Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0349:0348
Extra
PDB:
ATOM 1 O3' A A 348 54.111 113.925 4.934 1.00 81.57 O
ATOM 2 P C A 349 54.868 113.571 3.569 1.00 83.78 P
ATOM 3 OP1 C A 349 54.961 112.091 3.491 1.00 84.48 O
ATOM 4 OP2 C A 349 56.106 114.389 3.504 1.00 84.99 O
ATOM 5 O5' C A 349 53.866 114.095 2.449 1.00 83.47 O
ATOM 6 C5' C A 349 52.543 113.549 2.335 1.00 84.67 C
ATOM 7 C4' C A 349 51.729 114.355 1.357 1.00 86.83 C
ATOM 8 O4' C A 349 51.503 115.686 1.894 1.00 86.95 O
ATOM 9 C3' C A 349 52.383 114.618 0.009 1.00 88.35 C
ATOM 10 O3' C A 349 52.291 113.503 -0.877 1.00 90.56 O
ATOM 11 C2' C A 349 51.615 115.841 -0.475 1.00 87.45 C
ATOM 12 O2' C A 349 50.332 115.516 -0.978 1.00 86.07 O
ATOM 13 C1' C A 349 51.472 116.631 0.831 1.00 87.08 C
ATOM 14 N1 C A 349 52.563 117.608 1.038 1.00 86.66 N
ATOM 15 C2 C A 349 52.405 118.924 0.556 1.00 86.31 C
ATOM 16 O2 C A 349 51.342 119.241 -0.005 1.00 85.42 O
ATOM 17 N3 C A 349 53.415 119.813 0.720 1.00 86.15 N
ATOM 18 C4 C A 349 54.541 119.439 1.339 1.00 86.68 C
ATOM 19 N4 C A 349 55.514 120.345 1.473 1.00 86.05 N
ATOM 20 C5 C A 349 54.721 118.118 1.848 1.00 86.99 C
ATOM 21 C6 C A 349 53.719 117.245 1.678 1.00 86.84 C
ATOM 22 P G A 350 53.519 113.168 -1.865 1.00 91.49 P
ATOM 23 OP1 G A 350 53.159 111.938 -2.612 1.00 91.60 O
ATOM 24 OP2 G A 350 54.788 113.204 -1.089 1.00 90.24 O
ATOM 25 O5' G A 350 53.522 114.394 -2.887 1.00 93.13 O
TER
ATOM 1 O3' U B 347 57.693 117.404 8.397 1.00 77.40 O
ATOM 2 P A B 348 57.770 116.666 6.967 1.00 78.45 P
ATOM 3 OP1 A B 348 58.425 115.349 7.192 1.00 78.86 O
ATOM 4 OP2 A B 348 58.346 117.605 5.975 1.00 78.04 O
ATOM 5 O5' A B 348 56.244 116.414 6.586 1.00 77.98 O
ATOM 6 C5' A B 348 55.424 115.519 7.364 1.00 77.82 C
ATOM 7 C4' A B 348 54.023 115.466 6.801 1.00 77.97 C
ATOM 8 O4' A B 348 53.343 116.726 7.029 1.00 77.32 O
ATOM 9 C3' A B 348 53.943 115.280 5.300 1.00 78.67 C
ATOM 10 O3' A B 348 54.111 113.925 4.934 1.00 81.57 O
ATOM 11 C2' A B 348 52.559 115.818 4.974 1.00 77.27 C
ATOM 12 O2' A B 348 51.532 114.893 5.262 1.00 76.17 O
ATOM 13 C1' A B 348 52.470 116.997 5.942 1.00 76.92 C
ATOM 14 N9 A B 348 52.855 118.279 5.352 1.00 76.44 N
ATOM 15 C8 A B 348 54.045 118.953 5.494 1.00 76.35 C
ATOM 16 N7 A B 348 54.076 120.108 4.877 1.00 76.12 N
ATOM 17 C5 A B 348 52.825 120.202 4.280 1.00 76.33 C
ATOM 18 C6 A B 348 52.224 121.201 3.487 1.00 75.31 C
ATOM 19 N6 A B 348 52.824 122.349 3.159 1.00 73.82 N
ATOM 20 N1 A B 348 50.968 120.976 3.040 1.00 74.99 N
ATOM 21 C2 A B 348 50.364 119.825 3.374 1.00 75.16 C
ATOM 22 N3 A B 348 50.818 118.818 4.120 1.00 75.73 N
ATOM 23 C4 A B 348 52.069 119.072 4.549 1.00 76.59 C
ATOM 24 P C B 349 54.868 113.571 3.569 1.00 83.78 P
ATOM 25 OP1 C B 349 54.961 112.091 3.491 1.00 84.48 O
ATOM 26 OP2 C B 349 56.106 114.389 3.504 1.00 84.99 O
ATOM 27 O5' C B 349 53.866 114.095 2.449 1.00 83.47 O
TER
ATOM 2 P C A 349 54.868 113.571 3.569 1.00 83.78 P
ATOM 3 OP1 C A 349 54.961 112.091 3.491 1.00 84.48 O
ATOM 4 OP2 C A 349 56.106 114.389 3.504 1.00 84.99 O
ATOM 5 O5' C A 349 53.866 114.095 2.449 1.00 83.47 O
ATOM 6 C5' C A 349 52.543 113.549 2.335 1.00 84.67 C
ATOM 7 C4' C A 349 51.729 114.355 1.357 1.00 86.83 C
ATOM 8 O4' C A 349 51.503 115.686 1.894 1.00 86.95 O
ATOM 9 C3' C A 349 52.383 114.618 0.009 1.00 88.35 C
ATOM 10 O3' C A 349 52.291 113.503 -0.877 1.00 90.56 O
ATOM 11 C2' C A 349 51.615 115.841 -0.475 1.00 87.45 C
ATOM 12 O2' C A 349 50.332 115.516 -0.978 1.00 86.07 O
ATOM 13 C1' C A 349 51.472 116.631 0.831 1.00 87.08 C
ATOM 14 N1 C A 349 52.563 117.608 1.038 1.00 86.66 N
ATOM 15 C2 C A 349 52.405 118.924 0.556 1.00 86.31 C
ATOM 16 O2 C A 349 51.342 119.241 -0.005 1.00 85.42 O
ATOM 17 N3 C A 349 53.415 119.813 0.720 1.00 86.15 N
ATOM 18 C4 C A 349 54.541 119.439 1.339 1.00 86.68 C
ATOM 19 N4 C A 349 55.514 120.345 1.473 1.00 86.05 N
ATOM 20 C5 C A 349 54.721 118.118 1.848 1.00 86.99 C
ATOM 21 C6 C A 349 53.719 117.245 1.678 1.00 86.84 C
ATOM 22 P G A 350 53.519 113.168 -1.865 1.00 91.49 P
ATOM 23 OP1 G A 350 53.159 111.938 -2.612 1.00 91.60 O
ATOM 24 OP2 G A 350 54.788 113.204 -1.089 1.00 90.24 O
ATOM 25 O5' G A 350 53.522 114.394 -2.887 1.00 93.13 O
TER
ATOM 1 O3' U B 347 57.693 117.404 8.397 1.00 77.40 O
ATOM 2 P A B 348 57.770 116.666 6.967 1.00 78.45 P
ATOM 3 OP1 A B 348 58.425 115.349 7.192 1.00 78.86 O
ATOM 4 OP2 A B 348 58.346 117.605 5.975 1.00 78.04 O
ATOM 5 O5' A B 348 56.244 116.414 6.586 1.00 77.98 O
ATOM 6 C5' A B 348 55.424 115.519 7.364 1.00 77.82 C
ATOM 7 C4' A B 348 54.023 115.466 6.801 1.00 77.97 C
ATOM 8 O4' A B 348 53.343 116.726 7.029 1.00 77.32 O
ATOM 9 C3' A B 348 53.943 115.280 5.300 1.00 78.67 C
ATOM 10 O3' A B 348 54.111 113.925 4.934 1.00 81.57 O
ATOM 11 C2' A B 348 52.559 115.818 4.974 1.00 77.27 C
ATOM 12 O2' A B 348 51.532 114.893 5.262 1.00 76.17 O
ATOM 13 C1' A B 348 52.470 116.997 5.942 1.00 76.92 C
ATOM 14 N9 A B 348 52.855 118.279 5.352 1.00 76.44 N
ATOM 15 C8 A B 348 54.045 118.953 5.494 1.00 76.35 C
ATOM 16 N7 A B 348 54.076 120.108 4.877 1.00 76.12 N
ATOM 17 C5 A B 348 52.825 120.202 4.280 1.00 76.33 C
ATOM 18 C6 A B 348 52.224 121.201 3.487 1.00 75.31 C
ATOM 19 N6 A B 348 52.824 122.349 3.159 1.00 73.82 N
ATOM 20 N1 A B 348 50.968 120.976 3.040 1.00 74.99 N
ATOM 21 C2 A B 348 50.364 119.825 3.374 1.00 75.16 C
ATOM 22 N3 A B 348 50.818 118.818 4.120 1.00 75.73 N
ATOM 23 C4 A B 348 52.069 119.072 4.549 1.00 76.59 C
ATOM 24 P C B 349 54.868 113.571 3.569 1.00 83.78 P
ATOM 25 OP1 C B 349 54.961 112.091 3.491 1.00 84.48 O
ATOM 26 OP2 C B 349 56.106 114.389 3.504 1.00 84.99 O
ATOM 27 O5' C B 349 53.866 114.095 2.449 1.00 83.47 O
TER
Atoms:
C2: (52.405,118.924,0.556)
OP1: (54.961,112.091,3.491)
OP2: (56.106,114.389,3.504)
C4: (54.541,119.439,1.339)
O5': (53.866,114.095,2.449)
C3': (52.383,114.618,0.009)
C1': (51.472,116.631,0.831)
O4': (51.503,115.686,1.894)
C5': (52.543,113.549,2.335)
P: (54.868,113.571,3.569)
O2: (51.342,119.241,-0.005)
C4': (51.729,114.355,1.357)
C2': (51.615,115.841,-0.475)
O2': (50.332,115.516,-0.978)
N1: (52.563,117.608,1.038)
N3: (53.415,119.813,0.720)
N4: (55.514,120.345,1.473)
C6: (53.719,117.245,1.678)
C5: (54.721,118.118,1.848)
O3': (52.291,113.503,-0.877)
OP1: (54.961,112.091,3.491)
OP2: (56.106,114.389,3.504)
C4: (54.541,119.439,1.339)
O5': (53.866,114.095,2.449)
C3': (52.383,114.618,0.009)
C1': (51.472,116.631,0.831)
O4': (51.503,115.686,1.894)
C5': (52.543,113.549,2.335)
P: (54.868,113.571,3.569)
O2: (51.342,119.241,-0.005)
C4': (51.729,114.355,1.357)
C2': (51.615,115.841,-0.475)
O2': (50.332,115.516,-0.978)
N1: (52.563,117.608,1.038)
N3: (53.415,119.813,0.720)
N4: (55.514,120.345,1.473)
C6: (53.719,117.245,1.678)
C5: (54.721,118.118,1.848)
O3': (52.291,113.503,-0.877)
OP1: (58.425,115.349,7.192)
OP2: (58.346,117.605,5.975)
C3': (53.943,115.280,5.300)
C1': (52.470,116.997,5.942)
C5': (55.424,115.519,7.364)
O4': (53.343,116.726,7.029)
C8: (54.045,118.953,5.494)
O2': (51.532,114.893,5.262)
C6: (52.224,121.201,3.487)
C5: (52.825,120.202,4.280)
C4: (52.069,119.072,4.549)
P: (57.770,116.666,6.967)
C4': (54.023,115.466,6.801)
C2': (52.559,115.818,4.974)
C2: (50.364,119.825,3.374)
N1: (50.968,120.976,3.040)
N3: (50.818,118.818,4.120)
N6: (52.824,122.349,3.159)
N7: (54.076,120.108,4.877)
N9: (52.855,118.279,5.352)
O5': (56.244,116.414,6.586)
O3': (54.111,113.925,4.934)
OP2: (58.346,117.605,5.975)
C3': (53.943,115.280,5.300)
C1': (52.470,116.997,5.942)
C5': (55.424,115.519,7.364)
O4': (53.343,116.726,7.029)
C8: (54.045,118.953,5.494)
O2': (51.532,114.893,5.262)
C6: (52.224,121.201,3.487)
C5: (52.825,120.202,4.280)
C4: (52.069,119.072,4.549)
P: (57.770,116.666,6.967)
C4': (54.023,115.466,6.801)
C2': (52.559,115.818,4.974)
C2: (50.364,119.825,3.374)
N1: (50.968,120.976,3.040)
N3: (50.818,118.818,4.120)
N6: (52.824,122.349,3.159)
N7: (54.076,120.108,4.877)
N9: (52.855,118.279,5.352)
O5': (56.244,116.414,6.586)
O3': (54.111,113.925,4.934)
Image (generated by PyMOL):