Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDI:S6:S5
Extra
PDB:
ATOM 1 O3' A A 5 -14.832 103.892 -0.054 0.70 54.89 O
ATOM 2 P U A 6 -15.525 105.230 0.520 0.70 57.14 P
ATOM 3 OP1 U A 6 -17.012 105.033 0.440 0.70 57.56 O
ATOM 4 OP2 U A 6 -14.846 106.454 -0.123 0.70 57.25 O
ATOM 5 O5' U A 6 -15.205 105.260 2.072 0.70 55.90 O
ATOM 6 C5' U A 6 -15.698 106.376 2.834 0.70 55.17 C
ATOM 7 C4' U A 6 -16.365 105.889 4.078 0.70 54.00 C
ATOM 8 O4' U A 6 -17.305 104.809 3.771 0.70 53.05 O
ATOM 9 C3' U A 6 -15.387 105.387 5.134 0.70 54.00 C
ATOM 10 O3' U A 6 -15.735 105.928 6.394 0.70 54.29 O
ATOM 11 C2' U A 6 -15.551 103.873 5.049 0.70 53.35 C
ATOM 12 O2' U A 6 -15.253 103.226 6.270 0.70 55.94 O
ATOM 13 C1' U A 6 -17.026 103.713 4.623 0.70 51.02 C
ATOM 14 N1 U A 6 -17.302 102.480 3.889 0.00 46.54 N
ATOM 15 C2 U A 6 -18.402 101.719 4.272 0.00 44.14 C
ATOM 16 O2 U A 6 -19.145 102.029 5.186 0.00 43.16 O
ATOM 17 N3 U A 6 -18.606 100.576 3.538 0.00 42.05 N
ATOM 18 C4 U A 6 -17.842 100.115 2.484 0.00 41.19 C
ATOM 19 O4 U A 6 -18.147 99.060 1.923 0.00 40.26 O
ATOM 20 C5 U A 6 -16.732 100.948 2.149 0.00 42.00 C
ATOM 21 C6 U A 6 -16.502 102.072 2.841 0.00 44.60 C
ATOM 22 P U A 7 -14.885 107.155 7.001 0.70 55.06 P
ATOM 23 OP1 U A 7 -15.017 107.044 8.519 0.70 56.08 O
ATOM 24 OP2 U A 7 -15.301 108.448 6.298 0.70 53.39 O
ATOM 25 O5' U A 7 -13.364 106.808 6.619 0.70 53.14 O
TER
ATOM 1 O3' G B 4 -11.261 102.930 -4.973 0.70 37.16 O
ATOM 2 P A B 5 -11.647 104.401 -4.435 0.70 39.81 P
ATOM 3 OP1 A B 5 -12.756 104.978 -5.241 0.70 40.02 O
ATOM 4 OP2 A B 5 -10.370 105.199 -4.268 0.70 41.75 O
ATOM 5 O5' A B 5 -12.204 104.161 -2.959 0.70 41.85 O
ATOM 6 C5' A B 5 -13.123 103.081 -2.686 0.70 46.12 C
ATOM 7 C4' A B 5 -13.103 102.718 -1.215 0.70 48.68 C
ATOM 8 O4' A B 5 -11.774 102.266 -0.824 0.70 49.11 O
ATOM 9 C3' A B 5 -13.425 103.857 -0.264 0.70 50.52 C
ATOM 10 O3' A B 5 -14.832 103.892 -0.054 0.70 54.89 O
ATOM 11 C2' A B 5 -12.745 103.434 1.040 0.70 48.89 C
ATOM 12 O2' A B 5 -13.577 102.603 1.843 0.70 48.78 O
ATOM 13 C1' A B 5 -11.540 102.623 0.532 0.70 48.14 C
ATOM 14 N9 A B 5 -10.264 103.348 0.629 0.70 46.18 N
ATOM 15 C8 A B 5 -9.444 103.796 -0.358 0.70 45.46 C
ATOM 16 N7 A B 5 -8.378 104.425 0.101 0.70 45.55 N
ATOM 17 C5 A B 5 -8.529 104.378 1.473 0.70 45.64 C
ATOM 18 C6 A B 5 -7.738 104.864 2.560 0.70 45.82 C
ATOM 19 N6 A B 5 -6.585 105.554 2.381 0.70 46.02 N
ATOM 20 N1 A B 5 -8.176 104.639 3.817 0.70 45.93 N
ATOM 21 C2 A B 5 -9.309 103.962 3.990 0.70 45.76 C
ATOM 22 N3 A B 5 -10.144 103.457 3.061 0.70 45.66 N
ATOM 23 C4 A B 5 -9.694 103.703 1.826 0.70 45.57 C
ATOM 24 P U B 6 -15.525 105.230 0.520 0.70 57.14 P
ATOM 25 OP1 U B 6 -17.012 105.033 0.440 0.70 57.56 O
ATOM 26 OP2 U B 6 -14.846 106.454 -0.123 0.70 57.25 O
ATOM 27 O5' U B 6 -15.205 105.260 2.072 0.70 55.90 O
TER
ATOM 2 P U A 6 -15.525 105.230 0.520 0.70 57.14 P
ATOM 3 OP1 U A 6 -17.012 105.033 0.440 0.70 57.56 O
ATOM 4 OP2 U A 6 -14.846 106.454 -0.123 0.70 57.25 O
ATOM 5 O5' U A 6 -15.205 105.260 2.072 0.70 55.90 O
ATOM 6 C5' U A 6 -15.698 106.376 2.834 0.70 55.17 C
ATOM 7 C4' U A 6 -16.365 105.889 4.078 0.70 54.00 C
ATOM 8 O4' U A 6 -17.305 104.809 3.771 0.70 53.05 O
ATOM 9 C3' U A 6 -15.387 105.387 5.134 0.70 54.00 C
ATOM 10 O3' U A 6 -15.735 105.928 6.394 0.70 54.29 O
ATOM 11 C2' U A 6 -15.551 103.873 5.049 0.70 53.35 C
ATOM 12 O2' U A 6 -15.253 103.226 6.270 0.70 55.94 O
ATOM 13 C1' U A 6 -17.026 103.713 4.623 0.70 51.02 C
ATOM 14 N1 U A 6 -17.302 102.480 3.889 0.00 46.54 N
ATOM 15 C2 U A 6 -18.402 101.719 4.272 0.00 44.14 C
ATOM 16 O2 U A 6 -19.145 102.029 5.186 0.00 43.16 O
ATOM 17 N3 U A 6 -18.606 100.576 3.538 0.00 42.05 N
ATOM 18 C4 U A 6 -17.842 100.115 2.484 0.00 41.19 C
ATOM 19 O4 U A 6 -18.147 99.060 1.923 0.00 40.26 O
ATOM 20 C5 U A 6 -16.732 100.948 2.149 0.00 42.00 C
ATOM 21 C6 U A 6 -16.502 102.072 2.841 0.00 44.60 C
ATOM 22 P U A 7 -14.885 107.155 7.001 0.70 55.06 P
ATOM 23 OP1 U A 7 -15.017 107.044 8.519 0.70 56.08 O
ATOM 24 OP2 U A 7 -15.301 108.448 6.298 0.70 53.39 O
ATOM 25 O5' U A 7 -13.364 106.808 6.619 0.70 53.14 O
TER
ATOM 1 O3' G B 4 -11.261 102.930 -4.973 0.70 37.16 O
ATOM 2 P A B 5 -11.647 104.401 -4.435 0.70 39.81 P
ATOM 3 OP1 A B 5 -12.756 104.978 -5.241 0.70 40.02 O
ATOM 4 OP2 A B 5 -10.370 105.199 -4.268 0.70 41.75 O
ATOM 5 O5' A B 5 -12.204 104.161 -2.959 0.70 41.85 O
ATOM 6 C5' A B 5 -13.123 103.081 -2.686 0.70 46.12 C
ATOM 7 C4' A B 5 -13.103 102.718 -1.215 0.70 48.68 C
ATOM 8 O4' A B 5 -11.774 102.266 -0.824 0.70 49.11 O
ATOM 9 C3' A B 5 -13.425 103.857 -0.264 0.70 50.52 C
ATOM 10 O3' A B 5 -14.832 103.892 -0.054 0.70 54.89 O
ATOM 11 C2' A B 5 -12.745 103.434 1.040 0.70 48.89 C
ATOM 12 O2' A B 5 -13.577 102.603 1.843 0.70 48.78 O
ATOM 13 C1' A B 5 -11.540 102.623 0.532 0.70 48.14 C
ATOM 14 N9 A B 5 -10.264 103.348 0.629 0.70 46.18 N
ATOM 15 C8 A B 5 -9.444 103.796 -0.358 0.70 45.46 C
ATOM 16 N7 A B 5 -8.378 104.425 0.101 0.70 45.55 N
ATOM 17 C5 A B 5 -8.529 104.378 1.473 0.70 45.64 C
ATOM 18 C6 A B 5 -7.738 104.864 2.560 0.70 45.82 C
ATOM 19 N6 A B 5 -6.585 105.554 2.381 0.70 46.02 N
ATOM 20 N1 A B 5 -8.176 104.639 3.817 0.70 45.93 N
ATOM 21 C2 A B 5 -9.309 103.962 3.990 0.70 45.76 C
ATOM 22 N3 A B 5 -10.144 103.457 3.061 0.70 45.66 N
ATOM 23 C4 A B 5 -9.694 103.703 1.826 0.70 45.57 C
ATOM 24 P U B 6 -15.525 105.230 0.520 0.70 57.14 P
ATOM 25 OP1 U B 6 -17.012 105.033 0.440 0.70 57.56 O
ATOM 26 OP2 U B 6 -14.846 106.454 -0.123 0.70 57.25 O
ATOM 27 O5' U B 6 -15.205 105.260 2.072 0.70 55.90 O
TER
Atoms:
C4: (-17.842,100.115,2.484)
N3: (-18.606,100.576,3.538)
OP1: (-17.012,105.033,0.440)
OP2: (-14.846,106.454,-0.123)
C2: (-18.402,101.719,4.272)
C1': (-17.026,103.713,4.623)
C3': (-15.387,105.387,5.134)
O5': (-15.205,105.260,2.072)
O4': (-17.305,104.809,3.771)
C5': (-15.698,106.376,2.834)
P: (-15.525,105.230,0.520)
C4': (-16.365,105.889,4.078)
C2': (-15.551,103.873,5.049)
O2': (-15.253,103.226,6.270)
N1: (-17.302,102.480,3.889)
O4: (-18.147,99.060,1.923)
O2: (-19.145,102.029,5.186)
C6: (-16.502,102.072,2.841)
C5: (-16.732,100.948,2.149)
O3': (-15.735,105.928,6.394)
N3: (-18.606,100.576,3.538)
OP1: (-17.012,105.033,0.440)
OP2: (-14.846,106.454,-0.123)
C2: (-18.402,101.719,4.272)
C1': (-17.026,103.713,4.623)
C3': (-15.387,105.387,5.134)
O5': (-15.205,105.260,2.072)
O4': (-17.305,104.809,3.771)
C5': (-15.698,106.376,2.834)
P: (-15.525,105.230,0.520)
C4': (-16.365,105.889,4.078)
C2': (-15.551,103.873,5.049)
O2': (-15.253,103.226,6.270)
N1: (-17.302,102.480,3.889)
O4: (-18.147,99.060,1.923)
O2: (-19.145,102.029,5.186)
C6: (-16.502,102.072,2.841)
C5: (-16.732,100.948,2.149)
O3': (-15.735,105.928,6.394)
OP1: (-12.756,104.978,-5.241)
OP2: (-10.370,105.199,-4.268)
C3': (-13.425,103.857,-0.264)
C1': (-11.540,102.623,0.532)
C5': (-13.123,103.081,-2.686)
O4': (-11.774,102.266,-0.824)
C8: (-9.444,103.796,-0.358)
O2': (-13.577,102.603,1.843)
C6: (-7.738,104.864,2.560)
C5: (-8.529,104.378,1.473)
C4: (-9.694,103.703,1.826)
P: (-11.647,104.401,-4.435)
C4': (-13.103,102.718,-1.215)
C2': (-12.745,103.434,1.040)
C2: (-9.309,103.962,3.990)
N1: (-8.176,104.639,3.817)
N3: (-10.144,103.457,3.061)
N6: (-6.585,105.554,2.381)
N7: (-8.378,104.425,0.101)
N9: (-10.264,103.348,0.629)
O5': (-12.204,104.161,-2.959)
O3': (-14.832,103.892,-0.054)
OP2: (-10.370,105.199,-4.268)
C3': (-13.425,103.857,-0.264)
C1': (-11.540,102.623,0.532)
C5': (-13.123,103.081,-2.686)
O4': (-11.774,102.266,-0.824)
C8: (-9.444,103.796,-0.358)
O2': (-13.577,102.603,1.843)
C6: (-7.738,104.864,2.560)
C5: (-8.529,104.378,1.473)
C4: (-9.694,103.703,1.826)
P: (-11.647,104.401,-4.435)
C4': (-13.103,102.718,-1.215)
C2': (-12.745,103.434,1.040)
C2: (-9.309,103.962,3.990)
N1: (-8.176,104.639,3.817)
N3: (-10.144,103.457,3.061)
N6: (-6.585,105.554,2.381)
N7: (-8.378,104.425,0.101)
N9: (-10.264,103.348,0.629)
O5': (-12.204,104.161,-2.959)
O3': (-14.832,103.892,-0.054)
Image (generated by PyMOL):