3' A A2419 3.345 -59.255 34.587 1.00 57.30 C
ATOM 10 O3' A A2419 2.299 -58.529 35.192 1.00 57.12 O
ATOM 11 C2' A A2419 4.184 -58.406 33.649 1.00 57.11 C
ATOM 12 O2' A A2419 4.445 -57.140 34.238 1.00 56.53 O
ATOM 13 C1' A A2419 5.496 -59.194 33.611 1.00 57.13 C
ATOM 14 N9 A A2419 5.534 -60.115 32.483 1.00 57.70 N
ATOM 15 C8 A A2419 5.528 -61.473 32.517 1.00 58.13 C
ATOM 16 N7 A A2419 5.572 -62.006 31.317 1.00 58.61 N
ATOM 17 C5 A A2419 5.594 -60.923 30.460 1.00 58.47 C
ATOM 18 C6 A A2419 5.626 -60.822 29.066 1.00 58.81 C
ATOM 19 N6 A A2419 5.630 -61.855 28.219 1.00 59.39 N
ATOM 20 N1 A A2419 5.657 -59.578 28.556 1.00 58.55 N
ATOM 21 C2 A A2419 5.654 -58.530 29.395 1.00 57.99 C
ATOM 22 N3 A A2419 5.617 -58.499 30.724 1.00 57.63 N
ATOM 23 C4 A A2419 5.584 -59.749 31.185 1.00 57.90 C
ATOM 24 P U A2420 0.770 -58.796 34.779 1.00 58.31 P
ATOM 25 OP1 U A2420 -0.037 -57.728 35.453 1.00 57.98 O
ATOM 26 OP2 U A2420 0.461 -60.224 35.084 1.00 58.75 O
ATOM 27 O5' U A2420 0.781 -58.580 33.191 1.00 58.63 O
TER
ATOM 1 O3' G B2442 7.931 -54.247 32.896 1.00 54.73 O
ATOM 2 P A B2443 6.907 -54.697 34.020 1.00 55.72 P
ATOM 3 OP1 A B2443 5.661 -55.120 33.301 1.00 56.23 O
ATOM 4 OP2 A B2443 6.825 -53.597 35.022 1.00 55.18 O
ATOM 5 O5' A B2443 7.618 -55.972 34.671 1.00 55.82 O
ATOM 6 C5' A B2443 7.851 -56.047 36.070 1.00 55.47 C
ATOM 7 C4' A B2443 7.476 -57.394 36.620 1.00 55.81 C
ATOM 8 O4' A B2443 8.206 -58.438 35.946 1.00 56.17 O
ATOM 9 C3' A B2443 7.782 -57.620 38.074 1.00 55.51 C
ATOM 10 O3' A B2443 6.803 -57.058 38.898 1.00 55.33 O
ATOM 11 C2' A B2443 7.819 -59.129 38.173 1.00 55.95 C
ATOM 12 O2' A B2443 6.498 -59.631 38.307 1.00 56.30 O
ATOM 13 C1' A B2443 8.361 -59.532 36.801 1.00 56.29 C
ATOM 14 N9 A B2443 9.783 -59.899 36.834 1.00 56.18 N
ATOM 15 C8 A B2443 10.868 -59.144 36.435 1.00 55.87 C
ATOM 16 N7 A B2443 12.035 -59.734 36.567 1.00 55.85 N
ATOM 17 C5 A B2443 11.709 -60.978 37.069 1.00 56.19 C
ATOM 18 C6 A B2443 12.498 -62.081 37.412 1.00 56.37 C
ATOM 19 N6 A B2443 13.821 -62.119 37.310 1.00 56.22 N
ATOM 20 N1 A B2443 11.874 -63.182 37.870 1.00 56.73 N
ATOM 21 C2 A B2443 10.528 -63.139 37.975 1.00 56.88 C
ATOM 22 N3 A B2443 9.661 -62.162 37.701 1.00 56.75 N
ATOM 23 C4 A B2443 10.328 -61.092 37.243 1.00 56.39 C
ATOM 24 P A B2444 7.180 -56.478 40.327 1.00 50.75 P
ATOM 25 OP1 A B2444 5.922 -56.034 40.971 1.00 50.70 O
ATOM 26 OP2 A B2444 8.288 -55.483 40.121 1.00 50.32 O
ATOM 27 O5' A B2444 7.758 -57.742 41.083 1.00 50.88 O
TER
ATOM 2 P A A2419 3.204 -63.442 36.176 1.00 58.31 P
ATOM 3 OP1 A A2419 2.254 -63.183 37.290 1.00 58.14 O
ATOM 4 OP2 A A2419 2.806 -64.365 35.113 1.00 58.95 O
ATOM 5 O5' A A2419 3.673 -62.057 35.543 1.00 57.91 O
ATOM 6 C5' A A2419 4.043 -60.971 36.383 1.00 57.29 C
ATOM 7 C4' A A2419 4.380 -59.726 35.597 1.00 57.02 C
ATOM 8 O4' A A2419 5.567 -59.951 34.798 1.00 57.07 O
ATOM 9 C3' A A2419 3.345 -59.255 34.587 1.00 57.30 C
ATOM 10 O3' A A2419 2.299 -58.529 35.192 1.00 57.12 O
ATOM 11 C2' A A2419 4.184 -58.406 33.649 1.00 57.11 C
ATOM 12 O2' A A2419 4.445 -57.140 34.238 1.00 56.53 O
ATOM 13 C1' A A2419 5.496 -59.194 33.611 1.00 57.13 C
ATOM 14 N9 A A2419 5.534 -60.115 32.483 1.00 57.70 N
ATOM 15 C8 A A2419 5.528 -61.473 32.517 1.00 58.13 C
ATOM 16 N7 A A2419 5.572 -62.006 31.317 1.00 58.61 N
ATOM 17 C5 A A2419 5.594 -60.923 30.460 1.00 58.47 C
ATOM 18 C6 A A2419 5.626 -60.822 29.066 1.00 58.81 C
ATOM 19 N6 A A2419 5.630 -61.855 28.219 1.00 59.39 N
ATOM 20 N1 A A2419 5.657 -59.578 28.556 1.00 58.55 N
ATOM 21 C2 A A2419 5.654 -58.530 29.395 1.00 57.99 C
ATOM 22 N3 A A2419 5.617 -58.499 30.724 1.00 57.63 N
ATOM 23 C4 A A2419 5.584 -59.749 31.185 1.00 57.90 C
ATOM 24 P U A2420 0.770 -58.796 34.779 1.00 58.31 P
ATOM 25 OP1 U A2420 -0.037 -57.728 35.453 1.00 57.98 O
ATOM 26 OP2 U A2420 0.461 -60.224 35.084 1.00 58.75 O
ATOM 27 O5' U A2420 0.781 -58.580 33.191 1.00 58.63 O
TER
ATOM 1 O3' G B2442 7.931 -54.247 32.896 1.00 54.73 O
ATOM 2 P A B2443 6.907 -54.697 34.020 1.00 55.72 P
ATOM 3 OP1 A B2443 5.661 -55.120 33.301 1.00 56.23 O
ATOM 4 OP2 A B2443 6.825 -53.597 35.022 1.00 55.18 O
ATOM 5 O5' A B2443 7.618 -55.972 34.671 1.00 55.82 O
ATOM 6 C5' A B2443 7.851 -56.047 36.070 1.00 55.47 C
ATOM 7 C4' A B2443 7.476 -57.394 36.620 1.00 55.81 C
ATOM 8 O4' A B2443 8.206 -58.438 35.946 1.00 56.17 O
ATOM 9 C3' A B2443 7.782 -57.620 38.074 1.00 55.51 C
ATOM 10 O3' A B2443 6.803 -57.058 38.898 1.00 55.33 O
ATOM 11 C2' A B2443 7.819 -59.129 38.173 1.00 55.95 C
ATOM 12 O2' A B2443 6.498 -59.631 38.307 1.00 56.30 O
ATOM 13 C1' A B2443 8.361 -59.532 36.801 1.00 56.29 C
ATOM 14 N9 A B2443 9.783 -59.899 36.834 1.00 56.18 N
ATOM 15 C8 A B2443 10.868 -59.144 36.435 1.00 55.87 C
ATOM 16 N7 A B2443 12.035 -59.734 36.567 1.00 55.85 N
ATOM 17 C5 A B2443 11.709 -60.978 37.069 1.00 56.19 C
ATOM 18 C6 A B2443 12.498 -62.081 37.412 1.00 56.37 C
ATOM 19 N6 A B2443 13.821 -62.119 37.310 1.00 56.22 N
ATOM 20 N1 A B2443 11.874 -63.182 37.870 1.00 56.73 N
ATOM 21 C2 A B2443 10.528 -63.139 37.975 1.00 56.88 C
ATOM 22 N3 A B2443 9.661 -62.162 37.701 1.00 56.75 N
ATOM 23 C4 A B2443 10.328 -61.092 37.243 1.00 56.39 C
ATOM 24 P A B2444 7.180 -56.478 40.327 1.00 50.75 P
ATOM 25 OP1 A B2444 5.922 -56.034 40.971 1.00 50.70 O
ATOM 26 OP2 A B2444 8.288 -55.483 40.121 1.00 50.32 O
ATOM 27 O5' A B2444 7.758 -57.742 41.083 1.00 50.88 O
TER
Atoms:
OP1: (2.254,-63.183,37.290)
OP2: (2.806,-64.365,35.113)
C3': (3.345,-59.255,34.587)
C1': (5.496,-59.194,33.611)
C5': (4.043,-60.971,36.383)
O4': (5.567,-59.951,34.798)
C8: (5.528,-61.473,32.517)
O2': (4.445,-57.140,34.238)
C6: (5.626,-60.822,29.066)
C5: (5.594,-60.923,30.460)
C4: (5.584,-59.749,31.185)
P: (3.204,-63.442,36.176)
C4': (4.380,-59.726,35.597)
C2': (4.184,-58.406,33.649)
C2: (5.654,-58.530,29.395)
N1: (5.657,-59.578,28.556)
N3: (5.617,-58.499,30.724)
N6: (5.630,-61.855,28.219)
N7: (5.572,-62.006,31.317)
N9: (5.534,-60.115,32.483)
O5': (3.673,-62.057,35.543)
O3': (2.299,-58.529,35.192)
OP2: (2.806,-64.365,35.113)
C3': (3.345,-59.255,34.587)
C1': (5.496,-59.194,33.611)
C5': (4.043,-60.971,36.383)
O4': (5.567,-59.951,34.798)
C8: (5.528,-61.473,32.517)
O2': (4.445,-57.140,34.238)
C6: (5.626,-60.822,29.066)
C5: (5.594,-60.923,30.460)
C4: (5.584,-59.749,31.185)
P: (3.204,-63.442,36.176)
C4': (4.380,-59.726,35.597)
C2': (4.184,-58.406,33.649)
C2: (5.654,-58.530,29.395)
N1: (5.657,-59.578,28.556)
N3: (5.617,-58.499,30.724)
N6: (5.630,-61.855,28.219)
N7: (5.572,-62.006,31.317)
N9: (5.534,-60.115,32.483)
O5': (3.673,-62.057,35.543)
O3': (2.299,-58.529,35.192)
OP1: (5.661,-55.120,33.301)
OP2: (6.825,-53.597,35.022)
C3': (7.782,-57.620,38.074)
C1': (8.361,-59.532,36.801)
C5': (7.851,-56.047,36.070)
O4': (8.206,-58.438,35.946)
C8: (10.868,-59.144,36.435)
O2': (6.498,-59.631,38.307)
C6: (12.498,-62.081,37.412)
C5: (11.709,-60.978,37.069)
C4: (10.328,-61.092,37.243)
P: (6.907,-54.697,34.020)
C4': (7.476,-57.394,36.620)
C2': (7.819,-59.129,38.173)
C2: (10.528,-63.139,37.975)
N1: (11.874,-63.182,37.870)
N3: (9.661,-62.162,37.701)
N6: (13.821,-62.119,37.310)
N7: (12.035,-59.734,36.567)
N9: (9.783,-59.899,36.834)
O5': (7.618,-55.972,34.671)
O3': (6.803,-57.058,38.898)
OP2: (6.825,-53.597,35.022)
C3': (7.782,-57.620,38.074)
C1': (8.361,-59.532,36.801)
C5': (7.851,-56.047,36.070)
O4': (8.206,-58.438,35.946)
C8: (10.868,-59.144,36.435)
O2': (6.498,-59.631,38.307)
C6: (12.498,-62.081,37.412)
C5: (11.709,-60.978,37.069)
C4: (10.328,-61.092,37.243)
P: (6.907,-54.697,34.020)
C4': (7.476,-57.394,36.620)
C2': (7.819,-59.129,38.173)
C2: (10.528,-63.139,37.975)
N1: (11.874,-63.182,37.870)
N3: (9.661,-62.162,37.701)
N6: (13.821,-62.119,37.310)
N7: (12.035,-59.734,36.567)
N9: (9.783,-59.899,36.834)
O5': (7.618,-55.972,34.671)
O3': (6.803,-57.058,38.898)
Image (generated by PyMOL):