Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12227:12226
Extra
PDB:
ATOM 1 O3' A A2226 16.440 -28.935 86.084 1.00 60.78 O
ATOM 2 P C A2227 16.506 -29.734 87.491 1.00 44.30 P
ATOM 3 OP1 C A2227 15.913 -31.067 87.266 1.00 44.49 O
ATOM 4 OP2 C A2227 15.899 -28.854 88.559 1.00 44.38 O
ATOM 5 O5' C A2227 18.072 -29.897 87.691 1.00 44.19 O
ATOM 6 C5' C A2227 18.841 -30.478 86.647 1.00 44.08 C
ATOM 7 C4' C A2227 20.313 -30.413 86.905 1.00 43.98 C
ATOM 8 O4' C A2227 20.808 -29.096 86.620 1.00 43.76 O
ATOM 9 C3' C A2227 20.751 -30.687 88.316 1.00 44.14 C
ATOM 10 O3' C A2227 20.862 -32.056 88.549 1.00 44.34 O
ATOM 11 C2' C A2227 22.082 -29.994 88.372 1.00 43.97 C
ATOM 12 O2' C A2227 23.051 -30.772 87.694 1.00 43.92 O
ATOM 13 C1' C A2227 21.809 -28.755 87.540 1.00 43.75 C
ATOM 14 N1 C A2227 21.315 -27.622 88.362 1.00 43.76 N
ATOM 15 C2 C A2227 22.246 -26.793 88.995 1.00 43.69 C
ATOM 16 O2 C A2227 23.425 -27.090 88.850 1.00 43.62 O
ATOM 17 N3 C A2227 21.816 -25.735 89.736 1.00 43.72 N
ATOM 18 C4 C A2227 20.505 -25.520 89.832 1.00 43.81 C
ATOM 19 N4 C A2227 20.087 -24.505 90.547 1.00 43.85 N
ATOM 20 C5 C A2227 19.537 -26.334 89.198 1.00 43.88 C
ATOM 21 C6 C A2227 19.972 -27.362 88.481 1.00 43.85 C
ATOM 22 P U A2228 20.491 -32.684 89.971 1.00 44.64 P
ATOM 23 OP1 U A2228 20.766 -34.164 89.863 1.00 44.81 O
ATOM 24 OP2 U A2228 19.112 -32.221 90.324 1.00 44.73 O
ATOM 25 O5' U A2228 21.571 -32.006 90.934 1.00 44.60 O
TER
ATOM 1 O3' G B2225 11.936 -26.065 87.134 1.00 62.10 O
ATOM 2 P A B2226 13.400 -25.381 87.575 1.00 60.91 P
ATOM 3 OP1 A B2226 13.571 -25.444 89.110 1.00 61.08 O
ATOM 4 OP2 A B2226 13.489 -24.028 86.888 1.00 60.71 O
ATOM 5 O5' A B2226 14.427 -26.386 86.877 1.00 60.81 O
ATOM 6 C5' A B2226 14.396 -26.582 85.493 1.00 60.69 C
ATOM 7 C4' A B2226 15.747 -26.871 85.005 1.00 60.53 C
ATOM 8 O4' A B2226 16.396 -25.632 84.701 1.00 60.32 O
ATOM 9 C3' A B2226 16.651 -27.530 86.010 1.00 60.61 C
ATOM 10 O3' A B2226 16.440 -28.935 86.084 1.00 60.78 O
ATOM 11 C2' A B2226 18.037 -27.120 85.512 1.00 60.38 C
ATOM 12 O2' A B2226 18.450 -27.943 84.426 1.00 60.32 O
ATOM 13 C1' A B2226 17.760 -25.721 84.959 1.00 60.22 C
ATOM 14 N9 A B2226 18.105 -24.645 85.884 1.00 60.19 N
ATOM 15 C8 A B2226 17.270 -23.724 86.415 1.00 60.25 C
ATOM 16 N7 A B2226 17.853 -22.871 87.191 1.00 60.21 N
ATOM 17 C5 A B2226 19.167 -23.269 87.133 1.00 60.12 C
ATOM 18 C6 A B2226 20.323 -22.787 87.725 1.00 60.06 C
ATOM 19 N6 A B2226 20.398 -21.756 88.545 1.00 60.08 N
ATOM 20 N1 A B2226 21.449 -23.424 87.429 1.00 59.98 N
ATOM 21 C2 A B2226 21.421 -24.473 86.618 1.00 59.98 C
ATOM 22 N3 A B2226 20.403 -25.032 86.014 1.00 60.04 N
ATOM 23 C4 A B2226 19.319 -24.353 86.318 1.00 60.10 C
ATOM 24 P C B2227 16.506 -29.734 87.491 1.00 44.30 P
ATOM 25 OP1 C B2227 15.913 -31.067 87.266 1.00 44.49 O
ATOM 26 OP2 C B2227 15.899 -28.854 88.559 1.00 44.38 O
ATOM 27 O5' C B2227 18.072 -29.897 87.691 1.00 44.19 O
TER
ATOM 2 P C A2227 16.506 -29.734 87.491 1.00 44.30 P
ATOM 3 OP1 C A2227 15.913 -31.067 87.266 1.00 44.49 O
ATOM 4 OP2 C A2227 15.899 -28.854 88.559 1.00 44.38 O
ATOM 5 O5' C A2227 18.072 -29.897 87.691 1.00 44.19 O
ATOM 6 C5' C A2227 18.841 -30.478 86.647 1.00 44.08 C
ATOM 7 C4' C A2227 20.313 -30.413 86.905 1.00 43.98 C
ATOM 8 O4' C A2227 20.808 -29.096 86.620 1.00 43.76 O
ATOM 9 C3' C A2227 20.751 -30.687 88.316 1.00 44.14 C
ATOM 10 O3' C A2227 20.862 -32.056 88.549 1.00 44.34 O
ATOM 11 C2' C A2227 22.082 -29.994 88.372 1.00 43.97 C
ATOM 12 O2' C A2227 23.051 -30.772 87.694 1.00 43.92 O
ATOM 13 C1' C A2227 21.809 -28.755 87.540 1.00 43.75 C
ATOM 14 N1 C A2227 21.315 -27.622 88.362 1.00 43.76 N
ATOM 15 C2 C A2227 22.246 -26.793 88.995 1.00 43.69 C
ATOM 16 O2 C A2227 23.425 -27.090 88.850 1.00 43.62 O
ATOM 17 N3 C A2227 21.816 -25.735 89.736 1.00 43.72 N
ATOM 18 C4 C A2227 20.505 -25.520 89.832 1.00 43.81 C
ATOM 19 N4 C A2227 20.087 -24.505 90.547 1.00 43.85 N
ATOM 20 C5 C A2227 19.537 -26.334 89.198 1.00 43.88 C
ATOM 21 C6 C A2227 19.972 -27.362 88.481 1.00 43.85 C
ATOM 22 P U A2228 20.491 -32.684 89.971 1.00 44.64 P
ATOM 23 OP1 U A2228 20.766 -34.164 89.863 1.00 44.81 O
ATOM 24 OP2 U A2228 19.112 -32.221 90.324 1.00 44.73 O
ATOM 25 O5' U A2228 21.571 -32.006 90.934 1.00 44.60 O
TER
ATOM 1 O3' G B2225 11.936 -26.065 87.134 1.00 62.10 O
ATOM 2 P A B2226 13.400 -25.381 87.575 1.00 60.91 P
ATOM 3 OP1 A B2226 13.571 -25.444 89.110 1.00 61.08 O
ATOM 4 OP2 A B2226 13.489 -24.028 86.888 1.00 60.71 O
ATOM 5 O5' A B2226 14.427 -26.386 86.877 1.00 60.81 O
ATOM 6 C5' A B2226 14.396 -26.582 85.493 1.00 60.69 C
ATOM 7 C4' A B2226 15.747 -26.871 85.005 1.00 60.53 C
ATOM 8 O4' A B2226 16.396 -25.632 84.701 1.00 60.32 O
ATOM 9 C3' A B2226 16.651 -27.530 86.010 1.00 60.61 C
ATOM 10 O3' A B2226 16.440 -28.935 86.084 1.00 60.78 O
ATOM 11 C2' A B2226 18.037 -27.120 85.512 1.00 60.38 C
ATOM 12 O2' A B2226 18.450 -27.943 84.426 1.00 60.32 O
ATOM 13 C1' A B2226 17.760 -25.721 84.959 1.00 60.22 C
ATOM 14 N9 A B2226 18.105 -24.645 85.884 1.00 60.19 N
ATOM 15 C8 A B2226 17.270 -23.724 86.415 1.00 60.25 C
ATOM 16 N7 A B2226 17.853 -22.871 87.191 1.00 60.21 N
ATOM 17 C5 A B2226 19.167 -23.269 87.133 1.00 60.12 C
ATOM 18 C6 A B2226 20.323 -22.787 87.725 1.00 60.06 C
ATOM 19 N6 A B2226 20.398 -21.756 88.545 1.00 60.08 N
ATOM 20 N1 A B2226 21.449 -23.424 87.429 1.00 59.98 N
ATOM 21 C2 A B2226 21.421 -24.473 86.618 1.00 59.98 C
ATOM 22 N3 A B2226 20.403 -25.032 86.014 1.00 60.04 N
ATOM 23 C4 A B2226 19.319 -24.353 86.318 1.00 60.10 C
ATOM 24 P C B2227 16.506 -29.734 87.491 1.00 44.30 P
ATOM 25 OP1 C B2227 15.913 -31.067 87.266 1.00 44.49 O
ATOM 26 OP2 C B2227 15.899 -28.854 88.559 1.00 44.38 O
ATOM 27 O5' C B2227 18.072 -29.897 87.691 1.00 44.19 O
TER
Atoms:
C2: (22.246,-26.793,88.995)
OP1: (15.913,-31.067,87.266)
OP2: (15.899,-28.854,88.559)
C4: (20.505,-25.520,89.832)
O5': (18.072,-29.897,87.691)
C3': (20.751,-30.687,88.316)
C1': (21.809,-28.755,87.540)
O4': (20.808,-29.096,86.620)
C5': (18.841,-30.478,86.647)
P: (16.506,-29.734,87.491)
O2: (23.425,-27.090,88.850)
C4': (20.313,-30.413,86.905)
C2': (22.082,-29.994,88.372)
O2': (23.051,-30.772,87.694)
N1: (21.315,-27.622,88.362)
N3: (21.816,-25.735,89.736)
N4: (20.087,-24.505,90.547)
C6: (19.972,-27.362,88.481)
C5: (19.537,-26.334,89.198)
O3': (20.862,-32.056,88.549)
OP1: (15.913,-31.067,87.266)
OP2: (15.899,-28.854,88.559)
C4: (20.505,-25.520,89.832)
O5': (18.072,-29.897,87.691)
C3': (20.751,-30.687,88.316)
C1': (21.809,-28.755,87.540)
O4': (20.808,-29.096,86.620)
C5': (18.841,-30.478,86.647)
P: (16.506,-29.734,87.491)
O2: (23.425,-27.090,88.850)
C4': (20.313,-30.413,86.905)
C2': (22.082,-29.994,88.372)
O2': (23.051,-30.772,87.694)
N1: (21.315,-27.622,88.362)
N3: (21.816,-25.735,89.736)
N4: (20.087,-24.505,90.547)
C6: (19.972,-27.362,88.481)
C5: (19.537,-26.334,89.198)
O3': (20.862,-32.056,88.549)
OP1: (13.571,-25.444,89.110)
OP2: (13.489,-24.028,86.888)
C3': (16.651,-27.530,86.010)
C1': (17.760,-25.721,84.959)
C5': (14.396,-26.582,85.493)
O4': (16.396,-25.632,84.701)
C8: (17.270,-23.724,86.415)
O2': (18.450,-27.943,84.426)
C6: (20.323,-22.787,87.725)
C5: (19.167,-23.269,87.133)
C4: (19.319,-24.353,86.318)
P: (13.400,-25.381,87.575)
C4': (15.747,-26.871,85.005)
C2': (18.037,-27.120,85.512)
C2: (21.421,-24.473,86.618)
N1: (21.449,-23.424,87.429)
N3: (20.403,-25.032,86.014)
N6: (20.398,-21.756,88.545)
N7: (17.853,-22.871,87.191)
N9: (18.105,-24.645,85.884)
O5': (14.427,-26.386,86.877)
O3': (16.440,-28.935,86.084)
OP2: (13.489,-24.028,86.888)
C3': (16.651,-27.530,86.010)
C1': (17.760,-25.721,84.959)
C5': (14.396,-26.582,85.493)
O4': (16.396,-25.632,84.701)
C8: (17.270,-23.724,86.415)
O2': (18.450,-27.943,84.426)
C6: (20.323,-22.787,87.725)
C5: (19.167,-23.269,87.133)
C4: (19.319,-24.353,86.318)
P: (13.400,-25.381,87.575)
C4': (15.747,-26.871,85.005)
C2': (18.037,-27.120,85.512)
C2: (21.421,-24.473,86.618)
N1: (21.449,-23.424,87.429)
N3: (20.403,-25.032,86.014)
N6: (20.398,-21.756,88.545)
N7: (17.853,-22.871,87.191)
N9: (18.105,-24.645,85.884)
O5': (14.427,-26.386,86.877)
O3': (16.440,-28.935,86.084)
Image (generated by PyMOL):