Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2DR5:B8:B24
Extra
PDB:
ATOM 1 O3' G A 7 -38.536 33.813 27.269 1.00115.95 O
ATOM 2 P G A 8 -39.091 35.202 26.659 1.00118.45 P
ATOM 3 OP1 G A 8 -40.564 35.068 26.533 1.00118.76 O
ATOM 4 OP2 G A 8 -38.278 35.498 25.447 1.00118.15 O
ATOM 5 O5' G A 8 -38.788 36.307 27.779 1.00118.28 O
ATOM 6 C5' G A 8 -38.808 37.720 27.477 1.00119.09 C
ATOM 7 C4' G A 8 -38.658 38.533 28.754 1.00119.24 C
ATOM 8 O4' G A 8 -37.702 37.841 29.605 1.00119.05 O
ATOM 9 C3' G A 8 -38.121 39.967 28.629 1.00119.67 C
ATOM 10 O3' G A 8 -39.125 40.975 28.444 1.00120.01 O
ATOM 11 C2' G A 8 -37.438 40.154 29.979 1.00119.30 C
ATOM 12 O2' G A 8 -38.347 40.409 31.030 1.00118.53 O
ATOM 13 C1' G A 8 -36.806 38.777 30.179 1.00119.22 C
ATOM 14 N9 G A 8 -35.535 38.672 29.467 1.00119.13 N
ATOM 15 C8 G A 8 -35.352 38.321 28.149 1.00118.69 C
ATOM 16 N7 G A 8 -34.101 38.354 27.778 1.00118.58 N
ATOM 17 C5 G A 8 -33.416 38.740 28.922 1.00118.65 C
ATOM 18 C6 G A 8 -32.032 38.949 29.133 1.00119.03 C
ATOM 19 O6 G A 8 -31.105 38.835 28.323 1.00119.46 O
ATOM 20 N1 G A 8 -31.767 39.328 30.448 1.00119.16 N
ATOM 21 C2 G A 8 -32.712 39.485 31.432 1.00118.39 C
ATOM 22 N2 G A 8 -32.254 39.842 32.640 1.00117.77 N
ATOM 23 N3 G A 8 -34.009 39.300 31.245 1.00118.21 N
ATOM 24 C4 G A 8 -34.287 38.931 29.976 1.00118.64 C
ATOM 25 P C A 9 -39.037 41.999 27.189 1.00121.56 P
ATOM 26 OP1 C A 9 -40.385 42.615 27.075 1.00121.53 O
ATOM 27 OP2 C A 9 -38.488 41.221 26.042 1.00121.11 O
ATOM 28 O5' C A 9 -37.995 43.168 27.577 1.00120.52 O
TER
ATOM 1 O3' C B 23 -27.590 40.287 34.761 1.00116.74 O
ATOM 2 P C B 24 -28.088 38.748 34.584 1.00120.47 P
ATOM 3 OP1 C B 24 -26.892 37.914 34.276 1.00119.99 O
ATOM 4 OP2 C B 24 -29.215 38.803 33.609 1.00120.01 O
ATOM 5 O5' C B 24 -28.698 38.250 35.985 1.00120.47 O
ATOM 6 C5' C B 24 -28.632 36.851 36.366 1.00119.74 C
ATOM 7 C4' C B 24 -29.911 36.107 35.978 1.00118.97 C
ATOM 8 O4' C B 24 -30.313 36.517 34.640 1.00118.79 O
ATOM 9 C3' C B 24 -29.808 34.578 35.893 1.00118.30 C
ATOM 10 O3' C B 24 -30.048 33.901 37.129 1.00117.85 O
ATOM 11 C2' C B 24 -30.889 34.225 34.878 1.00117.72 C
ATOM 12 O2' C B 24 -32.188 34.170 35.434 1.00116.41 O
ATOM 13 C1' C B 24 -30.779 35.395 33.903 1.00117.97 C
ATOM 14 N1 C B 24 -29.827 35.136 32.811 1.00117.86 N
ATOM 15 C2 C B 24 -30.236 34.355 31.725 1.00117.70 C
ATOM 16 O2 C B 24 -31.379 33.880 31.726 1.00117.54 O
ATOM 17 N3 C B 24 -29.368 34.133 30.708 1.00117.89 N
ATOM 18 C4 C B 24 -28.134 34.647 30.757 1.00118.08 C
ATOM 19 N4 C B 24 -27.309 34.405 29.734 1.00118.02 N
ATOM 20 C5 C B 24 -27.690 35.433 31.858 1.00117.88 C
ATOM 21 C6 C B 24 -28.561 35.651 32.852 1.00117.99 C
ATOM 22 P U B 25 -29.617 32.347 37.294 1.00118.31 P
ATOM 23 OP1 U B 25 -30.164 31.837 38.582 1.00117.50 O
ATOM 24 OP2 U B 25 -28.155 32.267 37.041 1.00117.89 O
ATOM 25 O5' U B 25 -30.354 31.573 36.102 1.00117.11 O
TER
ATOM 2 P G A 8 -39.091 35.202 26.659 1.00118.45 P
ATOM 3 OP1 G A 8 -40.564 35.068 26.533 1.00118.76 O
ATOM 4 OP2 G A 8 -38.278 35.498 25.447 1.00118.15 O
ATOM 5 O5' G A 8 -38.788 36.307 27.779 1.00118.28 O
ATOM 6 C5' G A 8 -38.808 37.720 27.477 1.00119.09 C
ATOM 7 C4' G A 8 -38.658 38.533 28.754 1.00119.24 C
ATOM 8 O4' G A 8 -37.702 37.841 29.605 1.00119.05 O
ATOM 9 C3' G A 8 -38.121 39.967 28.629 1.00119.67 C
ATOM 10 O3' G A 8 -39.125 40.975 28.444 1.00120.01 O
ATOM 11 C2' G A 8 -37.438 40.154 29.979 1.00119.30 C
ATOM 12 O2' G A 8 -38.347 40.409 31.030 1.00118.53 O
ATOM 13 C1' G A 8 -36.806 38.777 30.179 1.00119.22 C
ATOM 14 N9 G A 8 -35.535 38.672 29.467 1.00119.13 N
ATOM 15 C8 G A 8 -35.352 38.321 28.149 1.00118.69 C
ATOM 16 N7 G A 8 -34.101 38.354 27.778 1.00118.58 N
ATOM 17 C5 G A 8 -33.416 38.740 28.922 1.00118.65 C
ATOM 18 C6 G A 8 -32.032 38.949 29.133 1.00119.03 C
ATOM 19 O6 G A 8 -31.105 38.835 28.323 1.00119.46 O
ATOM 20 N1 G A 8 -31.767 39.328 30.448 1.00119.16 N
ATOM 21 C2 G A 8 -32.712 39.485 31.432 1.00118.39 C
ATOM 22 N2 G A 8 -32.254 39.842 32.640 1.00117.77 N
ATOM 23 N3 G A 8 -34.009 39.300 31.245 1.00118.21 N
ATOM 24 C4 G A 8 -34.287 38.931 29.976 1.00118.64 C
ATOM 25 P C A 9 -39.037 41.999 27.189 1.00121.56 P
ATOM 26 OP1 C A 9 -40.385 42.615 27.075 1.00121.53 O
ATOM 27 OP2 C A 9 -38.488 41.221 26.042 1.00121.11 O
ATOM 28 O5' C A 9 -37.995 43.168 27.577 1.00120.52 O
TER
ATOM 1 O3' C B 23 -27.590 40.287 34.761 1.00116.74 O
ATOM 2 P C B 24 -28.088 38.748 34.584 1.00120.47 P
ATOM 3 OP1 C B 24 -26.892 37.914 34.276 1.00119.99 O
ATOM 4 OP2 C B 24 -29.215 38.803 33.609 1.00120.01 O
ATOM 5 O5' C B 24 -28.698 38.250 35.985 1.00120.47 O
ATOM 6 C5' C B 24 -28.632 36.851 36.366 1.00119.74 C
ATOM 7 C4' C B 24 -29.911 36.107 35.978 1.00118.97 C
ATOM 8 O4' C B 24 -30.313 36.517 34.640 1.00118.79 O
ATOM 9 C3' C B 24 -29.808 34.578 35.893 1.00118.30 C
ATOM 10 O3' C B 24 -30.048 33.901 37.129 1.00117.85 O
ATOM 11 C2' C B 24 -30.889 34.225 34.878 1.00117.72 C
ATOM 12 O2' C B 24 -32.188 34.170 35.434 1.00116.41 O
ATOM 13 C1' C B 24 -30.779 35.395 33.903 1.00117.97 C
ATOM 14 N1 C B 24 -29.827 35.136 32.811 1.00117.86 N
ATOM 15 C2 C B 24 -30.236 34.355 31.725 1.00117.70 C
ATOM 16 O2 C B 24 -31.379 33.880 31.726 1.00117.54 O
ATOM 17 N3 C B 24 -29.368 34.133 30.708 1.00117.89 N
ATOM 18 C4 C B 24 -28.134 34.647 30.757 1.00118.08 C
ATOM 19 N4 C B 24 -27.309 34.405 29.734 1.00118.02 N
ATOM 20 C5 C B 24 -27.690 35.433 31.858 1.00117.88 C
ATOM 21 C6 C B 24 -28.561 35.651 32.852 1.00117.99 C
ATOM 22 P U B 25 -29.617 32.347 37.294 1.00118.31 P
ATOM 23 OP1 U B 25 -30.164 31.837 38.582 1.00117.50 O
ATOM 24 OP2 U B 25 -28.155 32.267 37.041 1.00117.89 O
ATOM 25 O5' U B 25 -30.354 31.573 36.102 1.00117.11 O
TER
Atoms:
OP1: (-40.564,35.068,26.533)
OP2: (-38.278,35.498,25.447)
C3': (-38.121,39.967,28.629)
C1': (-36.806,38.777,30.179)
C5': (-38.808,37.720,27.477)
O6: (-31.105,38.835,28.323)
O4': (-37.702,37.841,29.605)
C8: (-35.352,38.321,28.149)
C2: (-32.712,39.485,31.432)
C6: (-32.032,38.949,29.133)
C5: (-33.416,38.740,28.922)
C4: (-34.287,38.931,29.976)
P: (-39.091,35.202,26.659)
C4': (-38.658,38.533,28.754)
C2': (-37.438,40.154,29.979)
O2': (-38.347,40.409,31.030)
N1: (-31.767,39.328,30.448)
N2: (-32.254,39.842,32.640)
N3: (-34.009,39.300,31.245)
N7: (-34.101,38.354,27.778)
N9: (-35.535,38.672,29.467)
O5': (-38.788,36.307,27.779)
O3': (-39.125,40.975,28.444)
OP2: (-38.278,35.498,25.447)
C3': (-38.121,39.967,28.629)
C1': (-36.806,38.777,30.179)
C5': (-38.808,37.720,27.477)
O6: (-31.105,38.835,28.323)
O4': (-37.702,37.841,29.605)
C8: (-35.352,38.321,28.149)
C2: (-32.712,39.485,31.432)
C6: (-32.032,38.949,29.133)
C5: (-33.416,38.740,28.922)
C4: (-34.287,38.931,29.976)
P: (-39.091,35.202,26.659)
C4': (-38.658,38.533,28.754)
C2': (-37.438,40.154,29.979)
O2': (-38.347,40.409,31.030)
N1: (-31.767,39.328,30.448)
N2: (-32.254,39.842,32.640)
N3: (-34.009,39.300,31.245)
N7: (-34.101,38.354,27.778)
N9: (-35.535,38.672,29.467)
O5': (-38.788,36.307,27.779)
O3': (-39.125,40.975,28.444)
C2: (-30.236,34.355,31.725)
OP1: (-26.892,37.914,34.276)
OP2: (-29.215,38.803,33.609)
C4: (-28.134,34.647,30.757)
O5': (-28.698,38.250,35.985)
C3': (-29.808,34.578,35.893)
C1': (-30.779,35.395,33.903)
O4': (-30.313,36.517,34.640)
C5': (-28.632,36.851,36.366)
P: (-28.088,38.748,34.584)
O2: (-31.379,33.880,31.726)
C4': (-29.911,36.107,35.978)
C2': (-30.889,34.225,34.878)
O2': (-32.188,34.170,35.434)
N1: (-29.827,35.136,32.811)
N3: (-29.368,34.133,30.708)
N4: (-27.309,34.405,29.734)
C6: (-28.561,35.651,32.852)
C5: (-27.690,35.433,31.858)
O3': (-30.048,33.901,37.129)
OP1: (-26.892,37.914,34.276)
OP2: (-29.215,38.803,33.609)
C4: (-28.134,34.647,30.757)
O5': (-28.698,38.250,35.985)
C3': (-29.808,34.578,35.893)
C1': (-30.779,35.395,33.903)
O4': (-30.313,36.517,34.640)
C5': (-28.632,36.851,36.366)
P: (-28.088,38.748,34.584)
O2: (-31.379,33.880,31.726)
C4': (-29.911,36.107,35.978)
C2': (-30.889,34.225,34.878)
O2': (-32.188,34.170,35.434)
N1: (-29.827,35.136,32.811)
N3: (-29.368,34.133,30.708)
N4: (-27.309,34.405,29.734)
C6: (-28.561,35.651,32.852)
C5: (-27.690,35.433,31.858)
O3': (-30.048,33.901,37.129)
Image (generated by PyMOL):