Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A352:A351
Extra
PDB:
ATOM 1 O3' A A 351 58.535 118.263 -9.894 1.00101.99 O
ATOM 2 P C A 352 59.909 117.513 -10.318 1.00102.20 P
ATOM 3 OP1 C A 352 59.958 117.438 -11.802 1.00102.59 O
ATOM 4 OP2 C A 352 60.099 116.275 -9.518 1.00101.84 O
ATOM 5 O5' C A 352 61.039 118.521 -9.857 1.00100.55 O
ATOM 6 C5' C A 352 61.166 119.804 -10.463 1.00 99.34 C
ATOM 7 C4' C A 352 62.450 120.429 -10.014 1.00 99.40 C
ATOM 8 O4' C A 352 62.341 120.781 -8.603 1.00 99.40 O
ATOM 9 C3' C A 352 63.649 119.492 -10.060 1.00 99.16 C
ATOM 10 O3' C A 352 64.199 119.320 -11.362 1.00 99.24 O
ATOM 11 C2' C A 352 64.588 120.140 -9.054 1.00 98.89 C
ATOM 12 O2' C A 352 65.268 121.267 -9.566 1.00 98.29 O
ATOM 13 C1' C A 352 63.596 120.566 -7.965 1.00 98.80 C
ATOM 14 N1 C A 352 63.442 119.513 -6.938 1.00 98.32 N
ATOM 15 C2 C A 352 64.338 119.487 -5.855 1.00 98.23 C
ATOM 16 O2 C A 352 65.217 120.366 -5.772 1.00 98.02 O
ATOM 17 N3 C A 352 64.226 118.504 -4.930 1.00 97.74 N
ATOM 18 C4 C A 352 63.272 117.578 -5.050 1.00 97.24 C
ATOM 19 N4 C A 352 63.209 116.624 -4.122 1.00 96.92 N
ATOM 20 C5 C A 352 62.342 117.588 -6.130 1.00 97.42 C
ATOM 21 C6 C A 352 62.461 118.563 -7.041 1.00 97.83 C
ATOM 22 P G A 353 64.697 117.859 -11.831 1.00 99.66 P
ATOM 23 OP1 G A 353 64.829 117.903 -13.306 1.00100.50 O
ATOM 24 OP2 G A 353 63.843 116.811 -11.204 1.00 99.40 O
ATOM 25 O5' G A 353 66.164 117.736 -11.226 1.00 99.89 O
TER
ATOM 1 O3' G B 350 53.828 116.112 -6.253 1.00103.88 O
ATOM 2 P A B 351 55.123 115.304 -6.771 1.00104.30 P
ATOM 3 OP1 A B 351 54.679 114.508 -7.944 1.00103.27 O
ATOM 4 OP2 A B 351 55.752 114.606 -5.605 1.00103.75 O
ATOM 5 O5' A B 351 56.127 116.450 -7.263 1.00102.57 O
ATOM 6 C5' A B 351 55.751 117.389 -8.307 1.00101.84 C
ATOM 7 C4' A B 351 56.666 118.597 -8.291 1.00101.17 C
ATOM 8 O4' A B 351 56.582 119.206 -6.977 1.00101.32 O
ATOM 9 C3' A B 351 58.155 118.340 -8.509 1.00101.39 C
ATOM 10 O3' A B 351 58.535 118.263 -9.894 1.00101.99 O
ATOM 11 C2' A B 351 58.799 119.504 -7.767 1.00101.15 C
ATOM 12 O2' A B 351 58.817 120.724 -8.483 1.00100.83 O
ATOM 13 C1' A B 351 57.870 119.629 -6.557 1.00101.41 C
ATOM 14 N9 A B 351 58.287 118.784 -5.432 1.00101.84 N
ATOM 15 C8 A B 351 57.785 117.560 -5.053 1.00102.03 C
ATOM 16 N7 A B 351 58.384 117.043 -4.008 1.00102.36 N
ATOM 17 C5 A B 351 59.347 117.985 -3.676 1.00102.08 C
ATOM 18 C6 A B 351 60.321 118.028 -2.664 1.00102.26 C
ATOM 19 N6 A B 351 60.505 117.061 -1.759 1.00102.80 N
ATOM 20 N1 A B 351 61.113 119.117 -2.610 1.00102.34 N
ATOM 21 C2 A B 351 60.934 120.089 -3.514 1.00102.09 C
ATOM 22 N3 A B 351 60.065 120.162 -4.509 1.00102.02 N
ATOM 23 C4 A B 351 59.291 119.066 -4.538 1.00101.86 C
ATOM 24 P C B 352 59.909 117.513 -10.318 1.00102.20 P
ATOM 25 OP1 C B 352 59.958 117.438 -11.802 1.00102.59 O
ATOM 26 OP2 C B 352 60.099 116.275 -9.518 1.00101.84 O
ATOM 27 O5' C B 352 61.039 118.521 -9.857 1.00100.55 O
TER
ATOM 2 P C A 352 59.909 117.513 -10.318 1.00102.20 P
ATOM 3 OP1 C A 352 59.958 117.438 -11.802 1.00102.59 O
ATOM 4 OP2 C A 352 60.099 116.275 -9.518 1.00101.84 O
ATOM 5 O5' C A 352 61.039 118.521 -9.857 1.00100.55 O
ATOM 6 C5' C A 352 61.166 119.804 -10.463 1.00 99.34 C
ATOM 7 C4' C A 352 62.450 120.429 -10.014 1.00 99.40 C
ATOM 8 O4' C A 352 62.341 120.781 -8.603 1.00 99.40 O
ATOM 9 C3' C A 352 63.649 119.492 -10.060 1.00 99.16 C
ATOM 10 O3' C A 352 64.199 119.320 -11.362 1.00 99.24 O
ATOM 11 C2' C A 352 64.588 120.140 -9.054 1.00 98.89 C
ATOM 12 O2' C A 352 65.268 121.267 -9.566 1.00 98.29 O
ATOM 13 C1' C A 352 63.596 120.566 -7.965 1.00 98.80 C
ATOM 14 N1 C A 352 63.442 119.513 -6.938 1.00 98.32 N
ATOM 15 C2 C A 352 64.338 119.487 -5.855 1.00 98.23 C
ATOM 16 O2 C A 352 65.217 120.366 -5.772 1.00 98.02 O
ATOM 17 N3 C A 352 64.226 118.504 -4.930 1.00 97.74 N
ATOM 18 C4 C A 352 63.272 117.578 -5.050 1.00 97.24 C
ATOM 19 N4 C A 352 63.209 116.624 -4.122 1.00 96.92 N
ATOM 20 C5 C A 352 62.342 117.588 -6.130 1.00 97.42 C
ATOM 21 C6 C A 352 62.461 118.563 -7.041 1.00 97.83 C
ATOM 22 P G A 353 64.697 117.859 -11.831 1.00 99.66 P
ATOM 23 OP1 G A 353 64.829 117.903 -13.306 1.00100.50 O
ATOM 24 OP2 G A 353 63.843 116.811 -11.204 1.00 99.40 O
ATOM 25 O5' G A 353 66.164 117.736 -11.226 1.00 99.89 O
TER
ATOM 1 O3' G B 350 53.828 116.112 -6.253 1.00103.88 O
ATOM 2 P A B 351 55.123 115.304 -6.771 1.00104.30 P
ATOM 3 OP1 A B 351 54.679 114.508 -7.944 1.00103.27 O
ATOM 4 OP2 A B 351 55.752 114.606 -5.605 1.00103.75 O
ATOM 5 O5' A B 351 56.127 116.450 -7.263 1.00102.57 O
ATOM 6 C5' A B 351 55.751 117.389 -8.307 1.00101.84 C
ATOM 7 C4' A B 351 56.666 118.597 -8.291 1.00101.17 C
ATOM 8 O4' A B 351 56.582 119.206 -6.977 1.00101.32 O
ATOM 9 C3' A B 351 58.155 118.340 -8.509 1.00101.39 C
ATOM 10 O3' A B 351 58.535 118.263 -9.894 1.00101.99 O
ATOM 11 C2' A B 351 58.799 119.504 -7.767 1.00101.15 C
ATOM 12 O2' A B 351 58.817 120.724 -8.483 1.00100.83 O
ATOM 13 C1' A B 351 57.870 119.629 -6.557 1.00101.41 C
ATOM 14 N9 A B 351 58.287 118.784 -5.432 1.00101.84 N
ATOM 15 C8 A B 351 57.785 117.560 -5.053 1.00102.03 C
ATOM 16 N7 A B 351 58.384 117.043 -4.008 1.00102.36 N
ATOM 17 C5 A B 351 59.347 117.985 -3.676 1.00102.08 C
ATOM 18 C6 A B 351 60.321 118.028 -2.664 1.00102.26 C
ATOM 19 N6 A B 351 60.505 117.061 -1.759 1.00102.80 N
ATOM 20 N1 A B 351 61.113 119.117 -2.610 1.00102.34 N
ATOM 21 C2 A B 351 60.934 120.089 -3.514 1.00102.09 C
ATOM 22 N3 A B 351 60.065 120.162 -4.509 1.00102.02 N
ATOM 23 C4 A B 351 59.291 119.066 -4.538 1.00101.86 C
ATOM 24 P C B 352 59.909 117.513 -10.318 1.00102.20 P
ATOM 25 OP1 C B 352 59.958 117.438 -11.802 1.00102.59 O
ATOM 26 OP2 C B 352 60.099 116.275 -9.518 1.00101.84 O
ATOM 27 O5' C B 352 61.039 118.521 -9.857 1.00100.55 O
TER
Atoms:
C2: (64.338,119.487,-5.855)
OP1: (59.958,117.438,-11.802)
OP2: (60.099,116.275,-9.518)
C4: (63.272,117.578,-5.050)
O5': (61.039,118.521,-9.857)
C3': (63.649,119.492,-10.060)
C1': (63.596,120.566,-7.965)
O4': (62.341,120.781,-8.603)
C5': (61.166,119.804,-10.463)
P: (59.909,117.513,-10.318)
O2: (65.217,120.366,-5.772)
C4': (62.450,120.429,-10.014)
C2': (64.588,120.140,-9.054)
O2': (65.268,121.267,-9.566)
N1: (63.442,119.513,-6.938)
N3: (64.226,118.504,-4.930)
N4: (63.209,116.624,-4.122)
C6: (62.461,118.563,-7.041)
C5: (62.342,117.588,-6.130)
O3': (64.199,119.320,-11.362)
OP1: (59.958,117.438,-11.802)
OP2: (60.099,116.275,-9.518)
C4: (63.272,117.578,-5.050)
O5': (61.039,118.521,-9.857)
C3': (63.649,119.492,-10.060)
C1': (63.596,120.566,-7.965)
O4': (62.341,120.781,-8.603)
C5': (61.166,119.804,-10.463)
P: (59.909,117.513,-10.318)
O2: (65.217,120.366,-5.772)
C4': (62.450,120.429,-10.014)
C2': (64.588,120.140,-9.054)
O2': (65.268,121.267,-9.566)
N1: (63.442,119.513,-6.938)
N3: (64.226,118.504,-4.930)
N4: (63.209,116.624,-4.122)
C6: (62.461,118.563,-7.041)
C5: (62.342,117.588,-6.130)
O3': (64.199,119.320,-11.362)
OP1: (54.679,114.508,-7.944)
OP2: (55.752,114.606,-5.605)
C3': (58.155,118.340,-8.509)
C1': (57.870,119.629,-6.557)
C5': (55.751,117.389,-8.307)
O4': (56.582,119.206,-6.977)
C8: (57.785,117.560,-5.053)
O2': (58.817,120.724,-8.483)
C6: (60.321,118.028,-2.664)
C5: (59.347,117.985,-3.676)
C4: (59.291,119.066,-4.538)
P: (55.123,115.304,-6.771)
C4': (56.666,118.597,-8.291)
C2': (58.799,119.504,-7.767)
C2: (60.934,120.089,-3.514)
N1: (61.113,119.117,-2.610)
N3: (60.065,120.162,-4.509)
N6: (60.505,117.061,-1.759)
N7: (58.384,117.043,-4.008)
N9: (58.287,118.784,-5.432)
O5': (56.127,116.450,-7.263)
O3': (58.535,118.263,-9.894)
OP2: (55.752,114.606,-5.605)
C3': (58.155,118.340,-8.509)
C1': (57.870,119.629,-6.557)
C5': (55.751,117.389,-8.307)
O4': (56.582,119.206,-6.977)
C8: (57.785,117.560,-5.053)
O2': (58.817,120.724,-8.483)
C6: (60.321,118.028,-2.664)
C5: (59.347,117.985,-3.676)
C4: (59.291,119.066,-4.538)
P: (55.123,115.304,-6.771)
C4': (56.666,118.597,-8.291)
C2': (58.799,119.504,-7.767)
C2: (60.934,120.089,-3.514)
N1: (61.113,119.117,-2.610)
N3: (60.065,120.162,-4.509)
N6: (60.505,117.061,-1.759)
N7: (58.384,117.043,-4.008)
N9: (58.287,118.784,-5.432)
O5': (56.127,116.450,-7.263)
O3': (58.535,118.263,-9.894)
Image (generated by PyMOL):