Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:167:1310
Extra
PDB:
ATOM 1 O3' C A 66 56.722 -52.290 109.625 1.00 47.79 O
ATOM 2 P A A 67 56.136 -53.352 108.576 1.00 46.97 P
ATOM 3 OP1 A A 67 55.784 -52.610 107.351 1.00 46.41 O
ATOM 4 OP2 A A 67 55.081 -54.108 109.277 1.00 47.25 O
ATOM 5 O5' A A 67 57.386 -54.269 108.282 1.00 47.28 O
ATOM 6 C5' A A 67 57.240 -55.642 107.928 1.00 47.55 C
ATOM 7 C4' A A 67 58.117 -56.518 108.796 1.00 48.14 C
ATOM 8 O4' A A 67 57.704 -56.407 110.169 1.00 48.44 O
ATOM 9 C3' A A 67 58.084 -58.000 108.511 1.00 48.50 C
ATOM 10 O3' A A 67 58.967 -58.349 107.465 1.00 48.44 O
ATOM 11 C2' A A 67 58.467 -58.621 109.858 1.00 49.10 C
ATOM 12 O2' A A 67 59.878 -58.677 110.010 1.00 49.34 O
ATOM 13 C1' A A 67 57.938 -57.600 110.848 1.00 49.00 C
ATOM 14 N9 A A 67 56.687 -57.991 111.492 1.00 49.15 N
ATOM 15 C8 A A 67 55.600 -57.195 111.406 1.00 48.77 C
ATOM 16 N7 A A 67 54.614 -57.647 112.121 1.00 49.00 N
ATOM 17 C5 A A 67 55.099 -58.792 112.712 1.00 49.57 C
ATOM 18 C6 A A 67 54.510 -59.701 113.570 1.00 50.03 C
ATOM 19 N6 A A 67 53.264 -59.567 113.984 1.00 49.98 N
ATOM 20 N1 A A 67 55.251 -60.734 114.006 1.00 50.57 N
ATOM 21 C2 A A 67 56.514 -60.827 113.595 1.00 50.62 C
ATOM 22 N3 A A 67 57.168 -60.034 112.774 1.00 50.20 N
ATOM 23 C4 A A 67 56.398 -59.015 112.363 1.00 49.68 C
ATOM 24 P A A 68 58.447 -59.179 106.227 1.00 51.02 P
ATOM 25 OP1 A A 68 59.515 -59.206 105.207 1.00 50.91 O
ATOM 26 OP2 A A 68 57.155 -58.601 105.873 1.00 50.61 O
ATOM 27 O5' A A 68 58.254 -60.615 106.858 1.00 51.61 O
TER
ATOM 1 O3' C B 309 52.776 -69.467 117.037 1.00 58.14 O
ATOM 2 P A B 310 53.449 -68.635 118.242 1.00 54.80 P
ATOM 3 OP1 A B 310 54.670 -69.399 118.638 1.00 55.34 O
ATOM 4 OP2 A B 310 52.408 -68.377 119.258 1.00 54.92 O
ATOM 5 O5' A B 310 53.849 -67.266 117.557 1.00 54.14 O
ATOM 6 C5' A B 310 54.671 -67.249 116.417 1.00 53.86 C
ATOM 7 C4' A B 310 54.704 -65.886 115.813 1.00 53.20 C
ATOM 8 O4' A B 310 53.388 -65.530 115.338 1.00 52.79 O
ATOM 9 C3' A B 310 55.050 -64.753 116.759 1.00 53.15 C
ATOM 10 O3' A B 310 56.434 -64.678 117.051 1.00 53.38 O
ATOM 11 C2' A B 310 54.491 -63.539 116.015 1.00 52.45 C
ATOM 12 O2' A B 310 55.339 -63.177 114.933 1.00 52.09 O
ATOM 13 C1' A B 310 53.215 -64.130 115.424 1.00 52.32 C
ATOM 14 N9 A B 310 52.008 -63.857 116.227 1.00 52.36 N
ATOM 15 C8 A B 310 51.316 -64.748 116.988 1.00 52.82 C
ATOM 16 N7 A B 310 50.227 -64.261 117.532 1.00 52.73 N
ATOM 17 C5 A B 310 50.163 -62.978 117.060 1.00 52.15 C
ATOM 18 C6 A B 310 49.226 -61.954 117.259 1.00 51.80 C
ATOM 19 N6 A B 310 48.164 -62.106 118.020 1.00 52.00 N
ATOM 20 N1 A B 310 49.423 -60.760 116.672 1.00 51.25 N
ATOM 21 C2 A B 310 50.525 -60.663 115.926 1.00 51.09 C
ATOM 22 N3 A B 310 51.489 -61.541 115.633 1.00 51.37 N
ATOM 23 C4 A B 310 51.250 -62.709 116.248 1.00 51.91 C
ATOM 24 P U B 311 56.936 -64.040 118.426 1.00 52.11 P
ATOM 25 OP1 U B 311 58.409 -63.970 118.345 1.00 52.25 O
ATOM 26 OP2 U B 311 56.301 -64.785 119.549 1.00 52.66 O
ATOM 27 O5' U B 311 56.350 -62.589 118.357 1.00 51.54 O
TER
ATOM 2 P A A 67 56.136 -53.352 108.576 1.00 46.97 P
ATOM 3 OP1 A A 67 55.784 -52.610 107.351 1.00 46.41 O
ATOM 4 OP2 A A 67 55.081 -54.108 109.277 1.00 47.25 O
ATOM 5 O5' A A 67 57.386 -54.269 108.282 1.00 47.28 O
ATOM 6 C5' A A 67 57.240 -55.642 107.928 1.00 47.55 C
ATOM 7 C4' A A 67 58.117 -56.518 108.796 1.00 48.14 C
ATOM 8 O4' A A 67 57.704 -56.407 110.169 1.00 48.44 O
ATOM 9 C3' A A 67 58.084 -58.000 108.511 1.00 48.50 C
ATOM 10 O3' A A 67 58.967 -58.349 107.465 1.00 48.44 O
ATOM 11 C2' A A 67 58.467 -58.621 109.858 1.00 49.10 C
ATOM 12 O2' A A 67 59.878 -58.677 110.010 1.00 49.34 O
ATOM 13 C1' A A 67 57.938 -57.600 110.848 1.00 49.00 C
ATOM 14 N9 A A 67 56.687 -57.991 111.492 1.00 49.15 N
ATOM 15 C8 A A 67 55.600 -57.195 111.406 1.00 48.77 C
ATOM 16 N7 A A 67 54.614 -57.647 112.121 1.00 49.00 N
ATOM 17 C5 A A 67 55.099 -58.792 112.712 1.00 49.57 C
ATOM 18 C6 A A 67 54.510 -59.701 113.570 1.00 50.03 C
ATOM 19 N6 A A 67 53.264 -59.567 113.984 1.00 49.98 N
ATOM 20 N1 A A 67 55.251 -60.734 114.006 1.00 50.57 N
ATOM 21 C2 A A 67 56.514 -60.827 113.595 1.00 50.62 C
ATOM 22 N3 A A 67 57.168 -60.034 112.774 1.00 50.20 N
ATOM 23 C4 A A 67 56.398 -59.015 112.363 1.00 49.68 C
ATOM 24 P A A 68 58.447 -59.179 106.227 1.00 51.02 P
ATOM 25 OP1 A A 68 59.515 -59.206 105.207 1.00 50.91 O
ATOM 26 OP2 A A 68 57.155 -58.601 105.873 1.00 50.61 O
ATOM 27 O5' A A 68 58.254 -60.615 106.858 1.00 51.61 O
TER
ATOM 1 O3' C B 309 52.776 -69.467 117.037 1.00 58.14 O
ATOM 2 P A B 310 53.449 -68.635 118.242 1.00 54.80 P
ATOM 3 OP1 A B 310 54.670 -69.399 118.638 1.00 55.34 O
ATOM 4 OP2 A B 310 52.408 -68.377 119.258 1.00 54.92 O
ATOM 5 O5' A B 310 53.849 -67.266 117.557 1.00 54.14 O
ATOM 6 C5' A B 310 54.671 -67.249 116.417 1.00 53.86 C
ATOM 7 C4' A B 310 54.704 -65.886 115.813 1.00 53.20 C
ATOM 8 O4' A B 310 53.388 -65.530 115.338 1.00 52.79 O
ATOM 9 C3' A B 310 55.050 -64.753 116.759 1.00 53.15 C
ATOM 10 O3' A B 310 56.434 -64.678 117.051 1.00 53.38 O
ATOM 11 C2' A B 310 54.491 -63.539 116.015 1.00 52.45 C
ATOM 12 O2' A B 310 55.339 -63.177 114.933 1.00 52.09 O
ATOM 13 C1' A B 310 53.215 -64.130 115.424 1.00 52.32 C
ATOM 14 N9 A B 310 52.008 -63.857 116.227 1.00 52.36 N
ATOM 15 C8 A B 310 51.316 -64.748 116.988 1.00 52.82 C
ATOM 16 N7 A B 310 50.227 -64.261 117.532 1.00 52.73 N
ATOM 17 C5 A B 310 50.163 -62.978 117.060 1.00 52.15 C
ATOM 18 C6 A B 310 49.226 -61.954 117.259 1.00 51.80 C
ATOM 19 N6 A B 310 48.164 -62.106 118.020 1.00 52.00 N
ATOM 20 N1 A B 310 49.423 -60.760 116.672 1.00 51.25 N
ATOM 21 C2 A B 310 50.525 -60.663 115.926 1.00 51.09 C
ATOM 22 N3 A B 310 51.489 -61.541 115.633 1.00 51.37 N
ATOM 23 C4 A B 310 51.250 -62.709 116.248 1.00 51.91 C
ATOM 24 P U B 311 56.936 -64.040 118.426 1.00 52.11 P
ATOM 25 OP1 U B 311 58.409 -63.970 118.345 1.00 52.25 O
ATOM 26 OP2 U B 311 56.301 -64.785 119.549 1.00 52.66 O
ATOM 27 O5' U B 311 56.350 -62.589 118.357 1.00 51.54 O
TER
Atoms:
OP1: (55.784,-52.610,107.351)
OP2: (55.081,-54.108,109.277)
C3': (58.084,-58.000,108.511)
C1': (57.938,-57.600,110.848)
C5': (57.240,-55.642,107.928)
O4': (57.704,-56.407,110.169)
C8: (55.600,-57.195,111.406)
O2': (59.878,-58.677,110.010)
C6: (54.510,-59.701,113.570)
C5: (55.099,-58.792,112.712)
C4: (56.398,-59.015,112.363)
P: (56.136,-53.352,108.576)
C4': (58.117,-56.518,108.796)
C2': (58.467,-58.621,109.858)
C2: (56.514,-60.827,113.595)
N1: (55.251,-60.734,114.006)
N3: (57.168,-60.034,112.774)
N6: (53.264,-59.567,113.984)
N7: (54.614,-57.647,112.121)
N9: (56.687,-57.991,111.492)
O5': (57.386,-54.269,108.282)
O3': (58.967,-58.349,107.465)
OP2: (55.081,-54.108,109.277)
C3': (58.084,-58.000,108.511)
C1': (57.938,-57.600,110.848)
C5': (57.240,-55.642,107.928)
O4': (57.704,-56.407,110.169)
C8: (55.600,-57.195,111.406)
O2': (59.878,-58.677,110.010)
C6: (54.510,-59.701,113.570)
C5: (55.099,-58.792,112.712)
C4: (56.398,-59.015,112.363)
P: (56.136,-53.352,108.576)
C4': (58.117,-56.518,108.796)
C2': (58.467,-58.621,109.858)
C2: (56.514,-60.827,113.595)
N1: (55.251,-60.734,114.006)
N3: (57.168,-60.034,112.774)
N6: (53.264,-59.567,113.984)
N7: (54.614,-57.647,112.121)
N9: (56.687,-57.991,111.492)
O5': (57.386,-54.269,108.282)
O3': (58.967,-58.349,107.465)
OP1: (54.670,-69.399,118.638)
OP2: (52.408,-68.377,119.258)
C3': (55.050,-64.753,116.759)
C1': (53.215,-64.130,115.424)
C5': (54.671,-67.249,116.417)
O4': (53.388,-65.530,115.338)
C8: (51.316,-64.748,116.988)
O2': (55.339,-63.177,114.933)
C6: (49.226,-61.954,117.259)
C5: (50.163,-62.978,117.060)
C4: (51.250,-62.709,116.248)
P: (53.449,-68.635,118.242)
C4': (54.704,-65.886,115.813)
C2': (54.491,-63.539,116.015)
C2: (50.525,-60.663,115.926)
N1: (49.423,-60.760,116.672)
N3: (51.489,-61.541,115.633)
N6: (48.164,-62.106,118.020)
N7: (50.227,-64.261,117.532)
N9: (52.008,-63.857,116.227)
O5': (53.849,-67.266,117.557)
O3': (56.434,-64.678,117.051)
OP2: (52.408,-68.377,119.258)
C3': (55.050,-64.753,116.759)
C1': (53.215,-64.130,115.424)
C5': (54.671,-67.249,116.417)
O4': (53.388,-65.530,115.338)
C8: (51.316,-64.748,116.988)
O2': (55.339,-63.177,114.933)
C6: (49.226,-61.954,117.259)
C5: (50.163,-62.978,117.060)
C4: (51.250,-62.709,116.248)
P: (53.449,-68.635,118.242)
C4': (54.704,-65.886,115.813)
C2': (54.491,-63.539,116.015)
C2: (50.525,-60.663,115.926)
N1: (49.423,-60.760,116.672)
N3: (51.489,-61.541,115.633)
N6: (48.164,-62.106,118.020)
N7: (50.227,-64.261,117.532)
N9: (52.008,-63.857,116.227)
O5': (53.849,-67.266,117.557)
O3': (56.434,-64.678,117.051)
Image (generated by PyMOL):