Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JJ2:0562:0561
Extra
PDB:
ATOM 1 O3' A A 561 -13.351 88.222 129.504 1.00 83.62 O
ATOM 2 P C A 562 -12.355 87.859 130.717 1.00 83.79 P
ATOM 3 OP1 C A 562 -13.203 87.469 131.871 1.00 84.91 O
ATOM 4 OP2 C A 562 -11.371 88.964 130.872 1.00 83.65 O
ATOM 5 O5' C A 562 -11.582 86.561 130.207 1.00 82.54 O
ATOM 6 C5' C A 562 -12.301 85.356 129.882 1.00 82.23 C
ATOM 7 C4' C A 562 -11.371 84.333 129.270 1.00 82.77 C
ATOM 8 O4' C A 562 -10.885 84.811 127.984 1.00 83.98 O
ATOM 9 C3' C A 562 -10.092 84.049 130.035 1.00 82.51 C
ATOM 10 O3' C A 562 -10.258 83.206 131.158 1.00 81.79 O
ATOM 11 C2' C A 562 -9.216 83.439 128.954 1.00 83.03 C
ATOM 12 O2' C A 562 -9.564 82.100 128.653 1.00 82.15 O
ATOM 13 C1' C A 562 -9.549 84.354 127.775 1.00 83.84 C
ATOM 14 N1 C A 562 -8.638 85.524 127.748 1.00 84.74 N
ATOM 15 C2 C A 562 -7.439 85.444 127.012 1.00 85.02 C
ATOM 16 O2 C A 562 -7.199 84.422 126.349 1.00 85.04 O
ATOM 17 N3 C A 562 -6.576 86.487 127.045 1.00 85.19 N
ATOM 18 C4 C A 562 -6.873 87.581 127.755 1.00 86.01 C
ATOM 19 N4 C A 562 -5.987 88.581 127.770 1.00 85.91 N
ATOM 20 C5 C A 562 -8.091 87.700 128.483 1.00 85.21 C
ATOM 21 C6 C A 562 -8.936 86.662 128.450 1.00 85.40 C
ATOM 22 P G A 563 -9.221 83.317 132.381 1.00 81.86 P
ATOM 23 OP1 G A 563 -9.730 82.456 133.474 1.00 83.23 O
ATOM 24 OP2 G A 563 -8.956 84.758 132.646 1.00 81.08 O
ATOM 25 O5' G A 563 -7.895 82.647 131.807 1.00 81.06 O
TER
ATOM 1 O3' G B 560 -12.845 94.084 127.872 1.00 81.38 O
ATOM 2 P A B 561 -12.360 92.901 128.848 1.00 83.31 P
ATOM 3 OP1 A B 561 -13.285 92.883 130.009 1.00 84.46 O
ATOM 4 OP2 A B 561 -10.898 93.042 129.083 1.00 82.88 O
ATOM 5 O5' A B 561 -12.599 91.575 127.997 1.00 82.02 O
ATOM 6 C5' A B 561 -13.906 90.982 127.904 1.00 81.99 C
ATOM 7 C4' A B 561 -13.790 89.543 127.473 1.00 82.15 C
ATOM 8 O4' A B 561 -13.254 89.500 126.125 1.00 83.10 O
ATOM 9 C3' A B 561 -12.815 88.697 128.276 1.00 82.81 C
ATOM 10 O3' A B 561 -13.351 88.222 129.504 1.00 83.62 O
ATOM 11 C2' A B 561 -12.477 87.587 127.292 1.00 82.77 C
ATOM 12 O2' A B 561 -13.484 86.600 127.174 1.00 82.95 O
ATOM 13 C1' A B 561 -12.381 88.383 125.990 1.00 82.62 C
ATOM 14 N9 A B 561 -11.021 88.884 125.781 1.00 81.04 N
ATOM 15 C8 A B 561 -10.502 90.105 126.149 1.00 80.52 C
ATOM 16 N7 A B 561 -9.234 90.251 125.855 1.00 79.84 N
ATOM 17 C5 A B 561 -8.893 89.051 125.245 1.00 79.83 C
ATOM 18 C6 A B 561 -7.688 88.576 124.704 1.00 79.30 C
ATOM 19 N6 A B 561 -6.555 89.284 124.686 1.00 78.39 N
ATOM 20 N1 A B 561 -7.685 87.332 124.173 1.00 79.19 N
ATOM 21 C2 A B 561 -8.822 86.624 124.189 1.00 78.77 C
ATOM 22 N3 A B 561 -10.016 86.962 124.668 1.00 79.27 N
ATOM 23 C4 A B 561 -9.985 88.202 125.188 1.00 79.86 C
ATOM 24 P C B 562 -12.355 87.859 130.717 1.00 83.79 P
ATOM 25 OP1 C B 562 -13.203 87.469 131.871 1.00 84.91 O
ATOM 26 OP2 C B 562 -11.371 88.964 130.872 1.00 83.65 O
ATOM 27 O5' C B 562 -11.582 86.561 130.207 1.00 82.54 O
TER
ATOM 2 P C A 562 -12.355 87.859 130.717 1.00 83.79 P
ATOM 3 OP1 C A 562 -13.203 87.469 131.871 1.00 84.91 O
ATOM 4 OP2 C A 562 -11.371 88.964 130.872 1.00 83.65 O
ATOM 5 O5' C A 562 -11.582 86.561 130.207 1.00 82.54 O
ATOM 6 C5' C A 562 -12.301 85.356 129.882 1.00 82.23 C
ATOM 7 C4' C A 562 -11.371 84.333 129.270 1.00 82.77 C
ATOM 8 O4' C A 562 -10.885 84.811 127.984 1.00 83.98 O
ATOM 9 C3' C A 562 -10.092 84.049 130.035 1.00 82.51 C
ATOM 10 O3' C A 562 -10.258 83.206 131.158 1.00 81.79 O
ATOM 11 C2' C A 562 -9.216 83.439 128.954 1.00 83.03 C
ATOM 12 O2' C A 562 -9.564 82.100 128.653 1.00 82.15 O
ATOM 13 C1' C A 562 -9.549 84.354 127.775 1.00 83.84 C
ATOM 14 N1 C A 562 -8.638 85.524 127.748 1.00 84.74 N
ATOM 15 C2 C A 562 -7.439 85.444 127.012 1.00 85.02 C
ATOM 16 O2 C A 562 -7.199 84.422 126.349 1.00 85.04 O
ATOM 17 N3 C A 562 -6.576 86.487 127.045 1.00 85.19 N
ATOM 18 C4 C A 562 -6.873 87.581 127.755 1.00 86.01 C
ATOM 19 N4 C A 562 -5.987 88.581 127.770 1.00 85.91 N
ATOM 20 C5 C A 562 -8.091 87.700 128.483 1.00 85.21 C
ATOM 21 C6 C A 562 -8.936 86.662 128.450 1.00 85.40 C
ATOM 22 P G A 563 -9.221 83.317 132.381 1.00 81.86 P
ATOM 23 OP1 G A 563 -9.730 82.456 133.474 1.00 83.23 O
ATOM 24 OP2 G A 563 -8.956 84.758 132.646 1.00 81.08 O
ATOM 25 O5' G A 563 -7.895 82.647 131.807 1.00 81.06 O
TER
ATOM 1 O3' G B 560 -12.845 94.084 127.872 1.00 81.38 O
ATOM 2 P A B 561 -12.360 92.901 128.848 1.00 83.31 P
ATOM 3 OP1 A B 561 -13.285 92.883 130.009 1.00 84.46 O
ATOM 4 OP2 A B 561 -10.898 93.042 129.083 1.00 82.88 O
ATOM 5 O5' A B 561 -12.599 91.575 127.997 1.00 82.02 O
ATOM 6 C5' A B 561 -13.906 90.982 127.904 1.00 81.99 C
ATOM 7 C4' A B 561 -13.790 89.543 127.473 1.00 82.15 C
ATOM 8 O4' A B 561 -13.254 89.500 126.125 1.00 83.10 O
ATOM 9 C3' A B 561 -12.815 88.697 128.276 1.00 82.81 C
ATOM 10 O3' A B 561 -13.351 88.222 129.504 1.00 83.62 O
ATOM 11 C2' A B 561 -12.477 87.587 127.292 1.00 82.77 C
ATOM 12 O2' A B 561 -13.484 86.600 127.174 1.00 82.95 O
ATOM 13 C1' A B 561 -12.381 88.383 125.990 1.00 82.62 C
ATOM 14 N9 A B 561 -11.021 88.884 125.781 1.00 81.04 N
ATOM 15 C8 A B 561 -10.502 90.105 126.149 1.00 80.52 C
ATOM 16 N7 A B 561 -9.234 90.251 125.855 1.00 79.84 N
ATOM 17 C5 A B 561 -8.893 89.051 125.245 1.00 79.83 C
ATOM 18 C6 A B 561 -7.688 88.576 124.704 1.00 79.30 C
ATOM 19 N6 A B 561 -6.555 89.284 124.686 1.00 78.39 N
ATOM 20 N1 A B 561 -7.685 87.332 124.173 1.00 79.19 N
ATOM 21 C2 A B 561 -8.822 86.624 124.189 1.00 78.77 C
ATOM 22 N3 A B 561 -10.016 86.962 124.668 1.00 79.27 N
ATOM 23 C4 A B 561 -9.985 88.202 125.188 1.00 79.86 C
ATOM 24 P C B 562 -12.355 87.859 130.717 1.00 83.79 P
ATOM 25 OP1 C B 562 -13.203 87.469 131.871 1.00 84.91 O
ATOM 26 OP2 C B 562 -11.371 88.964 130.872 1.00 83.65 O
ATOM 27 O5' C B 562 -11.582 86.561 130.207 1.00 82.54 O
TER
Atoms:
C2: (-7.439,85.444,127.012)
OP1: (-13.203,87.469,131.871)
OP2: (-11.371,88.964,130.872)
C4: (-6.873,87.581,127.755)
O5': (-11.582,86.561,130.207)
C3': (-10.092,84.049,130.035)
C1': (-9.549,84.354,127.775)
O4': (-10.885,84.811,127.984)
C5': (-12.301,85.356,129.882)
P: (-12.355,87.859,130.717)
O2: (-7.199,84.422,126.349)
C4': (-11.371,84.333,129.270)
C2': (-9.216,83.439,128.954)
O2': (-9.564,82.100,128.653)
N1: (-8.638,85.524,127.748)
N3: (-6.576,86.487,127.045)
N4: (-5.987,88.581,127.770)
C6: (-8.936,86.662,128.450)
C5: (-8.091,87.700,128.483)
O3': (-10.258,83.206,131.158)
OP1: (-13.203,87.469,131.871)
OP2: (-11.371,88.964,130.872)
C4: (-6.873,87.581,127.755)
O5': (-11.582,86.561,130.207)
C3': (-10.092,84.049,130.035)
C1': (-9.549,84.354,127.775)
O4': (-10.885,84.811,127.984)
C5': (-12.301,85.356,129.882)
P: (-12.355,87.859,130.717)
O2: (-7.199,84.422,126.349)
C4': (-11.371,84.333,129.270)
C2': (-9.216,83.439,128.954)
O2': (-9.564,82.100,128.653)
N1: (-8.638,85.524,127.748)
N3: (-6.576,86.487,127.045)
N4: (-5.987,88.581,127.770)
C6: (-8.936,86.662,128.450)
C5: (-8.091,87.700,128.483)
O3': (-10.258,83.206,131.158)
OP1: (-13.285,92.883,130.009)
OP2: (-10.898,93.042,129.083)
C3': (-12.815,88.697,128.276)
C1': (-12.381,88.383,125.990)
C5': (-13.906,90.982,127.904)
O4': (-13.254,89.500,126.125)
C8: (-10.502,90.105,126.149)
O2': (-13.484,86.600,127.174)
C6: (-7.688,88.576,124.704)
C5: (-8.893,89.051,125.245)
C4: (-9.985,88.202,125.188)
P: (-12.360,92.901,128.848)
C4': (-13.790,89.543,127.473)
C2': (-12.477,87.587,127.292)
C2: (-8.822,86.624,124.189)
N1: (-7.685,87.332,124.173)
N3: (-10.016,86.962,124.668)
N6: (-6.555,89.284,124.686)
N7: (-9.234,90.251,125.855)
N9: (-11.021,88.884,125.781)
O5': (-12.599,91.575,127.997)
O3': (-13.351,88.222,129.504)
OP2: (-10.898,93.042,129.083)
C3': (-12.815,88.697,128.276)
C1': (-12.381,88.383,125.990)
C5': (-13.906,90.982,127.904)
O4': (-13.254,89.500,126.125)
C8: (-10.502,90.105,126.149)
O2': (-13.484,86.600,127.174)
C6: (-7.688,88.576,124.704)
C5: (-8.893,89.051,125.245)
C4: (-9.985,88.202,125.188)
P: (-12.360,92.901,128.848)
C4': (-13.790,89.543,127.473)
C2': (-12.477,87.587,127.292)
C2: (-8.822,86.624,124.189)
N1: (-7.685,87.332,124.173)
N3: (-10.016,86.962,124.668)
N6: (-6.555,89.284,124.686)
N7: (-9.234,90.251,125.855)
N9: (-11.021,88.884,125.781)
O5': (-12.599,91.575,127.997)
O3': (-13.351,88.222,129.504)
Image (generated by PyMOL):