Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD5:B4:A5
Extra
PDB:
ATOM 1 O3' C A 3 -13.617 2.459 32.288 1.00 26.77 O
ATOM 2 P A A 4 -14.872 3.388 32.689 1.00 31.45 P
ATOM 3 OP1 A A 4 -14.959 3.471 34.179 1.00 34.77 O
ATOM 4 OP2 A A 4 -16.036 2.950 31.906 1.00 38.24 O
ATOM 5 O5' A A 4 -14.383 4.837 32.204 1.00 32.85 O
ATOM 6 C5' A A 4 -14.188 5.864 33.184 1.00 32.07 C
ATOM 7 C4' A A 4 -12.902 5.793 33.969 1.00 31.76 C
ATOM 8 O4' A A 4 -11.790 5.527 33.059 1.00 27.99 O
ATOM 9 C3' A A 4 -12.530 7.132 34.624 1.00 30.60 C
ATOM 10 O3' A A 4 -13.103 7.220 35.941 1.00 33.51 O
ATOM 11 C2' A A 4 -11.003 7.072 34.595 1.00 29.46 C
ATOM 12 O2' A A 4 -10.461 6.257 35.624 1.00 32.13 O
ATOM 13 C1' A A 4 -10.713 6.415 33.239 1.00 29.48 C
ATOM 14 N9 A A 4 -10.605 7.329 32.089 1.00 25.82 N
ATOM 15 C8 A A 4 -11.409 7.335 30.981 1.00 25.09 C
ATOM 16 N7 A A 4 -11.106 8.263 30.076 1.00 23.15 N
ATOM 17 C5 A A 4 -10.011 8.915 30.625 1.00 24.57 C
ATOM 18 C6 A A 4 -9.242 9.987 30.141 1.00 22.89 C
ATOM 19 N6 A A 4 -9.442 10.618 28.968 1.00 21.92 N
ATOM 20 N1 A A 4 -8.212 10.420 30.912 1.00 25.14 N
ATOM 21 C2 A A 4 -8.000 9.795 32.089 1.00 24.54 C
ATOM 22 N3 A A 4 -8.674 8.781 32.628 1.00 25.98 N
ATOM 23 C4 A A 4 -9.696 8.349 31.851 1.00 26.32 C
ATOM 24 P C A 5 -14.234 8.313 36.268 1.00 35.56 P
ATOM 25 OP1 C A 5 -14.653 8.216 37.700 1.00 41.39 O
ATOM 26 OP2 C A 5 -15.346 8.284 35.290 1.00 33.25 O
ATOM 27 O5' C A 5 -13.479 9.730 36.076 1.00 33.96 O
TER
ATOM 1 O3' A B 4 -15.455 9.649 20.782 1.00 31.92 O
ATOM 2 P C B 5 -14.367 8.515 20.480 1.00 35.67 P
ATOM 3 OP1 C B 5 -14.424 8.085 19.050 1.00 44.00 O
ATOM 4 OP2 C B 5 -14.421 7.398 21.464 1.00 33.81 O
ATOM 5 O5' C B 5 -12.948 9.245 20.695 1.00 34.02 O
ATOM 6 C5' C B 5 -12.628 10.496 20.089 1.00 32.38 C
ATOM 7 C4' C B 5 -11.626 11.257 20.908 1.00 31.84 C
ATOM 8 O4' C B 5 -12.176 11.621 22.197 1.00 30.65 O
ATOM 9 C3' C B 5 -10.297 10.578 21.204 1.00 32.63 C
ATOM 10 O3' C B 5 -9.405 10.885 20.104 1.00 33.79 O
ATOM 11 C2' C B 5 -9.818 11.361 22.423 1.00 28.96 C
ATOM 12 O2' C B 5 -9.298 12.597 21.945 1.00 28.84 O
ATOM 13 C1' C B 5 -11.128 11.621 23.169 1.00 26.58 C
ATOM 14 N1 C B 5 -11.482 10.664 24.218 1.00 24.94 N
ATOM 15 C2 C B 5 -10.840 10.787 25.457 1.00 25.41 C
ATOM 16 O2 C B 5 -9.985 11.692 25.598 1.00 25.36 O
ATOM 17 N3 C B 5 -11.127 9.910 26.438 1.00 25.61 N
ATOM 18 C4 C B 5 -12.057 8.968 26.242 1.00 26.50 C
ATOM 19 N4 C B 5 -12.358 8.170 27.285 1.00 25.89 N
ATOM 20 C5 C B 5 -12.684 8.783 24.967 1.00 26.53 C
ATOM 21 C6 C B 5 -12.413 9.679 23.992 1.00 23.00 C
ATOM 22 P A B 6 -8.168 9.881 19.930 1.00 36.56 P
ATOM 23 OP1 A B 6 -7.456 10.161 18.652 1.00 45.60 O
ATOM 24 OP2 A B 6 -8.493 8.470 20.299 1.00 42.13 O
ATOM 25 O5' A B 6 -7.201 10.352 21.155 1.00 36.93 O
TER
ATOM 2 P A A 4 -14.872 3.388 32.689 1.00 31.45 P
ATOM 3 OP1 A A 4 -14.959 3.471 34.179 1.00 34.77 O
ATOM 4 OP2 A A 4 -16.036 2.950 31.906 1.00 38.24 O
ATOM 5 O5' A A 4 -14.383 4.837 32.204 1.00 32.85 O
ATOM 6 C5' A A 4 -14.188 5.864 33.184 1.00 32.07 C
ATOM 7 C4' A A 4 -12.902 5.793 33.969 1.00 31.76 C
ATOM 8 O4' A A 4 -11.790 5.527 33.059 1.00 27.99 O
ATOM 9 C3' A A 4 -12.530 7.132 34.624 1.00 30.60 C
ATOM 10 O3' A A 4 -13.103 7.220 35.941 1.00 33.51 O
ATOM 11 C2' A A 4 -11.003 7.072 34.595 1.00 29.46 C
ATOM 12 O2' A A 4 -10.461 6.257 35.624 1.00 32.13 O
ATOM 13 C1' A A 4 -10.713 6.415 33.239 1.00 29.48 C
ATOM 14 N9 A A 4 -10.605 7.329 32.089 1.00 25.82 N
ATOM 15 C8 A A 4 -11.409 7.335 30.981 1.00 25.09 C
ATOM 16 N7 A A 4 -11.106 8.263 30.076 1.00 23.15 N
ATOM 17 C5 A A 4 -10.011 8.915 30.625 1.00 24.57 C
ATOM 18 C6 A A 4 -9.242 9.987 30.141 1.00 22.89 C
ATOM 19 N6 A A 4 -9.442 10.618 28.968 1.00 21.92 N
ATOM 20 N1 A A 4 -8.212 10.420 30.912 1.00 25.14 N
ATOM 21 C2 A A 4 -8.000 9.795 32.089 1.00 24.54 C
ATOM 22 N3 A A 4 -8.674 8.781 32.628 1.00 25.98 N
ATOM 23 C4 A A 4 -9.696 8.349 31.851 1.00 26.32 C
ATOM 24 P C A 5 -14.234 8.313 36.268 1.00 35.56 P
ATOM 25 OP1 C A 5 -14.653 8.216 37.700 1.00 41.39 O
ATOM 26 OP2 C A 5 -15.346 8.284 35.290 1.00 33.25 O
ATOM 27 O5' C A 5 -13.479 9.730 36.076 1.00 33.96 O
TER
ATOM 1 O3' A B 4 -15.455 9.649 20.782 1.00 31.92 O
ATOM 2 P C B 5 -14.367 8.515 20.480 1.00 35.67 P
ATOM 3 OP1 C B 5 -14.424 8.085 19.050 1.00 44.00 O
ATOM 4 OP2 C B 5 -14.421 7.398 21.464 1.00 33.81 O
ATOM 5 O5' C B 5 -12.948 9.245 20.695 1.00 34.02 O
ATOM 6 C5' C B 5 -12.628 10.496 20.089 1.00 32.38 C
ATOM 7 C4' C B 5 -11.626 11.257 20.908 1.00 31.84 C
ATOM 8 O4' C B 5 -12.176 11.621 22.197 1.00 30.65 O
ATOM 9 C3' C B 5 -10.297 10.578 21.204 1.00 32.63 C
ATOM 10 O3' C B 5 -9.405 10.885 20.104 1.00 33.79 O
ATOM 11 C2' C B 5 -9.818 11.361 22.423 1.00 28.96 C
ATOM 12 O2' C B 5 -9.298 12.597 21.945 1.00 28.84 O
ATOM 13 C1' C B 5 -11.128 11.621 23.169 1.00 26.58 C
ATOM 14 N1 C B 5 -11.482 10.664 24.218 1.00 24.94 N
ATOM 15 C2 C B 5 -10.840 10.787 25.457 1.00 25.41 C
ATOM 16 O2 C B 5 -9.985 11.692 25.598 1.00 25.36 O
ATOM 17 N3 C B 5 -11.127 9.910 26.438 1.00 25.61 N
ATOM 18 C4 C B 5 -12.057 8.968 26.242 1.00 26.50 C
ATOM 19 N4 C B 5 -12.358 8.170 27.285 1.00 25.89 N
ATOM 20 C5 C B 5 -12.684 8.783 24.967 1.00 26.53 C
ATOM 21 C6 C B 5 -12.413 9.679 23.992 1.00 23.00 C
ATOM 22 P A B 6 -8.168 9.881 19.930 1.00 36.56 P
ATOM 23 OP1 A B 6 -7.456 10.161 18.652 1.00 45.60 O
ATOM 24 OP2 A B 6 -8.493 8.470 20.299 1.00 42.13 O
ATOM 25 O5' A B 6 -7.201 10.352 21.155 1.00 36.93 O
TER
Atoms:
OP1: (-14.959,3.471,34.179)
OP2: (-16.036,2.950,31.906)
C3': (-12.530,7.132,34.624)
C1': (-10.713,6.415,33.239)
C5': (-14.188,5.864,33.184)
O4': (-11.790,5.527,33.059)
C8: (-11.409,7.335,30.981)
O2': (-10.461,6.257,35.624)
C6: (-9.242,9.987,30.141)
C5: (-10.011,8.915,30.625)
C4: (-9.696,8.349,31.851)
P: (-14.872,3.388,32.689)
C4': (-12.902,5.793,33.969)
C2': (-11.003,7.072,34.595)
C2: (-8.000,9.795,32.089)
N1: (-8.212,10.420,30.912)
N3: (-8.674,8.781,32.628)
N6: (-9.442,10.618,28.968)
N7: (-11.106,8.263,30.076)
N9: (-10.605,7.329,32.089)
O5': (-14.383,4.837,32.204)
O3': (-13.103,7.220,35.941)
OP2: (-16.036,2.950,31.906)
C3': (-12.530,7.132,34.624)
C1': (-10.713,6.415,33.239)
C5': (-14.188,5.864,33.184)
O4': (-11.790,5.527,33.059)
C8: (-11.409,7.335,30.981)
O2': (-10.461,6.257,35.624)
C6: (-9.242,9.987,30.141)
C5: (-10.011,8.915,30.625)
C4: (-9.696,8.349,31.851)
P: (-14.872,3.388,32.689)
C4': (-12.902,5.793,33.969)
C2': (-11.003,7.072,34.595)
C2: (-8.000,9.795,32.089)
N1: (-8.212,10.420,30.912)
N3: (-8.674,8.781,32.628)
N6: (-9.442,10.618,28.968)
N7: (-11.106,8.263,30.076)
N9: (-10.605,7.329,32.089)
O5': (-14.383,4.837,32.204)
O3': (-13.103,7.220,35.941)
C2: (-10.840,10.787,25.457)
OP1: (-14.424,8.085,19.050)
OP2: (-14.421,7.398,21.464)
C4: (-12.057,8.968,26.242)
O5': (-12.948,9.245,20.695)
C3': (-10.297,10.578,21.204)
C1': (-11.128,11.621,23.169)
O4': (-12.176,11.621,22.197)
C5': (-12.628,10.496,20.089)
P: (-14.367,8.515,20.480)
O2: (-9.985,11.692,25.598)
C4': (-11.626,11.257,20.908)
C2': (-9.818,11.361,22.423)
O2': (-9.298,12.597,21.945)
N1: (-11.482,10.664,24.218)
N3: (-11.127,9.910,26.438)
N4: (-12.358,8.170,27.285)
C6: (-12.413,9.679,23.992)
C5: (-12.684,8.783,24.967)
O3': (-9.405,10.885,20.104)
OP1: (-14.424,8.085,19.050)
OP2: (-14.421,7.398,21.464)
C4: (-12.057,8.968,26.242)
O5': (-12.948,9.245,20.695)
C3': (-10.297,10.578,21.204)
C1': (-11.128,11.621,23.169)
O4': (-12.176,11.621,22.197)
C5': (-12.628,10.496,20.089)
P: (-14.367,8.515,20.480)
O2: (-9.985,11.692,25.598)
C4': (-11.626,11.257,20.908)
C2': (-9.818,11.361,22.423)
O2': (-9.298,12.597,21.945)
N1: (-11.482,10.664,24.218)
N3: (-11.127,9.910,26.438)
N4: (-12.358,8.170,27.285)
C6: (-12.413,9.679,23.992)
C5: (-12.684,8.783,24.967)
O3': (-9.405,10.885,20.104)
Image (generated by PyMOL):