Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DVZ:A11:A10
Extra
PDB:
ATOM 1 O3' A A 10 1.704 46.026 -6.313 1.00 12.74 O
ATOM 2 P C A 11 2.408 44.615 -6.067 1.00 14.24 P
ATOM 3 OP1 C A 11 3.150 44.728 -4.794 1.00 17.08 O
ATOM 4 OP2 C A 11 3.122 44.228 -7.303 1.00 16.63 O
ATOM 5 O5' C A 11 1.183 43.602 -5.881 1.00 11.82 O
ATOM 6 C5' C A 11 0.351 43.665 -4.732 1.00 11.25 C
ATOM 7 C4' C A 11 -0.823 42.718 -4.901 1.00 9.96 C
ATOM 8 O4' C A 11 -1.631 43.151 -6.023 1.00 9.35 O
ATOM 9 C3' C A 11 -0.460 41.287 -5.264 1.00 9.29 C
ATOM 10 O3' C A 11 -0.075 40.558 -4.110 1.00 9.90 O
ATOM 11 C2' C A 11 -1.782 40.796 -5.848 1.00 9.20 C
ATOM 12 O2' C A 11 -2.750 40.492 -4.864 1.00 10.14 O
ATOM 13 C1' C A 11 -2.212 42.022 -6.648 1.00 9.13 C
ATOM 14 N1 C A 11 -1.747 41.925 -8.051 1.00 8.34 N
ATOM 15 C2 C A 11 -2.475 41.111 -8.917 1.00 8.58 C
ATOM 16 O2 C A 11 -3.470 40.528 -8.469 1.00 9.57 O
ATOM 17 N3 C A 11 -2.069 40.990 -10.204 1.00 9.46 N
ATOM 18 C4 C A 11 -0.986 41.646 -10.622 1.00 9.71 C
ATOM 19 N4 C A 11 -0.623 41.496 -11.900 1.00 10.58 N
ATOM 20 C5 C A 11 -0.225 42.480 -9.748 1.00 9.33 C
ATOM 21 C6 C A 11 -0.635 42.589 -8.478 1.00 9.70 C
ATOM 22 P G A 12 1.044 39.420 -4.233 1.00 10.45 P
ATOM 23 OP1 G A 12 1.240 38.870 -2.873 1.00 11.49 O
ATOM 24 OP2 G A 12 2.199 39.954 -4.990 1.00 10.63 O
ATOM 25 O5' G A 12 0.348 38.319 -5.157 1.00 10.65 O
TER
ATOM 1 O3' U B 9 2.569 47.723 -12.100 1.00 12.26 O
ATOM 2 P A B 10 2.970 46.526 -11.123 1.00 13.02 P
ATOM 3 OP1 A B 10 4.310 46.831 -10.570 1.00 16.02 O
ATOM 4 OP2 A B 10 2.738 45.255 -11.841 1.00 13.51 O
ATOM 5 O5' A B 10 1.888 46.620 -9.952 1.00 11.63 O
ATOM 6 C5' A B 10 1.955 47.677 -9.011 1.00 12.67 C
ATOM 7 C4' A B 10 0.847 47.519 -7.991 1.00 11.27 C
ATOM 8 O4' A B 10 -0.433 47.653 -8.649 1.00 10.72 O
ATOM 9 C3' A B 10 0.756 46.146 -7.348 1.00 10.72 C
ATOM 10 O3' A B 10 1.704 46.026 -6.313 1.00 12.74 O
ATOM 11 C2' A B 10 -0.661 46.190 -6.793 1.00 11.04 C
ATOM 12 O2' A B 10 -0.765 46.967 -5.616 1.00 13.74 O
ATOM 13 C1' A B 10 -1.388 46.889 -7.934 1.00 10.21 C
ATOM 14 N9 A B 10 -2.068 45.987 -8.857 1.00 9.56 N
ATOM 15 C8 A B 10 -1.756 45.724 -10.162 1.00 9.88 C
ATOM 16 N7 A B 10 -2.576 44.874 -10.737 1.00 8.93 N
ATOM 17 C5 A B 10 -3.488 44.564 -9.740 1.00 9.13 C
ATOM 18 C6 A B 10 -4.615 43.721 -9.703 1.00 9.28 C
ATOM 19 N6 A B 10 -5.032 43.001 -10.748 1.00 10.11 N
ATOM 20 N1 A B 10 -5.302 43.647 -8.544 1.00 9.30 N
ATOM 21 C2 A B 10 -4.885 44.368 -7.498 1.00 9.38 C
ATOM 22 N3 A B 10 -3.845 45.192 -7.411 1.00 9.59 N
ATOM 23 C4 A B 10 -3.186 45.245 -8.578 1.00 9.31 C
ATOM 24 P C B 11 2.408 44.615 -6.067 1.00 14.24 P
ATOM 25 OP1 C B 11 3.150 44.728 -4.794 1.00 17.08 O
ATOM 26 OP2 C B 11 3.122 44.228 -7.303 1.00 16.63 O
ATOM 27 O5' C B 11 1.183 43.602 -5.881 1.00 11.82 O
TER
ATOM 2 P C A 11 2.408 44.615 -6.067 1.00 14.24 P
ATOM 3 OP1 C A 11 3.150 44.728 -4.794 1.00 17.08 O
ATOM 4 OP2 C A 11 3.122 44.228 -7.303 1.00 16.63 O
ATOM 5 O5' C A 11 1.183 43.602 -5.881 1.00 11.82 O
ATOM 6 C5' C A 11 0.351 43.665 -4.732 1.00 11.25 C
ATOM 7 C4' C A 11 -0.823 42.718 -4.901 1.00 9.96 C
ATOM 8 O4' C A 11 -1.631 43.151 -6.023 1.00 9.35 O
ATOM 9 C3' C A 11 -0.460 41.287 -5.264 1.00 9.29 C
ATOM 10 O3' C A 11 -0.075 40.558 -4.110 1.00 9.90 O
ATOM 11 C2' C A 11 -1.782 40.796 -5.848 1.00 9.20 C
ATOM 12 O2' C A 11 -2.750 40.492 -4.864 1.00 10.14 O
ATOM 13 C1' C A 11 -2.212 42.022 -6.648 1.00 9.13 C
ATOM 14 N1 C A 11 -1.747 41.925 -8.051 1.00 8.34 N
ATOM 15 C2 C A 11 -2.475 41.111 -8.917 1.00 8.58 C
ATOM 16 O2 C A 11 -3.470 40.528 -8.469 1.00 9.57 O
ATOM 17 N3 C A 11 -2.069 40.990 -10.204 1.00 9.46 N
ATOM 18 C4 C A 11 -0.986 41.646 -10.622 1.00 9.71 C
ATOM 19 N4 C A 11 -0.623 41.496 -11.900 1.00 10.58 N
ATOM 20 C5 C A 11 -0.225 42.480 -9.748 1.00 9.33 C
ATOM 21 C6 C A 11 -0.635 42.589 -8.478 1.00 9.70 C
ATOM 22 P G A 12 1.044 39.420 -4.233 1.00 10.45 P
ATOM 23 OP1 G A 12 1.240 38.870 -2.873 1.00 11.49 O
ATOM 24 OP2 G A 12 2.199 39.954 -4.990 1.00 10.63 O
ATOM 25 O5' G A 12 0.348 38.319 -5.157 1.00 10.65 O
TER
ATOM 1 O3' U B 9 2.569 47.723 -12.100 1.00 12.26 O
ATOM 2 P A B 10 2.970 46.526 -11.123 1.00 13.02 P
ATOM 3 OP1 A B 10 4.310 46.831 -10.570 1.00 16.02 O
ATOM 4 OP2 A B 10 2.738 45.255 -11.841 1.00 13.51 O
ATOM 5 O5' A B 10 1.888 46.620 -9.952 1.00 11.63 O
ATOM 6 C5' A B 10 1.955 47.677 -9.011 1.00 12.67 C
ATOM 7 C4' A B 10 0.847 47.519 -7.991 1.00 11.27 C
ATOM 8 O4' A B 10 -0.433 47.653 -8.649 1.00 10.72 O
ATOM 9 C3' A B 10 0.756 46.146 -7.348 1.00 10.72 C
ATOM 10 O3' A B 10 1.704 46.026 -6.313 1.00 12.74 O
ATOM 11 C2' A B 10 -0.661 46.190 -6.793 1.00 11.04 C
ATOM 12 O2' A B 10 -0.765 46.967 -5.616 1.00 13.74 O
ATOM 13 C1' A B 10 -1.388 46.889 -7.934 1.00 10.21 C
ATOM 14 N9 A B 10 -2.068 45.987 -8.857 1.00 9.56 N
ATOM 15 C8 A B 10 -1.756 45.724 -10.162 1.00 9.88 C
ATOM 16 N7 A B 10 -2.576 44.874 -10.737 1.00 8.93 N
ATOM 17 C5 A B 10 -3.488 44.564 -9.740 1.00 9.13 C
ATOM 18 C6 A B 10 -4.615 43.721 -9.703 1.00 9.28 C
ATOM 19 N6 A B 10 -5.032 43.001 -10.748 1.00 10.11 N
ATOM 20 N1 A B 10 -5.302 43.647 -8.544 1.00 9.30 N
ATOM 21 C2 A B 10 -4.885 44.368 -7.498 1.00 9.38 C
ATOM 22 N3 A B 10 -3.845 45.192 -7.411 1.00 9.59 N
ATOM 23 C4 A B 10 -3.186 45.245 -8.578 1.00 9.31 C
ATOM 24 P C B 11 2.408 44.615 -6.067 1.00 14.24 P
ATOM 25 OP1 C B 11 3.150 44.728 -4.794 1.00 17.08 O
ATOM 26 OP2 C B 11 3.122 44.228 -7.303 1.00 16.63 O
ATOM 27 O5' C B 11 1.183 43.602 -5.881 1.00 11.82 O
TER
Atoms:
C2: (-2.475,41.111,-8.917)
OP1: (3.150,44.728,-4.794)
OP2: (3.122,44.228,-7.303)
C4: (-0.986,41.646,-10.622)
O5': (1.183,43.602,-5.881)
C3': (-0.460,41.287,-5.264)
C1': (-2.212,42.022,-6.648)
O4': (-1.631,43.151,-6.023)
C5': (0.351,43.665,-4.732)
P: (2.408,44.615,-6.067)
O2: (-3.470,40.528,-8.469)
C4': (-0.823,42.718,-4.901)
C2': (-1.782,40.796,-5.848)
O2': (-2.750,40.492,-4.864)
N1: (-1.747,41.925,-8.051)
N3: (-2.069,40.990,-10.204)
N4: (-0.623,41.496,-11.900)
C6: (-0.635,42.589,-8.478)
C5: (-0.225,42.480,-9.748)
O3': (-0.075,40.558,-4.110)
OP1: (3.150,44.728,-4.794)
OP2: (3.122,44.228,-7.303)
C4: (-0.986,41.646,-10.622)
O5': (1.183,43.602,-5.881)
C3': (-0.460,41.287,-5.264)
C1': (-2.212,42.022,-6.648)
O4': (-1.631,43.151,-6.023)
C5': (0.351,43.665,-4.732)
P: (2.408,44.615,-6.067)
O2: (-3.470,40.528,-8.469)
C4': (-0.823,42.718,-4.901)
C2': (-1.782,40.796,-5.848)
O2': (-2.750,40.492,-4.864)
N1: (-1.747,41.925,-8.051)
N3: (-2.069,40.990,-10.204)
N4: (-0.623,41.496,-11.900)
C6: (-0.635,42.589,-8.478)
C5: (-0.225,42.480,-9.748)
O3': (-0.075,40.558,-4.110)
OP1: (4.310,46.831,-10.570)
OP2: (2.738,45.255,-11.841)
C3': (0.756,46.146,-7.348)
C1': (-1.388,46.889,-7.934)
C5': (1.955,47.677,-9.011)
O4': (-0.433,47.653,-8.649)
C8: (-1.756,45.724,-10.162)
O2': (-0.765,46.967,-5.616)
C6: (-4.615,43.721,-9.703)
C5: (-3.488,44.564,-9.740)
C4: (-3.186,45.245,-8.578)
P: (2.970,46.526,-11.123)
C4': (0.847,47.519,-7.991)
C2': (-0.661,46.190,-6.793)
C2: (-4.885,44.368,-7.498)
N1: (-5.302,43.647,-8.544)
N3: (-3.845,45.192,-7.411)
N6: (-5.032,43.001,-10.748)
N7: (-2.576,44.874,-10.737)
N9: (-2.068,45.987,-8.857)
O5': (1.888,46.620,-9.952)
O3': (1.704,46.026,-6.313)
OP2: (2.738,45.255,-11.841)
C3': (0.756,46.146,-7.348)
C1': (-1.388,46.889,-7.934)
C5': (1.955,47.677,-9.011)
O4': (-0.433,47.653,-8.649)
C8: (-1.756,45.724,-10.162)
O2': (-0.765,46.967,-5.616)
C6: (-4.615,43.721,-9.703)
C5: (-3.488,44.564,-9.740)
C4: (-3.186,45.245,-8.578)
P: (2.970,46.526,-11.123)
C4': (0.847,47.519,-7.991)
C2': (-0.661,46.190,-6.793)
C2: (-4.885,44.368,-7.498)
N1: (-5.302,43.647,-8.544)
N3: (-3.845,45.192,-7.411)
N6: (-5.032,43.001,-10.748)
N7: (-2.576,44.874,-10.737)
N9: (-2.068,45.987,-8.857)
O5': (1.888,46.620,-9.952)
O3': (1.704,46.026,-6.313)
Image (generated by PyMOL):