Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:C4:C3
Extra
PDB:
ATOM 1 O3' A A 3 -21.709 -33.893 25.875 1.00 36.93 O
ATOM 2 P C A 4 -21.577 -34.527 24.417 1.00 37.14 P
ATOM 3 OP1 C A 4 -20.232 -34.136 23.921 1.00 38.82 O
ATOM 4 OP2 C A 4 -22.787 -34.198 23.613 1.00 38.83 O
ATOM 5 O5' C A 4 -21.586 -36.080 24.747 1.00 34.48 O
ATOM 6 C5' C A 4 -22.093 -37.033 23.837 1.00 31.47 C
ATOM 7 C4' C A 4 -22.192 -38.355 24.531 1.00 30.14 C
ATOM 8 O4' C A 4 -23.330 -38.344 25.419 1.00 29.13 O
ATOM 9 C3' C A 4 -22.445 -39.554 23.643 1.00 30.64 C
ATOM 10 O3' C A 4 -21.235 -39.975 23.050 1.00 32.03 O
ATOM 11 C2' C A 4 -22.987 -40.566 24.635 1.00 29.77 C
ATOM 12 O2' C A 4 -21.961 -41.119 25.435 1.00 29.59 O
ATOM 13 C1' C A 4 -23.853 -39.661 25.514 1.00 28.78 C
ATOM 14 N1 C A 4 -25.261 -39.640 25.102 1.00 26.76 N
ATOM 15 C2 C A 4 -25.978 -40.826 25.152 1.00 26.50 C
ATOM 16 O2 C A 4 -25.402 -41.852 25.530 1.00 27.86 O
ATOM 17 N3 C A 4 -27.279 -40.830 24.792 1.00 26.57 N
ATOM 18 C4 C A 4 -27.864 -39.701 24.398 1.00 26.43 C
ATOM 19 N4 C A 4 -29.149 -39.752 24.064 1.00 27.23 N
ATOM 20 C5 C A 4 -27.154 -38.470 24.331 1.00 27.58 C
ATOM 21 C6 C A 4 -25.863 -38.485 24.687 1.00 28.78 C
ATOM 22 P C A 5 -21.186 -40.207 21.471 1.00 33.64 P
ATOM 23 OP1 C A 5 -19.776 -40.115 21.019 1.00 32.11 O
ATOM 24 OP2 C A 5 -22.209 -39.290 20.897 1.00 33.53 O
ATOM 25 O5' C A 5 -21.675 -41.713 21.321 1.00 31.18 O
TER
ATOM 1 O3' A B 2 -25.581 -29.961 27.977 1.00 28.31 O
ATOM 2 P A B 3 -25.326 -30.503 26.495 1.00 24.63 P
ATOM 3 OP1 A B 3 -24.414 -29.552 25.819 1.00 26.90 O
ATOM 4 OP2 A B 3 -26.666 -30.767 25.926 1.00 27.07 O
ATOM 5 O5' A B 3 -24.537 -31.863 26.742 1.00 26.15 O
ATOM 6 C5' A B 3 -23.398 -31.865 27.607 1.00 32.20 C
ATOM 7 C4' A B 3 -22.909 -33.275 27.875 1.00 34.17 C
ATOM 8 O4' A B 3 -23.756 -33.973 28.821 1.00 33.35 O
ATOM 9 C3' A B 3 -22.851 -34.192 26.667 1.00 35.23 C
ATOM 10 O3' A B 3 -21.709 -33.893 25.875 1.00 36.93 O
ATOM 11 C2' A B 3 -22.859 -35.574 27.315 1.00 34.17 C
ATOM 12 O2' A B 3 -21.630 -35.964 27.887 1.00 34.61 O
ATOM 13 C1' A B 3 -23.843 -35.345 28.459 1.00 32.85 C
ATOM 14 N9 A B 3 -25.207 -35.583 28.014 1.00 30.40 N
ATOM 15 C8 A B 3 -26.057 -34.663 27.460 1.00 31.69 C
ATOM 16 N7 A B 3 -27.225 -35.151 27.134 1.00 33.43 N
ATOM 17 C5 A B 3 -27.139 -36.483 27.500 1.00 30.72 C
ATOM 18 C6 A B 3 -28.047 -37.534 27.404 1.00 29.97 C
ATOM 19 N6 A B 3 -29.268 -37.401 26.878 1.00 28.60 N
ATOM 20 N1 A B 3 -27.655 -38.743 27.864 1.00 29.39 N
ATOM 21 C2 A B 3 -26.419 -38.867 28.376 1.00 29.02 C
ATOM 22 N3 A B 3 -25.469 -37.946 28.512 1.00 27.48 N
ATOM 23 C4 A B 3 -25.900 -36.763 28.048 1.00 29.49 C
ATOM 24 P C B 4 -21.577 -34.527 24.417 1.00 37.14 P
ATOM 25 OP1 C B 4 -20.232 -34.136 23.921 1.00 38.82 O
ATOM 26 OP2 C B 4 -22.787 -34.198 23.613 1.00 38.83 O
ATOM 27 O5' C B 4 -21.586 -36.080 24.747 1.00 34.48 O
TER
ATOM 2 P C A 4 -21.577 -34.527 24.417 1.00 37.14 P
ATOM 3 OP1 C A 4 -20.232 -34.136 23.921 1.00 38.82 O
ATOM 4 OP2 C A 4 -22.787 -34.198 23.613 1.00 38.83 O
ATOM 5 O5' C A 4 -21.586 -36.080 24.747 1.00 34.48 O
ATOM 6 C5' C A 4 -22.093 -37.033 23.837 1.00 31.47 C
ATOM 7 C4' C A 4 -22.192 -38.355 24.531 1.00 30.14 C
ATOM 8 O4' C A 4 -23.330 -38.344 25.419 1.00 29.13 O
ATOM 9 C3' C A 4 -22.445 -39.554 23.643 1.00 30.64 C
ATOM 10 O3' C A 4 -21.235 -39.975 23.050 1.00 32.03 O
ATOM 11 C2' C A 4 -22.987 -40.566 24.635 1.00 29.77 C
ATOM 12 O2' C A 4 -21.961 -41.119 25.435 1.00 29.59 O
ATOM 13 C1' C A 4 -23.853 -39.661 25.514 1.00 28.78 C
ATOM 14 N1 C A 4 -25.261 -39.640 25.102 1.00 26.76 N
ATOM 15 C2 C A 4 -25.978 -40.826 25.152 1.00 26.50 C
ATOM 16 O2 C A 4 -25.402 -41.852 25.530 1.00 27.86 O
ATOM 17 N3 C A 4 -27.279 -40.830 24.792 1.00 26.57 N
ATOM 18 C4 C A 4 -27.864 -39.701 24.398 1.00 26.43 C
ATOM 19 N4 C A 4 -29.149 -39.752 24.064 1.00 27.23 N
ATOM 20 C5 C A 4 -27.154 -38.470 24.331 1.00 27.58 C
ATOM 21 C6 C A 4 -25.863 -38.485 24.687 1.00 28.78 C
ATOM 22 P C A 5 -21.186 -40.207 21.471 1.00 33.64 P
ATOM 23 OP1 C A 5 -19.776 -40.115 21.019 1.00 32.11 O
ATOM 24 OP2 C A 5 -22.209 -39.290 20.897 1.00 33.53 O
ATOM 25 O5' C A 5 -21.675 -41.713 21.321 1.00 31.18 O
TER
ATOM 1 O3' A B 2 -25.581 -29.961 27.977 1.00 28.31 O
ATOM 2 P A B 3 -25.326 -30.503 26.495 1.00 24.63 P
ATOM 3 OP1 A B 3 -24.414 -29.552 25.819 1.00 26.90 O
ATOM 4 OP2 A B 3 -26.666 -30.767 25.926 1.00 27.07 O
ATOM 5 O5' A B 3 -24.537 -31.863 26.742 1.00 26.15 O
ATOM 6 C5' A B 3 -23.398 -31.865 27.607 1.00 32.20 C
ATOM 7 C4' A B 3 -22.909 -33.275 27.875 1.00 34.17 C
ATOM 8 O4' A B 3 -23.756 -33.973 28.821 1.00 33.35 O
ATOM 9 C3' A B 3 -22.851 -34.192 26.667 1.00 35.23 C
ATOM 10 O3' A B 3 -21.709 -33.893 25.875 1.00 36.93 O
ATOM 11 C2' A B 3 -22.859 -35.574 27.315 1.00 34.17 C
ATOM 12 O2' A B 3 -21.630 -35.964 27.887 1.00 34.61 O
ATOM 13 C1' A B 3 -23.843 -35.345 28.459 1.00 32.85 C
ATOM 14 N9 A B 3 -25.207 -35.583 28.014 1.00 30.40 N
ATOM 15 C8 A B 3 -26.057 -34.663 27.460 1.00 31.69 C
ATOM 16 N7 A B 3 -27.225 -35.151 27.134 1.00 33.43 N
ATOM 17 C5 A B 3 -27.139 -36.483 27.500 1.00 30.72 C
ATOM 18 C6 A B 3 -28.047 -37.534 27.404 1.00 29.97 C
ATOM 19 N6 A B 3 -29.268 -37.401 26.878 1.00 28.60 N
ATOM 20 N1 A B 3 -27.655 -38.743 27.864 1.00 29.39 N
ATOM 21 C2 A B 3 -26.419 -38.867 28.376 1.00 29.02 C
ATOM 22 N3 A B 3 -25.469 -37.946 28.512 1.00 27.48 N
ATOM 23 C4 A B 3 -25.900 -36.763 28.048 1.00 29.49 C
ATOM 24 P C B 4 -21.577 -34.527 24.417 1.00 37.14 P
ATOM 25 OP1 C B 4 -20.232 -34.136 23.921 1.00 38.82 O
ATOM 26 OP2 C B 4 -22.787 -34.198 23.613 1.00 38.83 O
ATOM 27 O5' C B 4 -21.586 -36.080 24.747 1.00 34.48 O
TER
Atoms:
C2: (-25.978,-40.826,25.152)
OP1: (-20.232,-34.136,23.921)
OP2: (-22.787,-34.198,23.613)
C4: (-27.864,-39.701,24.398)
O5': (-21.586,-36.080,24.747)
C3': (-22.445,-39.554,23.643)
C1': (-23.853,-39.661,25.514)
O4': (-23.330,-38.344,25.419)
C5': (-22.093,-37.033,23.837)
P: (-21.577,-34.527,24.417)
O2: (-25.402,-41.852,25.530)
C4': (-22.192,-38.355,24.531)
C2': (-22.987,-40.566,24.635)
O2': (-21.961,-41.119,25.435)
N1: (-25.261,-39.640,25.102)
N3: (-27.279,-40.830,24.792)
N4: (-29.149,-39.752,24.064)
C6: (-25.863,-38.485,24.687)
C5: (-27.154,-38.470,24.331)
O3': (-21.235,-39.975,23.050)
OP1: (-20.232,-34.136,23.921)
OP2: (-22.787,-34.198,23.613)
C4: (-27.864,-39.701,24.398)
O5': (-21.586,-36.080,24.747)
C3': (-22.445,-39.554,23.643)
C1': (-23.853,-39.661,25.514)
O4': (-23.330,-38.344,25.419)
C5': (-22.093,-37.033,23.837)
P: (-21.577,-34.527,24.417)
O2: (-25.402,-41.852,25.530)
C4': (-22.192,-38.355,24.531)
C2': (-22.987,-40.566,24.635)
O2': (-21.961,-41.119,25.435)
N1: (-25.261,-39.640,25.102)
N3: (-27.279,-40.830,24.792)
N4: (-29.149,-39.752,24.064)
C6: (-25.863,-38.485,24.687)
C5: (-27.154,-38.470,24.331)
O3': (-21.235,-39.975,23.050)
OP1: (-24.414,-29.552,25.819)
OP2: (-26.666,-30.767,25.926)
C3': (-22.851,-34.192,26.667)
C1': (-23.843,-35.345,28.459)
C5': (-23.398,-31.865,27.607)
O4': (-23.756,-33.973,28.821)
C8: (-26.057,-34.663,27.460)
O2': (-21.630,-35.964,27.887)
C6: (-28.047,-37.534,27.404)
C5: (-27.139,-36.483,27.500)
C4: (-25.900,-36.763,28.048)
P: (-25.326,-30.503,26.495)
C4': (-22.909,-33.275,27.875)
C2': (-22.859,-35.574,27.315)
C2: (-26.419,-38.867,28.376)
N1: (-27.655,-38.743,27.864)
N3: (-25.469,-37.946,28.512)
N6: (-29.268,-37.401,26.878)
N7: (-27.225,-35.151,27.134)
N9: (-25.207,-35.583,28.014)
O5': (-24.537,-31.863,26.742)
O3': (-21.709,-33.893,25.875)
OP2: (-26.666,-30.767,25.926)
C3': (-22.851,-34.192,26.667)
C1': (-23.843,-35.345,28.459)
C5': (-23.398,-31.865,27.607)
O4': (-23.756,-33.973,28.821)
C8: (-26.057,-34.663,27.460)
O2': (-21.630,-35.964,27.887)
C6: (-28.047,-37.534,27.404)
C5: (-27.139,-36.483,27.500)
C4: (-25.900,-36.763,28.048)
P: (-25.326,-30.503,26.495)
C4': (-22.909,-33.275,27.875)
C2': (-22.859,-35.574,27.315)
C2: (-26.419,-38.867,28.376)
N1: (-27.655,-38.743,27.864)
N3: (-25.469,-37.946,28.512)
N6: (-29.268,-37.401,26.878)
N7: (-27.225,-35.151,27.134)
N9: (-25.207,-35.583,28.014)
O5': (-24.537,-31.863,26.742)
O3': (-21.709,-33.893,25.875)
Image (generated by PyMOL):