Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1D4R:C26:C25
Extra
PDB:
ATOM 1 O3' A A 25 -5.868 12.634 74.459 1.00 75.66 O
ATOM 2 P C A 26 -6.759 11.911 75.586 1.00 73.80 P
ATOM 3 OP1 C A 26 -7.243 12.968 76.508 1.00 75.51 O
ATOM 4 OP2 C A 26 -5.970 10.774 76.121 1.00 72.17 O
ATOM 5 O5' C A 26 -8.000 11.316 74.784 1.00 67.95 O
ATOM 6 C5' C A 26 -8.978 12.176 74.213 1.00 71.39 C
ATOM 7 C4' C A 26 -9.929 11.385 73.351 1.00 73.55 C
ATOM 8 O4' C A 26 -9.175 10.630 72.367 1.00 74.82 O
ATOM 9 C3' C A 26 -10.772 10.340 74.068 1.00 75.27 C
ATOM 10 O3' C A 26 -11.944 10.926 74.626 1.00 81.27 O
ATOM 11 C2' C A 26 -11.108 9.377 72.937 1.00 72.47 C
ATOM 12 O2' C A 26 -12.183 9.787 72.120 1.00 69.78 O
ATOM 13 C1' C A 26 -9.801 9.376 72.144 1.00 71.66 C
ATOM 14 N1 C A 26 -8.876 8.299 72.551 1.00 70.23 N
ATOM 15 C2 C A 26 -9.114 6.994 72.086 1.00 69.01 C
ATOM 16 O2 C A 26 -10.084 6.789 71.339 1.00 67.05 O
ATOM 17 N3 C A 26 -8.281 5.997 72.463 1.00 70.89 N
ATOM 18 C4 C A 26 -7.244 6.260 73.266 1.00 75.29 C
ATOM 19 N4 C A 26 -6.446 5.246 73.614 1.00 76.57 N
ATOM 20 C5 C A 26 -6.977 7.575 73.749 1.00 73.57 C
ATOM 21 C6 C A 26 -7.810 8.554 73.371 1.00 68.79 C
ATOM 22 P U A 27 -12.458 10.460 76.078 1.00 79.74 P
ATOM 23 OP1 U A 27 -13.527 11.416 76.462 1.00 84.47 O
ATOM 24 OP2 U A 27 -11.298 10.262 76.987 1.00 79.58 O
ATOM 25 O5' U A 27 -13.134 9.046 75.799 1.00 79.59 O
TER
ATOM 1 O3' C B 24 -0.033 10.676 73.119 1.00 75.88 O
ATOM 2 P A B 25 -1.107 10.341 74.271 1.00 78.80 P
ATOM 3 OP1 A B 25 -0.728 11.168 75.443 1.00 84.63 O
ATOM 4 OP2 A B 25 -1.204 8.863 74.418 1.00 82.32 O
ATOM 5 O5' A B 25 -2.496 10.871 73.688 1.00 75.94 O
ATOM 6 C5' A B 25 -2.747 12.268 73.523 1.00 72.52 C
ATOM 7 C4' A B 25 -4.058 12.489 72.799 1.00 72.07 C
ATOM 8 O4' A B 25 -3.989 11.905 71.467 1.00 69.96 O
ATOM 9 C3' A B 25 -5.302 11.856 73.409 1.00 72.57 C
ATOM 10 O3' A B 25 -5.868 12.634 74.459 1.00 75.66 O
ATOM 11 C2' A B 25 -6.223 11.782 72.200 1.00 71.70 C
ATOM 12 O2' A B 25 -6.764 13.037 71.833 1.00 69.28 O
ATOM 13 C1' A B 25 -5.238 11.312 71.135 1.00 68.19 C
ATOM 14 N9 A B 25 -5.077 9.855 71.107 1.00 66.81 N
ATOM 15 C8 A B 25 -4.116 9.095 71.728 1.00 66.10 C
ATOM 16 N7 A B 25 -4.236 7.807 71.510 1.00 62.40 N
ATOM 17 C5 A B 25 -5.349 7.711 70.691 1.00 63.21 C
ATOM 18 C6 A B 25 -5.993 6.612 70.103 1.00 68.39 C
ATOM 19 N6 A B 25 -5.579 5.350 70.247 1.00 69.19 N
ATOM 20 N1 A B 25 -7.087 6.855 69.348 1.00 66.98 N
ATOM 21 C2 A B 25 -7.491 8.121 69.196 1.00 58.05 C
ATOM 22 N3 A B 25 -6.963 9.239 69.688 1.00 65.22 N
ATOM 23 C4 A B 25 -5.882 8.962 70.437 1.00 65.43 C
ATOM 24 P C B 26 -6.759 11.911 75.586 1.00 73.80 P
ATOM 25 OP1 C B 26 -7.243 12.968 76.508 1.00 75.51 O
ATOM 26 OP2 C B 26 -5.970 10.774 76.121 1.00 72.17 O
ATOM 27 O5' C B 26 -8.000 11.316 74.784 1.00 67.95 O
TER
ATOM 2 P C A 26 -6.759 11.911 75.586 1.00 73.80 P
ATOM 3 OP1 C A 26 -7.243 12.968 76.508 1.00 75.51 O
ATOM 4 OP2 C A 26 -5.970 10.774 76.121 1.00 72.17 O
ATOM 5 O5' C A 26 -8.000 11.316 74.784 1.00 67.95 O
ATOM 6 C5' C A 26 -8.978 12.176 74.213 1.00 71.39 C
ATOM 7 C4' C A 26 -9.929 11.385 73.351 1.00 73.55 C
ATOM 8 O4' C A 26 -9.175 10.630 72.367 1.00 74.82 O
ATOM 9 C3' C A 26 -10.772 10.340 74.068 1.00 75.27 C
ATOM 10 O3' C A 26 -11.944 10.926 74.626 1.00 81.27 O
ATOM 11 C2' C A 26 -11.108 9.377 72.937 1.00 72.47 C
ATOM 12 O2' C A 26 -12.183 9.787 72.120 1.00 69.78 O
ATOM 13 C1' C A 26 -9.801 9.376 72.144 1.00 71.66 C
ATOM 14 N1 C A 26 -8.876 8.299 72.551 1.00 70.23 N
ATOM 15 C2 C A 26 -9.114 6.994 72.086 1.00 69.01 C
ATOM 16 O2 C A 26 -10.084 6.789 71.339 1.00 67.05 O
ATOM 17 N3 C A 26 -8.281 5.997 72.463 1.00 70.89 N
ATOM 18 C4 C A 26 -7.244 6.260 73.266 1.00 75.29 C
ATOM 19 N4 C A 26 -6.446 5.246 73.614 1.00 76.57 N
ATOM 20 C5 C A 26 -6.977 7.575 73.749 1.00 73.57 C
ATOM 21 C6 C A 26 -7.810 8.554 73.371 1.00 68.79 C
ATOM 22 P U A 27 -12.458 10.460 76.078 1.00 79.74 P
ATOM 23 OP1 U A 27 -13.527 11.416 76.462 1.00 84.47 O
ATOM 24 OP2 U A 27 -11.298 10.262 76.987 1.00 79.58 O
ATOM 25 O5' U A 27 -13.134 9.046 75.799 1.00 79.59 O
TER
ATOM 1 O3' C B 24 -0.033 10.676 73.119 1.00 75.88 O
ATOM 2 P A B 25 -1.107 10.341 74.271 1.00 78.80 P
ATOM 3 OP1 A B 25 -0.728 11.168 75.443 1.00 84.63 O
ATOM 4 OP2 A B 25 -1.204 8.863 74.418 1.00 82.32 O
ATOM 5 O5' A B 25 -2.496 10.871 73.688 1.00 75.94 O
ATOM 6 C5' A B 25 -2.747 12.268 73.523 1.00 72.52 C
ATOM 7 C4' A B 25 -4.058 12.489 72.799 1.00 72.07 C
ATOM 8 O4' A B 25 -3.989 11.905 71.467 1.00 69.96 O
ATOM 9 C3' A B 25 -5.302 11.856 73.409 1.00 72.57 C
ATOM 10 O3' A B 25 -5.868 12.634 74.459 1.00 75.66 O
ATOM 11 C2' A B 25 -6.223 11.782 72.200 1.00 71.70 C
ATOM 12 O2' A B 25 -6.764 13.037 71.833 1.00 69.28 O
ATOM 13 C1' A B 25 -5.238 11.312 71.135 1.00 68.19 C
ATOM 14 N9 A B 25 -5.077 9.855 71.107 1.00 66.81 N
ATOM 15 C8 A B 25 -4.116 9.095 71.728 1.00 66.10 C
ATOM 16 N7 A B 25 -4.236 7.807 71.510 1.00 62.40 N
ATOM 17 C5 A B 25 -5.349 7.711 70.691 1.00 63.21 C
ATOM 18 C6 A B 25 -5.993 6.612 70.103 1.00 68.39 C
ATOM 19 N6 A B 25 -5.579 5.350 70.247 1.00 69.19 N
ATOM 20 N1 A B 25 -7.087 6.855 69.348 1.00 66.98 N
ATOM 21 C2 A B 25 -7.491 8.121 69.196 1.00 58.05 C
ATOM 22 N3 A B 25 -6.963 9.239 69.688 1.00 65.22 N
ATOM 23 C4 A B 25 -5.882 8.962 70.437 1.00 65.43 C
ATOM 24 P C B 26 -6.759 11.911 75.586 1.00 73.80 P
ATOM 25 OP1 C B 26 -7.243 12.968 76.508 1.00 75.51 O
ATOM 26 OP2 C B 26 -5.970 10.774 76.121 1.00 72.17 O
ATOM 27 O5' C B 26 -8.000 11.316 74.784 1.00 67.95 O
TER
Atoms:
C2: (-9.114,6.994,72.086)
OP1: (-7.243,12.968,76.508)
OP2: (-5.970,10.774,76.121)
C4: (-7.244,6.260,73.266)
O5': (-8.000,11.316,74.784)
C3': (-10.772,10.340,74.068)
C1': (-9.801,9.376,72.144)
O4': (-9.175,10.630,72.367)
C5': (-8.978,12.176,74.213)
P: (-6.759,11.911,75.586)
O2: (-10.084,6.789,71.339)
C4': (-9.929,11.385,73.351)
C2': (-11.108,9.377,72.937)
O2': (-12.183,9.787,72.120)
N1: (-8.876,8.299,72.551)
N3: (-8.281,5.997,72.463)
N4: (-6.446,5.246,73.614)
C6: (-7.810,8.554,73.371)
C5: (-6.977,7.575,73.749)
O3': (-11.944,10.926,74.626)
OP1: (-7.243,12.968,76.508)
OP2: (-5.970,10.774,76.121)
C4: (-7.244,6.260,73.266)
O5': (-8.000,11.316,74.784)
C3': (-10.772,10.340,74.068)
C1': (-9.801,9.376,72.144)
O4': (-9.175,10.630,72.367)
C5': (-8.978,12.176,74.213)
P: (-6.759,11.911,75.586)
O2: (-10.084,6.789,71.339)
C4': (-9.929,11.385,73.351)
C2': (-11.108,9.377,72.937)
O2': (-12.183,9.787,72.120)
N1: (-8.876,8.299,72.551)
N3: (-8.281,5.997,72.463)
N4: (-6.446,5.246,73.614)
C6: (-7.810,8.554,73.371)
C5: (-6.977,7.575,73.749)
O3': (-11.944,10.926,74.626)
OP1: (-0.728,11.168,75.443)
OP2: (-1.204,8.863,74.418)
C3': (-5.302,11.856,73.409)
C1': (-5.238,11.312,71.135)
C5': (-2.747,12.268,73.523)
O4': (-3.989,11.905,71.467)
C8: (-4.116,9.095,71.728)
O2': (-6.764,13.037,71.833)
C6: (-5.993,6.612,70.103)
C5: (-5.349,7.711,70.691)
C4: (-5.882,8.962,70.437)
P: (-1.107,10.341,74.271)
C4': (-4.058,12.489,72.799)
C2': (-6.223,11.782,72.200)
C2: (-7.491,8.121,69.196)
N1: (-7.087,6.855,69.348)
N3: (-6.963,9.239,69.688)
N6: (-5.579,5.350,70.247)
N7: (-4.236,7.807,71.510)
N9: (-5.077,9.855,71.107)
O5': (-2.496,10.871,73.688)
O3': (-5.868,12.634,74.459)
OP2: (-1.204,8.863,74.418)
C3': (-5.302,11.856,73.409)
C1': (-5.238,11.312,71.135)
C5': (-2.747,12.268,73.523)
O4': (-3.989,11.905,71.467)
C8: (-4.116,9.095,71.728)
O2': (-6.764,13.037,71.833)
C6: (-5.993,6.612,70.103)
C5: (-5.349,7.711,70.691)
C4: (-5.882,8.962,70.437)
P: (-1.107,10.341,74.271)
C4': (-4.058,12.489,72.799)
C2': (-6.223,11.782,72.200)
C2: (-7.491,8.121,69.196)
N1: (-7.087,6.855,69.348)
N3: (-6.963,9.239,69.688)
N6: (-5.579,5.350,70.247)
N7: (-4.236,7.807,71.510)
N9: (-5.077,9.855,71.107)
O5': (-2.496,10.871,73.688)
O3': (-5.868,12.634,74.459)
Image (generated by PyMOL):