Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:01234:01233
Extra
PDB:
ATOM 1 O3' A A1233 5.006 79.839 67.960 1.00 47.22 O
ATOM 2 P C A1234 5.417 79.999 66.417 1.00 48.85 P
ATOM 3 OP1 C A1234 4.960 78.791 65.697 1.00 48.85 O
ATOM 4 OP2 C A1234 6.852 80.377 66.364 1.00 50.82 O
ATOM 5 O5' C A1234 4.556 81.250 65.937 1.00 46.08 O
ATOM 6 C5' C A1234 3.129 81.203 65.987 1.00 45.89 C
ATOM 7 C4' C A1234 2.540 82.547 65.652 1.00 46.88 C
ATOM 8 O4' C A1234 2.814 83.486 66.716 1.00 47.10 O
ATOM 9 C3' C A1234 3.099 83.230 64.423 1.00 47.61 C
ATOM 10 O3' C A1234 2.561 82.711 63.224 1.00 50.37 O
ATOM 11 C2' C A1234 2.710 84.677 64.667 1.00 46.85 C
ATOM 12 O2' C A1234 1.356 84.930 64.376 1.00 46.80 O
ATOM 13 C1' C A1234 2.947 84.789 66.173 1.00 47.00 C
ATOM 14 N1 C A1234 4.303 85.283 66.465 1.00 48.14 N
ATOM 15 C2 C A1234 4.500 86.661 66.587 1.00 49.44 C
ATOM 16 O2 C A1234 3.515 87.421 66.530 1.00 51.45 O
ATOM 17 N3 C A1234 5.753 87.134 66.772 1.00 49.06 N
ATOM 18 C4 C A1234 6.777 86.288 66.861 1.00 48.13 C
ATOM 19 N4 C A1234 7.991 86.801 67.024 1.00 49.19 N
ATOM 20 C5 C A1234 6.599 84.877 66.782 1.00 48.03 C
ATOM 21 C6 C A1234 5.359 84.422 66.587 1.00 47.59 C
ATOM 22 P U A1235 3.514 82.555 61.948 1.00 53.03 P
ATOM 23 OP1 U A1235 2.699 82.153 60.780 1.00 53.83 O
ATOM 24 OP2 U A1235 4.677 81.726 62.351 1.00 52.07 O
ATOM 25 O5' U A1235 4.018 84.041 61.706 1.00 54.49 O
TER
ATOM 1 O3' C B1232 10.186 79.493 71.131 1.00 47.46 O
ATOM 2 P A B1233 9.672 79.584 69.615 1.00 47.74 P
ATOM 3 OP1 A B1233 9.580 78.179 69.159 1.00 49.00 O
ATOM 4 OP2 A B1233 10.491 80.544 68.845 1.00 47.41 O
ATOM 5 O5' A B1233 8.207 80.196 69.749 1.00 45.75 O
ATOM 6 C5' A B1233 7.139 79.417 70.307 1.00 43.99 C
ATOM 7 C4' A B1233 5.835 80.172 70.234 1.00 44.52 C
ATOM 8 O4' A B1233 5.876 81.319 71.118 1.00 45.60 O
ATOM 9 C3' A B1233 5.477 80.787 68.898 1.00 45.57 C
ATOM 10 O3' A B1233 5.006 79.839 67.960 1.00 47.22 O
ATOM 11 C2' A B1233 4.441 81.828 69.300 1.00 45.90 C
ATOM 12 O2' A B1233 3.167 81.294 69.602 1.00 45.03 O
ATOM 13 C1' A B1233 5.058 82.357 70.592 1.00 45.79 C
ATOM 14 N9 A B1233 5.885 83.545 70.369 1.00 46.43 N
ATOM 15 C8 A B1233 7.235 83.623 70.109 1.00 46.36 C
ATOM 16 N7 A B1233 7.673 84.848 69.951 1.00 46.08 N
ATOM 17 C5 A B1233 6.537 85.631 70.118 1.00 46.34 C
ATOM 18 C6 A B1233 6.328 87.020 70.070 1.00 46.09 C
ATOM 19 N6 A B1233 7.292 87.907 69.820 1.00 46.43 N
ATOM 20 N1 A B1233 5.075 87.473 70.284 1.00 45.88 N
ATOM 21 C2 A B1233 4.104 86.586 70.524 1.00 45.64 C
ATOM 22 N3 A B1233 4.174 85.262 70.592 1.00 45.28 N
ATOM 23 C4 A B1233 5.432 84.842 70.378 1.00 45.92 C
ATOM 24 P C B1234 5.417 79.999 66.417 1.00 48.85 P
ATOM 25 OP1 C B1234 4.960 78.791 65.697 1.00 48.85 O
ATOM 26 OP2 C B1234 6.852 80.377 66.364 1.00 50.82 O
ATOM 27 O5' C B1234 4.556 81.250 65.937 1.00 46.08 O
TER
ATOM 2 P C A1234 5.417 79.999 66.417 1.00 48.85 P
ATOM 3 OP1 C A1234 4.960 78.791 65.697 1.00 48.85 O
ATOM 4 OP2 C A1234 6.852 80.377 66.364 1.00 50.82 O
ATOM 5 O5' C A1234 4.556 81.250 65.937 1.00 46.08 O
ATOM 6 C5' C A1234 3.129 81.203 65.987 1.00 45.89 C
ATOM 7 C4' C A1234 2.540 82.547 65.652 1.00 46.88 C
ATOM 8 O4' C A1234 2.814 83.486 66.716 1.00 47.10 O
ATOM 9 C3' C A1234 3.099 83.230 64.423 1.00 47.61 C
ATOM 10 O3' C A1234 2.561 82.711 63.224 1.00 50.37 O
ATOM 11 C2' C A1234 2.710 84.677 64.667 1.00 46.85 C
ATOM 12 O2' C A1234 1.356 84.930 64.376 1.00 46.80 O
ATOM 13 C1' C A1234 2.947 84.789 66.173 1.00 47.00 C
ATOM 14 N1 C A1234 4.303 85.283 66.465 1.00 48.14 N
ATOM 15 C2 C A1234 4.500 86.661 66.587 1.00 49.44 C
ATOM 16 O2 C A1234 3.515 87.421 66.530 1.00 51.45 O
ATOM 17 N3 C A1234 5.753 87.134 66.772 1.00 49.06 N
ATOM 18 C4 C A1234 6.777 86.288 66.861 1.00 48.13 C
ATOM 19 N4 C A1234 7.991 86.801 67.024 1.00 49.19 N
ATOM 20 C5 C A1234 6.599 84.877 66.782 1.00 48.03 C
ATOM 21 C6 C A1234 5.359 84.422 66.587 1.00 47.59 C
ATOM 22 P U A1235 3.514 82.555 61.948 1.00 53.03 P
ATOM 23 OP1 U A1235 2.699 82.153 60.780 1.00 53.83 O
ATOM 24 OP2 U A1235 4.677 81.726 62.351 1.00 52.07 O
ATOM 25 O5' U A1235 4.018 84.041 61.706 1.00 54.49 O
TER
ATOM 1 O3' C B1232 10.186 79.493 71.131 1.00 47.46 O
ATOM 2 P A B1233 9.672 79.584 69.615 1.00 47.74 P
ATOM 3 OP1 A B1233 9.580 78.179 69.159 1.00 49.00 O
ATOM 4 OP2 A B1233 10.491 80.544 68.845 1.00 47.41 O
ATOM 5 O5' A B1233 8.207 80.196 69.749 1.00 45.75 O
ATOM 6 C5' A B1233 7.139 79.417 70.307 1.00 43.99 C
ATOM 7 C4' A B1233 5.835 80.172 70.234 1.00 44.52 C
ATOM 8 O4' A B1233 5.876 81.319 71.118 1.00 45.60 O
ATOM 9 C3' A B1233 5.477 80.787 68.898 1.00 45.57 C
ATOM 10 O3' A B1233 5.006 79.839 67.960 1.00 47.22 O
ATOM 11 C2' A B1233 4.441 81.828 69.300 1.00 45.90 C
ATOM 12 O2' A B1233 3.167 81.294 69.602 1.00 45.03 O
ATOM 13 C1' A B1233 5.058 82.357 70.592 1.00 45.79 C
ATOM 14 N9 A B1233 5.885 83.545 70.369 1.00 46.43 N
ATOM 15 C8 A B1233 7.235 83.623 70.109 1.00 46.36 C
ATOM 16 N7 A B1233 7.673 84.848 69.951 1.00 46.08 N
ATOM 17 C5 A B1233 6.537 85.631 70.118 1.00 46.34 C
ATOM 18 C6 A B1233 6.328 87.020 70.070 1.00 46.09 C
ATOM 19 N6 A B1233 7.292 87.907 69.820 1.00 46.43 N
ATOM 20 N1 A B1233 5.075 87.473 70.284 1.00 45.88 N
ATOM 21 C2 A B1233 4.104 86.586 70.524 1.00 45.64 C
ATOM 22 N3 A B1233 4.174 85.262 70.592 1.00 45.28 N
ATOM 23 C4 A B1233 5.432 84.842 70.378 1.00 45.92 C
ATOM 24 P C B1234 5.417 79.999 66.417 1.00 48.85 P
ATOM 25 OP1 C B1234 4.960 78.791 65.697 1.00 48.85 O
ATOM 26 OP2 C B1234 6.852 80.377 66.364 1.00 50.82 O
ATOM 27 O5' C B1234 4.556 81.250 65.937 1.00 46.08 O
TER
Atoms:
C2: (4.500,86.661,66.587)
OP1: (4.960,78.791,65.697)
OP2: (6.852,80.377,66.364)
C4: (6.777,86.288,66.861)
O5': (4.556,81.250,65.937)
C3': (3.099,83.230,64.423)
C1': (2.947,84.789,66.173)
O4': (2.814,83.486,66.716)
C5': (3.129,81.203,65.987)
P: (5.417,79.999,66.417)
O2: (3.515,87.421,66.530)
C4': (2.540,82.547,65.652)
C2': (2.710,84.677,64.667)
O2': (1.356,84.930,64.376)
N1: (4.303,85.283,66.465)
N3: (5.753,87.134,66.772)
N4: (7.991,86.801,67.024)
C6: (5.359,84.422,66.587)
C5: (6.599,84.877,66.782)
O3': (2.561,82.711,63.224)
OP1: (4.960,78.791,65.697)
OP2: (6.852,80.377,66.364)
C4: (6.777,86.288,66.861)
O5': (4.556,81.250,65.937)
C3': (3.099,83.230,64.423)
C1': (2.947,84.789,66.173)
O4': (2.814,83.486,66.716)
C5': (3.129,81.203,65.987)
P: (5.417,79.999,66.417)
O2: (3.515,87.421,66.530)
C4': (2.540,82.547,65.652)
C2': (2.710,84.677,64.667)
O2': (1.356,84.930,64.376)
N1: (4.303,85.283,66.465)
N3: (5.753,87.134,66.772)
N4: (7.991,86.801,67.024)
C6: (5.359,84.422,66.587)
C5: (6.599,84.877,66.782)
O3': (2.561,82.711,63.224)
OP1: (9.580,78.179,69.159)
OP2: (10.491,80.544,68.845)
C3': (5.477,80.787,68.898)
C1': (5.058,82.357,70.592)
C5': (7.139,79.417,70.307)
O4': (5.876,81.319,71.118)
C8: (7.235,83.623,70.109)
O2': (3.167,81.294,69.602)
C6: (6.328,87.020,70.070)
C5: (6.537,85.631,70.118)
C4: (5.432,84.842,70.378)
P: (9.672,79.584,69.615)
C4': (5.835,80.172,70.234)
C2': (4.441,81.828,69.300)
C2: (4.104,86.586,70.524)
N1: (5.075,87.473,70.284)
N3: (4.174,85.262,70.592)
N6: (7.292,87.907,69.820)
N7: (7.673,84.848,69.951)
N9: (5.885,83.545,70.369)
O5': (8.207,80.196,69.749)
O3': (5.006,79.839,67.960)
OP2: (10.491,80.544,68.845)
C3': (5.477,80.787,68.898)
C1': (5.058,82.357,70.592)
C5': (7.139,79.417,70.307)
O4': (5.876,81.319,71.118)
C8: (7.235,83.623,70.109)
O2': (3.167,81.294,69.602)
C6: (6.328,87.020,70.070)
C5: (6.537,85.631,70.118)
C4: (5.432,84.842,70.378)
P: (9.672,79.584,69.615)
C4': (5.835,80.172,70.234)
C2': (4.441,81.828,69.300)
C2: (4.104,86.586,70.524)
N1: (5.075,87.473,70.284)
N3: (4.174,85.262,70.592)
N6: (7.292,87.907,69.820)
N7: (7.673,84.848,69.951)
N9: (5.885,83.545,70.369)
O5': (8.207,80.196,69.749)
O3': (5.006,79.839,67.960)
Image (generated by PyMOL):