Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3P59:A12:A11
Extra
PDB:
ATOM 1 O3' A A 11 -3.763 -41.505 -0.327 1.00 36.57 O
ATOM 2 P C A 12 -2.653 -41.888 0.749 1.00 45.72 P
ATOM 3 OP1 C A 12 -2.254 -43.298 0.486 1.00 50.85 O
ATOM 4 OP2 C A 12 -3.200 -41.535 2.086 1.00 49.10 O
ATOM 5 O5' C A 12 -1.457 -40.905 0.368 1.00 44.41 O
ATOM 6 C5' C A 12 -1.010 -40.803 -0.976 1.00 36.96 C
ATOM 7 C4' C A 12 -0.240 -39.539 -1.211 1.00 30.65 C
ATOM 8 O4' C A 12 -1.130 -38.398 -1.147 1.00 33.75 O
ATOM 9 C3' C A 12 0.855 -39.245 -0.201 1.00 33.23 C
ATOM 10 O3' C A 12 2.071 -39.893 -0.545 1.00 40.78 O
ATOM 11 C2' C A 12 0.953 -37.721 -0.198 1.00 26.40 C
ATOM 12 O2' C A 12 1.858 -37.261 -1.184 1.00 27.23 O
ATOM 13 C1' C A 12 -0.475 -37.289 -0.581 1.00 31.08 C
ATOM 14 N1 C A 12 -1.261 -36.842 0.595 1.00 26.57 N
ATOM 15 C2 C A 12 -1.190 -35.525 1.012 1.00 24.36 C
ATOM 16 O2 C A 12 -0.470 -34.727 0.406 1.00 26.58 O
ATOM 17 N3 C A 12 -1.910 -35.151 2.081 1.00 31.07 N
ATOM 18 C4 C A 12 -2.681 -36.035 2.721 1.00 32.64 C
ATOM 19 N4 C A 12 -3.376 -35.597 3.779 1.00 39.24 N
ATOM 20 C5 C A 12 -2.780 -37.397 2.316 1.00 29.42 C
ATOM 21 C6 C A 12 -2.049 -37.750 1.254 1.00 27.81 C
TER
ATOM 1 O3' U B 10 -9.515 -40.924 1.995 1.00 51.86 O
ATOM 2 P A B 11 -8.212 -41.213 2.908 1.00 58.71 P
ATOM 3 OP1 A B 11 -8.168 -42.679 3.166 1.00 58.30 O
ATOM 4 OP2 A B 11 -8.279 -40.296 4.063 1.00 59.23 O
ATOM 5 O5' A B 11 -7.012 -40.799 1.945 1.00 62.76 O
ATOM 6 C5' A B 11 -6.727 -41.564 0.785 1.00 53.83 C
ATOM 7 C4' A B 11 -6.066 -40.742 -0.295 1.00 41.12 C
ATOM 8 O4' A B 11 -6.685 -39.441 -0.405 1.00 34.40 O
ATOM 9 C3' A B 11 -4.610 -40.407 -0.095 1.00 37.21 C
ATOM 10 O3' A B 11 -3.763 -41.505 -0.327 1.00 36.57 O
ATOM 11 C2' A B 11 -4.409 -39.262 -1.080 1.00 37.54 C
ATOM 12 O2' A B 11 -4.269 -39.757 -2.407 1.00 38.04 O
ATOM 13 C1' A B 11 -5.753 -38.534 -0.973 1.00 30.69 C
ATOM 14 N9 A B 11 -5.675 -37.332 -0.123 1.00 28.24 N
ATOM 15 C8 A B 11 -6.191 -37.190 1.136 1.00 30.86 C
ATOM 16 N7 A B 11 -5.999 -36.003 1.663 1.00 30.52 N
ATOM 17 C5 A B 11 -5.301 -35.315 0.687 1.00 28.03 C
ATOM 18 C6 A B 11 -4.812 -33.999 0.640 1.00 34.89 C
ATOM 19 N6 A B 11 -4.951 -33.145 1.650 1.00 38.94 N
ATOM 20 N1 A B 11 -4.174 -33.585 -0.485 1.00 33.28 N
ATOM 21 C2 A B 11 -4.042 -34.468 -1.491 1.00 32.53 C
ATOM 22 N3 A B 11 -4.470 -35.731 -1.564 1.00 28.98 N
ATOM 23 C4 A B 11 -5.099 -36.109 -0.428 1.00 29.78 C
ATOM 24 P C B 12 -2.653 -41.888 0.749 1.00 45.72 P
ATOM 25 OP1 C B 12 -2.254 -43.298 0.486 1.00 50.85 O
ATOM 26 OP2 C B 12 -3.200 -41.535 2.086 1.00 49.10 O
ATOM 27 O5' C B 12 -1.457 -40.905 0.368 1.00 44.41 O
TER
ATOM 2 P C A 12 -2.653 -41.888 0.749 1.00 45.72 P
ATOM 3 OP1 C A 12 -2.254 -43.298 0.486 1.00 50.85 O
ATOM 4 OP2 C A 12 -3.200 -41.535 2.086 1.00 49.10 O
ATOM 5 O5' C A 12 -1.457 -40.905 0.368 1.00 44.41 O
ATOM 6 C5' C A 12 -1.010 -40.803 -0.976 1.00 36.96 C
ATOM 7 C4' C A 12 -0.240 -39.539 -1.211 1.00 30.65 C
ATOM 8 O4' C A 12 -1.130 -38.398 -1.147 1.00 33.75 O
ATOM 9 C3' C A 12 0.855 -39.245 -0.201 1.00 33.23 C
ATOM 10 O3' C A 12 2.071 -39.893 -0.545 1.00 40.78 O
ATOM 11 C2' C A 12 0.953 -37.721 -0.198 1.00 26.40 C
ATOM 12 O2' C A 12 1.858 -37.261 -1.184 1.00 27.23 O
ATOM 13 C1' C A 12 -0.475 -37.289 -0.581 1.00 31.08 C
ATOM 14 N1 C A 12 -1.261 -36.842 0.595 1.00 26.57 N
ATOM 15 C2 C A 12 -1.190 -35.525 1.012 1.00 24.36 C
ATOM 16 O2 C A 12 -0.470 -34.727 0.406 1.00 26.58 O
ATOM 17 N3 C A 12 -1.910 -35.151 2.081 1.00 31.07 N
ATOM 18 C4 C A 12 -2.681 -36.035 2.721 1.00 32.64 C
ATOM 19 N4 C A 12 -3.376 -35.597 3.779 1.00 39.24 N
ATOM 20 C5 C A 12 -2.780 -37.397 2.316 1.00 29.42 C
ATOM 21 C6 C A 12 -2.049 -37.750 1.254 1.00 27.81 C
TER
ATOM 1 O3' U B 10 -9.515 -40.924 1.995 1.00 51.86 O
ATOM 2 P A B 11 -8.212 -41.213 2.908 1.00 58.71 P
ATOM 3 OP1 A B 11 -8.168 -42.679 3.166 1.00 58.30 O
ATOM 4 OP2 A B 11 -8.279 -40.296 4.063 1.00 59.23 O
ATOM 5 O5' A B 11 -7.012 -40.799 1.945 1.00 62.76 O
ATOM 6 C5' A B 11 -6.727 -41.564 0.785 1.00 53.83 C
ATOM 7 C4' A B 11 -6.066 -40.742 -0.295 1.00 41.12 C
ATOM 8 O4' A B 11 -6.685 -39.441 -0.405 1.00 34.40 O
ATOM 9 C3' A B 11 -4.610 -40.407 -0.095 1.00 37.21 C
ATOM 10 O3' A B 11 -3.763 -41.505 -0.327 1.00 36.57 O
ATOM 11 C2' A B 11 -4.409 -39.262 -1.080 1.00 37.54 C
ATOM 12 O2' A B 11 -4.269 -39.757 -2.407 1.00 38.04 O
ATOM 13 C1' A B 11 -5.753 -38.534 -0.973 1.00 30.69 C
ATOM 14 N9 A B 11 -5.675 -37.332 -0.123 1.00 28.24 N
ATOM 15 C8 A B 11 -6.191 -37.190 1.136 1.00 30.86 C
ATOM 16 N7 A B 11 -5.999 -36.003 1.663 1.00 30.52 N
ATOM 17 C5 A B 11 -5.301 -35.315 0.687 1.00 28.03 C
ATOM 18 C6 A B 11 -4.812 -33.999 0.640 1.00 34.89 C
ATOM 19 N6 A B 11 -4.951 -33.145 1.650 1.00 38.94 N
ATOM 20 N1 A B 11 -4.174 -33.585 -0.485 1.00 33.28 N
ATOM 21 C2 A B 11 -4.042 -34.468 -1.491 1.00 32.53 C
ATOM 22 N3 A B 11 -4.470 -35.731 -1.564 1.00 28.98 N
ATOM 23 C4 A B 11 -5.099 -36.109 -0.428 1.00 29.78 C
ATOM 24 P C B 12 -2.653 -41.888 0.749 1.00 45.72 P
ATOM 25 OP1 C B 12 -2.254 -43.298 0.486 1.00 50.85 O
ATOM 26 OP2 C B 12 -3.200 -41.535 2.086 1.00 49.10 O
ATOM 27 O5' C B 12 -1.457 -40.905 0.368 1.00 44.41 O
TER
Atoms:
C2: (-1.190,-35.525,1.012)
OP1: (-2.254,-43.298,0.486)
OP2: (-3.200,-41.535,2.086)
C4: (-2.681,-36.035,2.721)
O5': (-1.457,-40.905,0.368)
C3': (0.855,-39.245,-0.201)
C1': (-0.475,-37.289,-0.581)
O4': (-1.130,-38.398,-1.147)
C5': (-1.010,-40.803,-0.976)
P: (-2.653,-41.888,0.749)
O2: (-0.470,-34.727,0.406)
C4': (-0.240,-39.539,-1.211)
C2': (0.953,-37.721,-0.198)
O2': (1.858,-37.261,-1.184)
N1: (-1.261,-36.842,0.595)
N3: (-1.910,-35.151,2.081)
N4: (-3.376,-35.597,3.779)
C6: (-2.049,-37.750,1.254)
C5: (-2.780,-37.397,2.316)
O3': (2.071,-39.893,-0.545)
OP1: (-2.254,-43.298,0.486)
OP2: (-3.200,-41.535,2.086)
C4: (-2.681,-36.035,2.721)
O5': (-1.457,-40.905,0.368)
C3': (0.855,-39.245,-0.201)
C1': (-0.475,-37.289,-0.581)
O4': (-1.130,-38.398,-1.147)
C5': (-1.010,-40.803,-0.976)
P: (-2.653,-41.888,0.749)
O2: (-0.470,-34.727,0.406)
C4': (-0.240,-39.539,-1.211)
C2': (0.953,-37.721,-0.198)
O2': (1.858,-37.261,-1.184)
N1: (-1.261,-36.842,0.595)
N3: (-1.910,-35.151,2.081)
N4: (-3.376,-35.597,3.779)
C6: (-2.049,-37.750,1.254)
C5: (-2.780,-37.397,2.316)
O3': (2.071,-39.893,-0.545)
OP1: (-8.168,-42.679,3.166)
OP2: (-8.279,-40.296,4.063)
C3': (-4.610,-40.407,-0.095)
C1': (-5.753,-38.534,-0.973)
C5': (-6.727,-41.564,0.785)
O4': (-6.685,-39.441,-0.405)
C8: (-6.191,-37.190,1.136)
O2': (-4.269,-39.757,-2.407)
C6: (-4.812,-33.999,0.640)
C5: (-5.301,-35.315,0.687)
C4: (-5.099,-36.109,-0.428)
P: (-8.212,-41.213,2.908)
C4': (-6.066,-40.742,-0.295)
C2': (-4.409,-39.262,-1.080)
C2: (-4.042,-34.468,-1.491)
N1: (-4.174,-33.585,-0.485)
N3: (-4.470,-35.731,-1.564)
N6: (-4.951,-33.145,1.650)
N7: (-5.999,-36.003,1.663)
N9: (-5.675,-37.332,-0.123)
O5': (-7.012,-40.799,1.945)
O3': (-3.763,-41.505,-0.327)
OP2: (-8.279,-40.296,4.063)
C3': (-4.610,-40.407,-0.095)
C1': (-5.753,-38.534,-0.973)
C5': (-6.727,-41.564,0.785)
O4': (-6.685,-39.441,-0.405)
C8: (-6.191,-37.190,1.136)
O2': (-4.269,-39.757,-2.407)
C6: (-4.812,-33.999,0.640)
C5: (-5.301,-35.315,0.687)
C4: (-5.099,-36.109,-0.428)
P: (-8.212,-41.213,2.908)
C4': (-6.066,-40.742,-0.295)
C2': (-4.409,-39.262,-1.080)
C2: (-4.042,-34.468,-1.491)
N1: (-4.174,-33.585,-0.485)
N3: (-4.470,-35.731,-1.564)
N6: (-4.951,-33.145,1.650)
N7: (-5.999,-36.003,1.663)
N9: (-5.675,-37.332,-0.123)
O5': (-7.012,-40.799,1.945)
O3': (-3.763,-41.505,-0.327)
Image (generated by PyMOL):