Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YHQ:01234:01233
Extra
PDB:
ATOM 1 O3' A A1233 4.980 79.305 68.105 1.00 42.22 O
ATOM 2 P C A1234 5.310 79.444 66.542 1.00 44.35 P
ATOM 3 OP1 C A1234 4.701 78.263 65.873 1.00 44.91 O
ATOM 4 OP2 C A1234 6.765 79.698 66.385 1.00 43.95 O
ATOM 5 O5' C A1234 4.512 80.754 66.106 1.00 41.97 O
ATOM 6 C5' C A1234 3.081 80.771 66.123 1.00 42.39 C
ATOM 7 C4' C A1234 2.554 82.152 65.807 1.00 44.95 C
ATOM 8 O4' C A1234 2.877 83.080 66.877 1.00 46.07 O
ATOM 9 C3' C A1234 3.108 82.834 64.573 1.00 45.34 C
ATOM 10 O3' C A1234 2.533 82.338 63.376 1.00 46.88 O
ATOM 11 C2' C A1234 2.734 84.284 64.834 1.00 46.00 C
ATOM 12 O2' C A1234 1.377 84.559 64.567 1.00 47.45 O
ATOM 13 C1' C A1234 2.992 84.390 66.340 1.00 45.99 C
ATOM 14 N1 C A1234 4.346 84.905 66.608 1.00 46.95 N
ATOM 15 C2 C A1234 4.545 86.292 66.638 1.00 48.70 C
ATOM 16 O2 C A1234 3.562 87.048 66.521 1.00 50.61 O
ATOM 17 N3 C A1234 5.796 86.776 66.799 1.00 48.48 N
ATOM 18 C4 C A1234 6.821 85.937 66.946 1.00 48.48 C
ATOM 19 N4 C A1234 8.037 86.461 67.079 1.00 49.49 N
ATOM 20 C5 C A1234 6.644 84.524 66.959 1.00 47.87 C
ATOM 21 C6 C A1234 5.403 84.055 66.791 1.00 47.14 C
ATOM 22 P U A1235 3.468 82.091 62.096 1.00 50.07 P
ATOM 23 OP1 U A1235 2.632 81.599 60.970 1.00 49.38 O
ATOM 24 OP2 U A1235 4.630 81.284 62.548 1.00 47.67 O
ATOM 25 O5' U A1235 3.974 83.557 61.734 1.00 49.19 O
TER
ATOM 1 O3' C B1232 10.180 79.073 71.227 1.00 43.98 O
ATOM 2 P A B1233 9.653 79.179 69.715 1.00 45.68 P
ATOM 3 OP1 A B1233 9.570 77.786 69.214 1.00 44.97 O
ATOM 4 OP2 A B1233 10.458 80.176 68.966 1.00 45.70 O
ATOM 5 O5' A B1233 8.180 79.765 69.873 1.00 45.05 O
ATOM 6 C5' A B1233 7.129 78.965 70.441 1.00 42.92 C
ATOM 7 C4' A B1233 5.810 79.690 70.355 1.00 42.75 C
ATOM 8 O4' A B1233 5.807 80.838 71.239 1.00 42.70 O
ATOM 9 C3' A B1233 5.454 80.286 69.007 1.00 42.59 C
ATOM 10 O3' A B1233 4.980 79.305 68.105 1.00 42.22 O
ATOM 11 C2' A B1233 4.391 81.303 69.393 1.00 43.32 C
ATOM 12 O2' A B1233 3.144 80.715 69.694 1.00 42.94 O
ATOM 13 C1' A B1233 4.981 81.856 70.690 1.00 44.70 C
ATOM 14 N9 A B1233 5.796 83.053 70.469 1.00 46.34 N
ATOM 15 C8 A B1233 7.156 83.138 70.276 1.00 47.35 C
ATOM 16 N7 A B1233 7.591 84.364 70.112 1.00 47.66 N
ATOM 17 C5 A B1233 6.443 85.139 70.199 1.00 46.80 C
ATOM 18 C6 A B1233 6.228 86.525 70.103 1.00 46.94 C
ATOM 19 N6 A B1233 7.200 87.413 69.890 1.00 46.49 N
ATOM 20 N1 A B1233 4.961 86.974 70.232 1.00 46.90 N
ATOM 21 C2 A B1233 3.984 86.084 70.439 1.00 46.59 C
ATOM 22 N3 A B1233 4.059 84.759 70.546 1.00 46.26 N
ATOM 23 C4 A B1233 5.330 84.345 70.416 1.00 46.16 C
ATOM 24 P C B1234 5.310 79.444 66.542 1.00 44.35 P
ATOM 25 OP1 C B1234 4.701 78.263 65.873 1.00 44.91 O
ATOM 26 OP2 C B1234 6.765 79.698 66.385 1.00 43.95 O
ATOM 27 O5' C B1234 4.512 80.754 66.106 1.00 41.97 O
TER
ATOM 2 P C A1234 5.310 79.444 66.542 1.00 44.35 P
ATOM 3 OP1 C A1234 4.701 78.263 65.873 1.00 44.91 O
ATOM 4 OP2 C A1234 6.765 79.698 66.385 1.00 43.95 O
ATOM 5 O5' C A1234 4.512 80.754 66.106 1.00 41.97 O
ATOM 6 C5' C A1234 3.081 80.771 66.123 1.00 42.39 C
ATOM 7 C4' C A1234 2.554 82.152 65.807 1.00 44.95 C
ATOM 8 O4' C A1234 2.877 83.080 66.877 1.00 46.07 O
ATOM 9 C3' C A1234 3.108 82.834 64.573 1.00 45.34 C
ATOM 10 O3' C A1234 2.533 82.338 63.376 1.00 46.88 O
ATOM 11 C2' C A1234 2.734 84.284 64.834 1.00 46.00 C
ATOM 12 O2' C A1234 1.377 84.559 64.567 1.00 47.45 O
ATOM 13 C1' C A1234 2.992 84.390 66.340 1.00 45.99 C
ATOM 14 N1 C A1234 4.346 84.905 66.608 1.00 46.95 N
ATOM 15 C2 C A1234 4.545 86.292 66.638 1.00 48.70 C
ATOM 16 O2 C A1234 3.562 87.048 66.521 1.00 50.61 O
ATOM 17 N3 C A1234 5.796 86.776 66.799 1.00 48.48 N
ATOM 18 C4 C A1234 6.821 85.937 66.946 1.00 48.48 C
ATOM 19 N4 C A1234 8.037 86.461 67.079 1.00 49.49 N
ATOM 20 C5 C A1234 6.644 84.524 66.959 1.00 47.87 C
ATOM 21 C6 C A1234 5.403 84.055 66.791 1.00 47.14 C
ATOM 22 P U A1235 3.468 82.091 62.096 1.00 50.07 P
ATOM 23 OP1 U A1235 2.632 81.599 60.970 1.00 49.38 O
ATOM 24 OP2 U A1235 4.630 81.284 62.548 1.00 47.67 O
ATOM 25 O5' U A1235 3.974 83.557 61.734 1.00 49.19 O
TER
ATOM 1 O3' C B1232 10.180 79.073 71.227 1.00 43.98 O
ATOM 2 P A B1233 9.653 79.179 69.715 1.00 45.68 P
ATOM 3 OP1 A B1233 9.570 77.786 69.214 1.00 44.97 O
ATOM 4 OP2 A B1233 10.458 80.176 68.966 1.00 45.70 O
ATOM 5 O5' A B1233 8.180 79.765 69.873 1.00 45.05 O
ATOM 6 C5' A B1233 7.129 78.965 70.441 1.00 42.92 C
ATOM 7 C4' A B1233 5.810 79.690 70.355 1.00 42.75 C
ATOM 8 O4' A B1233 5.807 80.838 71.239 1.00 42.70 O
ATOM 9 C3' A B1233 5.454 80.286 69.007 1.00 42.59 C
ATOM 10 O3' A B1233 4.980 79.305 68.105 1.00 42.22 O
ATOM 11 C2' A B1233 4.391 81.303 69.393 1.00 43.32 C
ATOM 12 O2' A B1233 3.144 80.715 69.694 1.00 42.94 O
ATOM 13 C1' A B1233 4.981 81.856 70.690 1.00 44.70 C
ATOM 14 N9 A B1233 5.796 83.053 70.469 1.00 46.34 N
ATOM 15 C8 A B1233 7.156 83.138 70.276 1.00 47.35 C
ATOM 16 N7 A B1233 7.591 84.364 70.112 1.00 47.66 N
ATOM 17 C5 A B1233 6.443 85.139 70.199 1.00 46.80 C
ATOM 18 C6 A B1233 6.228 86.525 70.103 1.00 46.94 C
ATOM 19 N6 A B1233 7.200 87.413 69.890 1.00 46.49 N
ATOM 20 N1 A B1233 4.961 86.974 70.232 1.00 46.90 N
ATOM 21 C2 A B1233 3.984 86.084 70.439 1.00 46.59 C
ATOM 22 N3 A B1233 4.059 84.759 70.546 1.00 46.26 N
ATOM 23 C4 A B1233 5.330 84.345 70.416 1.00 46.16 C
ATOM 24 P C B1234 5.310 79.444 66.542 1.00 44.35 P
ATOM 25 OP1 C B1234 4.701 78.263 65.873 1.00 44.91 O
ATOM 26 OP2 C B1234 6.765 79.698 66.385 1.00 43.95 O
ATOM 27 O5' C B1234 4.512 80.754 66.106 1.00 41.97 O
TER
Atoms:
C2: (4.545,86.292,66.638)
OP1: (4.701,78.263,65.873)
OP2: (6.765,79.698,66.385)
C4: (6.821,85.937,66.946)
O5': (4.512,80.754,66.106)
C3': (3.108,82.834,64.573)
C1': (2.992,84.390,66.340)
O4': (2.877,83.080,66.877)
C5': (3.081,80.771,66.123)
P: (5.310,79.444,66.542)
O2: (3.562,87.048,66.521)
C4': (2.554,82.152,65.807)
C2': (2.734,84.284,64.834)
O2': (1.377,84.559,64.567)
N1: (4.346,84.905,66.608)
N3: (5.796,86.776,66.799)
N4: (8.037,86.461,67.079)
C6: (5.403,84.055,66.791)
C5: (6.644,84.524,66.959)
O3': (2.533,82.338,63.376)
OP1: (4.701,78.263,65.873)
OP2: (6.765,79.698,66.385)
C4: (6.821,85.937,66.946)
O5': (4.512,80.754,66.106)
C3': (3.108,82.834,64.573)
C1': (2.992,84.390,66.340)
O4': (2.877,83.080,66.877)
C5': (3.081,80.771,66.123)
P: (5.310,79.444,66.542)
O2: (3.562,87.048,66.521)
C4': (2.554,82.152,65.807)
C2': (2.734,84.284,64.834)
O2': (1.377,84.559,64.567)
N1: (4.346,84.905,66.608)
N3: (5.796,86.776,66.799)
N4: (8.037,86.461,67.079)
C6: (5.403,84.055,66.791)
C5: (6.644,84.524,66.959)
O3': (2.533,82.338,63.376)
OP1: (9.570,77.786,69.214)
OP2: (10.458,80.176,68.966)
C3': (5.454,80.286,69.007)
C1': (4.981,81.856,70.690)
C5': (7.129,78.965,70.441)
O4': (5.807,80.838,71.239)
C8: (7.156,83.138,70.276)
O2': (3.144,80.715,69.694)
C6: (6.228,86.525,70.103)
C5: (6.443,85.139,70.199)
C4: (5.330,84.345,70.416)
P: (9.653,79.179,69.715)
C4': (5.810,79.690,70.355)
C2': (4.391,81.303,69.393)
C2: (3.984,86.084,70.439)
N1: (4.961,86.974,70.232)
N3: (4.059,84.759,70.546)
N6: (7.200,87.413,69.890)
N7: (7.591,84.364,70.112)
N9: (5.796,83.053,70.469)
O5': (8.180,79.765,69.873)
O3': (4.980,79.305,68.105)
OP2: (10.458,80.176,68.966)
C3': (5.454,80.286,69.007)
C1': (4.981,81.856,70.690)
C5': (7.129,78.965,70.441)
O4': (5.807,80.838,71.239)
C8: (7.156,83.138,70.276)
O2': (3.144,80.715,69.694)
C6: (6.228,86.525,70.103)
C5: (6.443,85.139,70.199)
C4: (5.330,84.345,70.416)
P: (9.653,79.179,69.715)
C4': (5.810,79.690,70.355)
C2': (4.391,81.303,69.393)
C2: (3.984,86.084,70.439)
N1: (4.961,86.974,70.232)
N3: (4.059,84.759,70.546)
N6: (7.200,87.413,69.890)
N7: (7.591,84.364,70.112)
N9: (5.796,83.053,70.469)
O5': (8.180,79.765,69.873)
O3': (4.980,79.305,68.105)
Image (generated by PyMOL):