Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDJ:S3:S2
Extra
PDB:
ATOM 1 O3' A A 2 -14.556 104.564 -0.268 0.60 62.76 O
ATOM 2 P U A 3 -14.973 106.092 -0.088 0.60 63.83 P
ATOM 3 OP1 U A 3 -16.318 106.250 -0.670 0.60 62.80 O
ATOM 4 OP2 U A 3 -13.871 106.983 -0.591 0.60 61.44 O
ATOM 5 O5' U A 3 -15.027 106.272 1.492 0.60 65.41 O
ATOM 6 C5' U A 3 -15.923 107.215 2.091 0.60 69.35 C
ATOM 7 C4' U A 3 -16.419 106.640 3.380 0.60 71.82 C
ATOM 8 O4' U A 3 -17.230 105.476 3.060 0.60 74.34 O
ATOM 9 C3' U A 3 -15.305 106.136 4.292 0.60 73.77 C
ATOM 10 O3' U A 3 -15.713 106.292 5.637 0.60 74.30 O
ATOM 11 C2' U A 3 -15.224 104.653 3.947 0.60 75.23 C
ATOM 12 O2' U A 3 -14.724 103.845 4.991 0.60 75.26 O
ATOM 13 C1' U A 3 -16.691 104.332 3.690 0.60 77.64 C
ATOM 14 N1 U A 3 -16.943 103.167 2.837 0.60 83.08 N
ATOM 15 C2 U A 3 -17.843 102.210 3.317 0.60 85.52 C
ATOM 16 O2 U A 3 -18.393 102.305 4.401 0.60 86.59 O
ATOM 17 N3 U A 3 -18.067 101.146 2.480 0.60 88.25 N
ATOM 18 C4 U A 3 -17.482 100.926 1.239 0.60 88.92 C
ATOM 19 O4 U A 3 -17.773 99.915 0.588 0.60 90.17 O
ATOM 20 C5 U A 3 -16.561 101.954 0.817 0.60 87.09 C
ATOM 21 C6 U A 3 -16.330 103.016 1.609 0.60 84.36 C
ATOM 22 P C A 4 -14.881 107.257 6.624 0.60 75.81 P
ATOM 23 OP1 C A 4 -15.197 106.781 8.010 0.60 77.26 O
ATOM 24 OP2 C A 4 -15.210 108.665 6.261 0.60 73.56 O
ATOM 25 O5' C A 4 -13.337 106.947 6.322 0.60 72.94 O
TER
ATOM 1 O3' G B 1 -10.997 103.145 -4.923 0.60 66.15 O
ATOM 2 P A B 2 -11.279 104.598 -4.267 0.60 63.76 P
ATOM 3 OP1 A B 2 -12.291 105.340 -5.039 0.60 61.12 O
ATOM 4 OP2 A B 2 -9.932 105.237 -4.054 0.60 63.58 O
ATOM 5 O5' A B 2 -11.853 104.296 -2.810 0.60 63.79 O
ATOM 6 C5' A B 2 -12.829 103.253 -2.605 0.60 63.51 C
ATOM 7 C4' A B 2 -12.985 102.970 -1.130 0.60 62.33 C
ATOM 8 O4' A B 2 -11.772 102.361 -0.600 0.60 60.99 O
ATOM 9 C3' A B 2 -13.192 104.214 -0.280 0.60 62.47 C
ATOM 10 O3' A B 2 -14.556 104.564 -0.268 0.60 62.76 O
ATOM 11 C2' A B 2 -12.658 103.815 1.101 0.60 61.17 C
ATOM 12 O2' A B 2 -13.624 103.199 1.949 0.60 60.06 O
ATOM 13 C1' A B 2 -11.549 102.818 0.730 0.60 59.80 C
ATOM 14 N9 A B 2 -10.219 103.427 0.797 0.60 56.99 N
ATOM 15 C8 A B 2 -9.402 103.869 -0.225 0.60 56.58 C
ATOM 16 N7 A B 2 -8.270 104.400 0.193 0.60 56.05 N
ATOM 17 C5 A B 2 -8.349 104.293 1.579 0.60 54.63 C
ATOM 18 C6 A B 2 -7.473 104.676 2.618 0.60 52.75 C
ATOM 19 N6 A B 2 -6.299 105.290 2.423 0.60 52.11 N
ATOM 20 N1 A B 2 -7.857 104.417 3.886 0.60 52.81 N
ATOM 21 C2 A B 2 -9.039 103.821 4.097 0.60 53.02 C
ATOM 22 N3 A B 2 -9.948 103.422 3.214 0.60 53.62 N
ATOM 23 C4 A B 2 -9.538 103.690 1.961 0.60 55.54 C
ATOM 24 P U B 3 -14.973 106.092 -0.088 0.60 63.83 P
ATOM 25 OP1 U B 3 -16.318 106.250 -0.670 0.60 62.80 O
ATOM 26 OP2 U B 3 -13.871 106.983 -0.591 0.60 61.44 O
ATOM 27 O5' U B 3 -15.027 106.272 1.492 0.60 65.41 O
TER
ATOM 2 P U A 3 -14.973 106.092 -0.088 0.60 63.83 P
ATOM 3 OP1 U A 3 -16.318 106.250 -0.670 0.60 62.80 O
ATOM 4 OP2 U A 3 -13.871 106.983 -0.591 0.60 61.44 O
ATOM 5 O5' U A 3 -15.027 106.272 1.492 0.60 65.41 O
ATOM 6 C5' U A 3 -15.923 107.215 2.091 0.60 69.35 C
ATOM 7 C4' U A 3 -16.419 106.640 3.380 0.60 71.82 C
ATOM 8 O4' U A 3 -17.230 105.476 3.060 0.60 74.34 O
ATOM 9 C3' U A 3 -15.305 106.136 4.292 0.60 73.77 C
ATOM 10 O3' U A 3 -15.713 106.292 5.637 0.60 74.30 O
ATOM 11 C2' U A 3 -15.224 104.653 3.947 0.60 75.23 C
ATOM 12 O2' U A 3 -14.724 103.845 4.991 0.60 75.26 O
ATOM 13 C1' U A 3 -16.691 104.332 3.690 0.60 77.64 C
ATOM 14 N1 U A 3 -16.943 103.167 2.837 0.60 83.08 N
ATOM 15 C2 U A 3 -17.843 102.210 3.317 0.60 85.52 C
ATOM 16 O2 U A 3 -18.393 102.305 4.401 0.60 86.59 O
ATOM 17 N3 U A 3 -18.067 101.146 2.480 0.60 88.25 N
ATOM 18 C4 U A 3 -17.482 100.926 1.239 0.60 88.92 C
ATOM 19 O4 U A 3 -17.773 99.915 0.588 0.60 90.17 O
ATOM 20 C5 U A 3 -16.561 101.954 0.817 0.60 87.09 C
ATOM 21 C6 U A 3 -16.330 103.016 1.609 0.60 84.36 C
ATOM 22 P C A 4 -14.881 107.257 6.624 0.60 75.81 P
ATOM 23 OP1 C A 4 -15.197 106.781 8.010 0.60 77.26 O
ATOM 24 OP2 C A 4 -15.210 108.665 6.261 0.60 73.56 O
ATOM 25 O5' C A 4 -13.337 106.947 6.322 0.60 72.94 O
TER
ATOM 1 O3' G B 1 -10.997 103.145 -4.923 0.60 66.15 O
ATOM 2 P A B 2 -11.279 104.598 -4.267 0.60 63.76 P
ATOM 3 OP1 A B 2 -12.291 105.340 -5.039 0.60 61.12 O
ATOM 4 OP2 A B 2 -9.932 105.237 -4.054 0.60 63.58 O
ATOM 5 O5' A B 2 -11.853 104.296 -2.810 0.60 63.79 O
ATOM 6 C5' A B 2 -12.829 103.253 -2.605 0.60 63.51 C
ATOM 7 C4' A B 2 -12.985 102.970 -1.130 0.60 62.33 C
ATOM 8 O4' A B 2 -11.772 102.361 -0.600 0.60 60.99 O
ATOM 9 C3' A B 2 -13.192 104.214 -0.280 0.60 62.47 C
ATOM 10 O3' A B 2 -14.556 104.564 -0.268 0.60 62.76 O
ATOM 11 C2' A B 2 -12.658 103.815 1.101 0.60 61.17 C
ATOM 12 O2' A B 2 -13.624 103.199 1.949 0.60 60.06 O
ATOM 13 C1' A B 2 -11.549 102.818 0.730 0.60 59.80 C
ATOM 14 N9 A B 2 -10.219 103.427 0.797 0.60 56.99 N
ATOM 15 C8 A B 2 -9.402 103.869 -0.225 0.60 56.58 C
ATOM 16 N7 A B 2 -8.270 104.400 0.193 0.60 56.05 N
ATOM 17 C5 A B 2 -8.349 104.293 1.579 0.60 54.63 C
ATOM 18 C6 A B 2 -7.473 104.676 2.618 0.60 52.75 C
ATOM 19 N6 A B 2 -6.299 105.290 2.423 0.60 52.11 N
ATOM 20 N1 A B 2 -7.857 104.417 3.886 0.60 52.81 N
ATOM 21 C2 A B 2 -9.039 103.821 4.097 0.60 53.02 C
ATOM 22 N3 A B 2 -9.948 103.422 3.214 0.60 53.62 N
ATOM 23 C4 A B 2 -9.538 103.690 1.961 0.60 55.54 C
ATOM 24 P U B 3 -14.973 106.092 -0.088 0.60 63.83 P
ATOM 25 OP1 U B 3 -16.318 106.250 -0.670 0.60 62.80 O
ATOM 26 OP2 U B 3 -13.871 106.983 -0.591 0.60 61.44 O
ATOM 27 O5' U B 3 -15.027 106.272 1.492 0.60 65.41 O
TER
Atoms:
C4: (-17.482,100.926,1.239)
N3: (-18.067,101.146,2.480)
OP1: (-16.318,106.250,-0.670)
OP2: (-13.871,106.983,-0.591)
C2: (-17.843,102.210,3.317)
C1': (-16.691,104.332,3.690)
C3': (-15.305,106.136,4.292)
O5': (-15.027,106.272,1.492)
O4': (-17.230,105.476,3.060)
C5': (-15.923,107.215,2.091)
P: (-14.973,106.092,-0.088)
C4': (-16.419,106.640,3.380)
C2': (-15.224,104.653,3.947)
O2': (-14.724,103.845,4.991)
N1: (-16.943,103.167,2.837)
O4: (-17.773,99.915,0.588)
O2: (-18.393,102.305,4.401)
C6: (-16.330,103.016,1.609)
C5: (-16.561,101.954,0.817)
O3': (-15.713,106.292,5.637)
N3: (-18.067,101.146,2.480)
OP1: (-16.318,106.250,-0.670)
OP2: (-13.871,106.983,-0.591)
C2: (-17.843,102.210,3.317)
C1': (-16.691,104.332,3.690)
C3': (-15.305,106.136,4.292)
O5': (-15.027,106.272,1.492)
O4': (-17.230,105.476,3.060)
C5': (-15.923,107.215,2.091)
P: (-14.973,106.092,-0.088)
C4': (-16.419,106.640,3.380)
C2': (-15.224,104.653,3.947)
O2': (-14.724,103.845,4.991)
N1: (-16.943,103.167,2.837)
O4: (-17.773,99.915,0.588)
O2: (-18.393,102.305,4.401)
C6: (-16.330,103.016,1.609)
C5: (-16.561,101.954,0.817)
O3': (-15.713,106.292,5.637)
OP1: (-12.291,105.340,-5.039)
OP2: (-9.932,105.237,-4.054)
C3': (-13.192,104.214,-0.280)
C1': (-11.549,102.818,0.730)
C5': (-12.829,103.253,-2.605)
O4': (-11.772,102.361,-0.600)
C8: (-9.402,103.869,-0.225)
O2': (-13.624,103.199,1.949)
C6: (-7.473,104.676,2.618)
C5: (-8.349,104.293,1.579)
C4: (-9.538,103.690,1.961)
P: (-11.279,104.598,-4.267)
C4': (-12.985,102.970,-1.130)
C2': (-12.658,103.815,1.101)
C2: (-9.039,103.821,4.097)
N1: (-7.857,104.417,3.886)
N3: (-9.948,103.422,3.214)
N6: (-6.299,105.290,2.423)
N7: (-8.270,104.400,0.193)
N9: (-10.219,103.427,0.797)
O5': (-11.853,104.296,-2.810)
O3': (-14.556,104.564,-0.268)
OP2: (-9.932,105.237,-4.054)
C3': (-13.192,104.214,-0.280)
C1': (-11.549,102.818,0.730)
C5': (-12.829,103.253,-2.605)
O4': (-11.772,102.361,-0.600)
C8: (-9.402,103.869,-0.225)
O2': (-13.624,103.199,1.949)
C6: (-7.473,104.676,2.618)
C5: (-8.349,104.293,1.579)
C4: (-9.538,103.690,1.961)
P: (-11.279,104.598,-4.267)
C4': (-12.985,102.970,-1.130)
C2': (-12.658,103.815,1.101)
C2: (-9.039,103.821,4.097)
N1: (-7.857,104.417,3.886)
N3: (-9.948,103.422,3.214)
N6: (-6.299,105.290,2.423)
N7: (-8.270,104.400,0.193)
N9: (-10.219,103.427,0.797)
O5': (-11.853,104.296,-2.810)
O3': (-14.556,104.564,-0.268)
Image (generated by PyMOL):