Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12882:12662
Extra
PDB:
ATOM 1 O3' A A2881 17.071 33.921 20.419 1.00 53.56 O
ATOM 2 P A A2882 17.855 35.133 21.109 1.00 52.73 P
ATOM 3 OP1 A A2882 17.168 36.387 20.725 1.00 53.29 O
ATOM 4 OP2 A A2882 19.274 34.970 20.780 1.00 52.55 O
ATOM 5 O5' A A2882 17.632 34.845 22.623 1.00 52.26 O
ATOM 6 C5' A A2882 18.076 33.623 23.174 1.00 51.72 C
ATOM 7 C4' A A2882 18.173 33.705 24.661 1.00 51.33 C
ATOM 8 O4' A A2882 16.983 33.140 25.269 1.00 51.21 O
ATOM 9 C3' A A2882 19.325 32.960 25.285 1.00 50.80 C
ATOM 10 O3' A A2882 20.501 33.734 25.225 1.00 50.84 O
ATOM 11 C2' A A2882 18.832 32.734 26.708 1.00 50.45 C
ATOM 12 O2' A A2882 19.074 33.914 27.478 1.00 50.53 O
ATOM 13 C1' A A2882 17.305 32.577 26.511 1.00 50.70 C
ATOM 14 N9 A A2882 16.838 31.177 26.499 1.00 50.43 N
ATOM 15 C8 A A2882 15.551 30.840 26.729 1.00 50.50 C
ATOM 16 N7 A A2882 15.270 29.582 26.628 1.00 50.27 N
ATOM 17 C5 A A2882 16.447 29.029 26.278 1.00 50.03 C
ATOM 18 C6 A A2882 16.773 27.715 26.033 1.00 49.74 C
ATOM 19 N6 A A2882 15.946 26.691 26.082 1.00 49.64 N
ATOM 20 N1 A A2882 18.010 27.457 25.699 1.00 49.57 N
ATOM 21 C2 A A2882 18.862 28.470 25.619 1.00 49.69 C
ATOM 22 N3 A A2882 18.699 29.772 25.834 1.00 49.97 N
ATOM 23 C4 A A2882 17.421 29.991 26.167 1.00 50.13 C
ATOM 24 P U A2883 21.889 33.217 25.844 1.00 50.13 P
ATOM 25 OP1 U A2883 21.729 33.131 27.287 1.00 49.78 O
ATOM 26 OP2 U A2883 22.928 34.101 25.316 1.00 50.35 O
ATOM 27 O5' U A2883 22.034 31.767 25.230 1.00 49.90 O
TER
ATOM 1 O3' U B2661 21.793 20.995 20.143 1.00 44.52 O
ATOM 2 P A B2662 22.447 20.966 21.593 1.00 48.96 P
ATOM 3 OP1 A B2662 23.923 21.124 21.425 1.00 48.84 O
ATOM 4 OP2 A B2662 21.933 19.769 22.301 1.00 48.62 O
ATOM 5 O5' A B2662 21.838 22.272 22.206 1.00 49.11 O
ATOM 6 C5' A B2662 22.047 22.585 23.530 1.00 48.78 C
ATOM 7 C4' A B2662 21.120 23.640 23.983 1.00 48.99 C
ATOM 8 O4' A B2662 19.822 23.486 23.365 1.00 49.31 O
ATOM 9 C3' A B2662 20.835 23.570 25.435 1.00 48.63 C
ATOM 10 O3' A B2662 21.884 24.124 26.164 1.00 48.41 O
ATOM 11 C2' A B2662 19.546 24.329 25.553 1.00 48.94 C
ATOM 12 O2' A B2662 19.812 25.710 25.447 1.00 49.21 O
ATOM 13 C1' A B2662 18.828 23.863 24.287 1.00 49.29 C
ATOM 14 N9 A B2662 17.964 22.699 24.551 1.00 49.12 N
ATOM 15 C8 A B2662 18.118 21.383 24.201 1.00 48.94 C
ATOM 16 N7 A B2662 17.162 20.578 24.604 1.00 48.84 N
ATOM 17 C5 A B2662 16.291 21.431 25.271 1.00 48.96 C
ATOM 18 C6 A B2662 15.039 21.246 25.916 1.00 48.96 C
ATOM 19 N6 A B2662 14.409 20.083 26.065 1.00 48.81 N
ATOM 20 N1 A B2662 14.444 22.312 26.469 1.00 49.11 N
ATOM 21 C2 A B2662 15.031 23.501 26.371 1.00 49.27 C
ATOM 22 N3 A B2662 16.181 23.830 25.782 1.00 49.30 N
ATOM 23 C4 A B2662 16.781 22.735 25.246 1.00 49.13 C
ATOM 24 P A B2663 22.673 23.223 27.198 1.00 49.35 P
ATOM 25 OP1 A B2663 23.961 23.902 27.430 1.00 49.26 O
ATOM 26 OP2 A B2663 22.662 21.817 26.696 1.00 49.21 O
ATOM 27 O5' A B2663 21.753 23.344 28.458 1.00 49.19 O
TER
ATOM 2 P A A2882 17.855 35.133 21.109 1.00 52.73 P
ATOM 3 OP1 A A2882 17.168 36.387 20.725 1.00 53.29 O
ATOM 4 OP2 A A2882 19.274 34.970 20.780 1.00 52.55 O
ATOM 5 O5' A A2882 17.632 34.845 22.623 1.00 52.26 O
ATOM 6 C5' A A2882 18.076 33.623 23.174 1.00 51.72 C
ATOM 7 C4' A A2882 18.173 33.705 24.661 1.00 51.33 C
ATOM 8 O4' A A2882 16.983 33.140 25.269 1.00 51.21 O
ATOM 9 C3' A A2882 19.325 32.960 25.285 1.00 50.80 C
ATOM 10 O3' A A2882 20.501 33.734 25.225 1.00 50.84 O
ATOM 11 C2' A A2882 18.832 32.734 26.708 1.00 50.45 C
ATOM 12 O2' A A2882 19.074 33.914 27.478 1.00 50.53 O
ATOM 13 C1' A A2882 17.305 32.577 26.511 1.00 50.70 C
ATOM 14 N9 A A2882 16.838 31.177 26.499 1.00 50.43 N
ATOM 15 C8 A A2882 15.551 30.840 26.729 1.00 50.50 C
ATOM 16 N7 A A2882 15.270 29.582 26.628 1.00 50.27 N
ATOM 17 C5 A A2882 16.447 29.029 26.278 1.00 50.03 C
ATOM 18 C6 A A2882 16.773 27.715 26.033 1.00 49.74 C
ATOM 19 N6 A A2882 15.946 26.691 26.082 1.00 49.64 N
ATOM 20 N1 A A2882 18.010 27.457 25.699 1.00 49.57 N
ATOM 21 C2 A A2882 18.862 28.470 25.619 1.00 49.69 C
ATOM 22 N3 A A2882 18.699 29.772 25.834 1.00 49.97 N
ATOM 23 C4 A A2882 17.421 29.991 26.167 1.00 50.13 C
ATOM 24 P U A2883 21.889 33.217 25.844 1.00 50.13 P
ATOM 25 OP1 U A2883 21.729 33.131 27.287 1.00 49.78 O
ATOM 26 OP2 U A2883 22.928 34.101 25.316 1.00 50.35 O
ATOM 27 O5' U A2883 22.034 31.767 25.230 1.00 49.90 O
TER
ATOM 1 O3' U B2661 21.793 20.995 20.143 1.00 44.52 O
ATOM 2 P A B2662 22.447 20.966 21.593 1.00 48.96 P
ATOM 3 OP1 A B2662 23.923 21.124 21.425 1.00 48.84 O
ATOM 4 OP2 A B2662 21.933 19.769 22.301 1.00 48.62 O
ATOM 5 O5' A B2662 21.838 22.272 22.206 1.00 49.11 O
ATOM 6 C5' A B2662 22.047 22.585 23.530 1.00 48.78 C
ATOM 7 C4' A B2662 21.120 23.640 23.983 1.00 48.99 C
ATOM 8 O4' A B2662 19.822 23.486 23.365 1.00 49.31 O
ATOM 9 C3' A B2662 20.835 23.570 25.435 1.00 48.63 C
ATOM 10 O3' A B2662 21.884 24.124 26.164 1.00 48.41 O
ATOM 11 C2' A B2662 19.546 24.329 25.553 1.00 48.94 C
ATOM 12 O2' A B2662 19.812 25.710 25.447 1.00 49.21 O
ATOM 13 C1' A B2662 18.828 23.863 24.287 1.00 49.29 C
ATOM 14 N9 A B2662 17.964 22.699 24.551 1.00 49.12 N
ATOM 15 C8 A B2662 18.118 21.383 24.201 1.00 48.94 C
ATOM 16 N7 A B2662 17.162 20.578 24.604 1.00 48.84 N
ATOM 17 C5 A B2662 16.291 21.431 25.271 1.00 48.96 C
ATOM 18 C6 A B2662 15.039 21.246 25.916 1.00 48.96 C
ATOM 19 N6 A B2662 14.409 20.083 26.065 1.00 48.81 N
ATOM 20 N1 A B2662 14.444 22.312 26.469 1.00 49.11 N
ATOM 21 C2 A B2662 15.031 23.501 26.371 1.00 49.27 C
ATOM 22 N3 A B2662 16.181 23.830 25.782 1.00 49.30 N
ATOM 23 C4 A B2662 16.781 22.735 25.246 1.00 49.13 C
ATOM 24 P A B2663 22.673 23.223 27.198 1.00 49.35 P
ATOM 25 OP1 A B2663 23.961 23.902 27.430 1.00 49.26 O
ATOM 26 OP2 A B2663 22.662 21.817 26.696 1.00 49.21 O
ATOM 27 O5' A B2663 21.753 23.344 28.458 1.00 49.19 O
TER
Atoms:
OP1: (17.168,36.387,20.725)
OP2: (19.274,34.970,20.780)
C3': (19.325,32.960,25.285)
C1': (17.305,32.577,26.511)
C5': (18.076,33.623,23.174)
O4': (16.983,33.140,25.269)
C8: (15.551,30.840,26.729)
O2': (19.074,33.914,27.478)
C6: (16.773,27.715,26.033)
C5: (16.447,29.029,26.278)
C4: (17.421,29.991,26.167)
P: (17.855,35.133,21.109)
C4': (18.173,33.705,24.661)
C2': (18.832,32.734,26.708)
C2: (18.862,28.470,25.619)
N1: (18.010,27.457,25.699)
N3: (18.699,29.772,25.834)
N6: (15.946,26.691,26.082)
N7: (15.270,29.582,26.628)
N9: (16.838,31.177,26.499)
O5': (17.632,34.845,22.623)
O3': (20.501,33.734,25.225)
OP2: (19.274,34.970,20.780)
C3': (19.325,32.960,25.285)
C1': (17.305,32.577,26.511)
C5': (18.076,33.623,23.174)
O4': (16.983,33.140,25.269)
C8: (15.551,30.840,26.729)
O2': (19.074,33.914,27.478)
C6: (16.773,27.715,26.033)
C5: (16.447,29.029,26.278)
C4: (17.421,29.991,26.167)
P: (17.855,35.133,21.109)
C4': (18.173,33.705,24.661)
C2': (18.832,32.734,26.708)
C2: (18.862,28.470,25.619)
N1: (18.010,27.457,25.699)
N3: (18.699,29.772,25.834)
N6: (15.946,26.691,26.082)
N7: (15.270,29.582,26.628)
N9: (16.838,31.177,26.499)
O5': (17.632,34.845,22.623)
O3': (20.501,33.734,25.225)
OP1: (23.923,21.124,21.425)
OP2: (21.933,19.769,22.301)
C3': (20.835,23.570,25.435)
C1': (18.828,23.863,24.287)
C5': (22.047,22.585,23.530)
O4': (19.822,23.486,23.365)
C8: (18.118,21.383,24.201)
O2': (19.812,25.710,25.447)
C6: (15.039,21.246,25.916)
C5: (16.291,21.431,25.271)
C4: (16.781,22.735,25.246)
P: (22.447,20.966,21.593)
C4': (21.120,23.640,23.983)
C2': (19.546,24.329,25.553)
C2: (15.031,23.501,26.371)
N1: (14.444,22.312,26.469)
N3: (16.181,23.830,25.782)
N6: (14.409,20.083,26.065)
N7: (17.162,20.578,24.604)
N9: (17.964,22.699,24.551)
O5': (21.838,22.272,22.206)
O3': (21.884,24.124,26.164)
OP2: (21.933,19.769,22.301)
C3': (20.835,23.570,25.435)
C1': (18.828,23.863,24.287)
C5': (22.047,22.585,23.530)
O4': (19.822,23.486,23.365)
C8: (18.118,21.383,24.201)
O2': (19.812,25.710,25.447)
C6: (15.039,21.246,25.916)
C5: (16.291,21.431,25.271)
C4: (16.781,22.735,25.246)
P: (22.447,20.966,21.593)
C4': (21.120,23.640,23.983)
C2': (19.546,24.329,25.553)
C2: (15.031,23.501,26.371)
N1: (14.444,22.312,26.469)
N3: (16.181,23.830,25.782)
N6: (14.409,20.083,26.065)
N7: (17.162,20.578,24.604)
N9: (17.964,22.699,24.551)
O5': (21.838,22.272,22.206)
O3': (21.884,24.124,26.164)
Image (generated by PyMOL):