Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2385:A2417
Extra
PDB:
ATOM 1 O3' G A2384 -109.515 -47.727 41.954 1.00 0.01 O
ATOM 2 P A A2385 -109.594 -48.456 43.395 1.00 0.01 P
ATOM 3 OP1 A A2385 -110.964 -48.314 43.910 1.00 0.01 O
ATOM 4 OP2 A A2385 -108.471 -47.956 44.222 1.00 0.01 O
ATOM 5 O5' A A2385 -109.341 -49.941 43.001 1.00 0.01 O
ATOM 6 C5' A A2385 -109.886 -50.978 43.752 1.00 0.01 C
ATOM 7 C4' A A2385 -108.992 -52.152 43.667 1.00 0.01 C
ATOM 8 O4' A A2385 -108.229 -52.051 42.451 1.00 0.01 O
ATOM 9 C3' A A2385 -107.947 -52.244 44.744 1.00 0.01 C
ATOM 10 O3' A A2385 -108.459 -52.819 45.926 1.00 0.01 O
ATOM 11 C2' A A2385 -106.871 -53.066 44.077 1.00 0.01 C
ATOM 12 O2' A A2385 -107.244 -54.429 44.063 1.00 0.01 O
ATOM 13 C1' A A2385 -106.942 -52.548 42.653 1.00 0.01 C
ATOM 14 N9 A A2385 -106.004 -51.459 42.373 1.00 0.02 N
ATOM 15 C8 A A2385 -106.408 -50.320 41.719 1.00 0.02 C
ATOM 16 N7 A A2385 -105.452 -49.456 41.500 1.00 0.02 N
ATOM 17 C5 A A2385 -104.343 -50.088 42.025 1.00 0.02 C
ATOM 18 C6 A A2385 -103.023 -49.682 42.097 1.00 0.02 C
ATOM 19 N6 A A2385 -102.604 -48.504 41.611 1.00 0.02 N
ATOM 20 N1 A A2385 -102.158 -50.529 42.682 1.00 0.02 N
ATOM 21 C2 A A2385 -102.586 -51.688 43.154 1.00 0.02 C
ATOM 22 N3 A A2385 -103.800 -52.178 43.132 1.00 0.02 N
ATOM 23 C4 A A2385 -104.648 -51.326 42.552 1.00 0.02 C
ATOM 24 P U A2386 -108.561 -51.949 47.250 1.00 0.01 P
ATOM 25 OP1 U A2386 -109.502 -52.636 48.161 1.00 0.01 O
ATOM 26 OP2 U A2386 -108.853 -50.566 46.834 1.00 0.01 O
ATOM 27 O5' U A2386 -107.083 -52.055 47.811 1.00 0.01 O
TER
ATOM 1 O3' U B2416 -104.817 -39.430 33.370 1.00 15.95 O
ATOM 2 P C B2417 -103.561 -40.091 34.064 1.00 0.01 P
ATOM 3 OP1 C B2417 -103.278 -39.292 35.298 1.00 0.01 O
ATOM 4 OP2 C B2417 -102.514 -40.210 33.016 1.00 0.01 O
ATOM 5 O5' C B2417 -104.100 -41.547 34.455 1.00 0.01 O
ATOM 6 C5' C B2417 -104.132 -41.994 35.806 1.00 0.01 C
ATOM 7 C4' C B2417 -102.947 -42.867 36.154 1.00 0.01 C
ATOM 8 O4' C B2417 -102.858 -42.970 37.594 1.00 0.01 O
ATOM 9 C3' C B2417 -103.005 -44.306 35.671 1.00 0.01 C
ATOM 10 O3' C B2417 -102.525 -44.461 34.359 1.00 0.01 O
ATOM 11 C2' C B2417 -102.181 -45.048 36.714 1.00 0.01 C
ATOM 12 O2' C B2417 -100.786 -44.921 36.470 1.00 0.01 O
ATOM 13 C1' C B2417 -102.528 -44.274 37.981 1.00 0.01 C
ATOM 14 N1 C B2417 -103.687 -44.847 38.678 1.00 0.01 N
ATOM 15 C2 C B2417 -103.516 -45.853 39.591 1.00 0.01 C
ATOM 16 O2 C B2417 -102.400 -46.255 39.852 1.00 0.01 O
ATOM 17 N3 C B2417 -104.574 -46.383 40.204 1.00 0.01 N
ATOM 18 C4 C B2417 -105.804 -45.956 39.951 1.00 0.01 C
ATOM 19 N4 C B2417 -106.826 -46.541 40.603 1.00 0.01 N
ATOM 20 C5 C B2417 -106.005 -44.920 39.004 1.00 0.01 C
ATOM 21 C6 C B2417 -104.931 -44.403 38.407 1.00 0.01 C
ATOM 22 P A B2418 -102.810 -45.804 33.533 1.00 0.01 P
ATOM 23 OP1 A B2418 -103.876 -46.527 34.225 1.00 0.01 O
ATOM 24 OP2 A B2418 -101.530 -46.450 33.345 1.00 0.01 O
ATOM 25 O5' A B2418 -103.332 -45.278 32.131 1.00 0.01 O
TER
ATOM 2 P A A2385 -109.594 -48.456 43.395 1.00 0.01 P
ATOM 3 OP1 A A2385 -110.964 -48.314 43.910 1.00 0.01 O
ATOM 4 OP2 A A2385 -108.471 -47.956 44.222 1.00 0.01 O
ATOM 5 O5' A A2385 -109.341 -49.941 43.001 1.00 0.01 O
ATOM 6 C5' A A2385 -109.886 -50.978 43.752 1.00 0.01 C
ATOM 7 C4' A A2385 -108.992 -52.152 43.667 1.00 0.01 C
ATOM 8 O4' A A2385 -108.229 -52.051 42.451 1.00 0.01 O
ATOM 9 C3' A A2385 -107.947 -52.244 44.744 1.00 0.01 C
ATOM 10 O3' A A2385 -108.459 -52.819 45.926 1.00 0.01 O
ATOM 11 C2' A A2385 -106.871 -53.066 44.077 1.00 0.01 C
ATOM 12 O2' A A2385 -107.244 -54.429 44.063 1.00 0.01 O
ATOM 13 C1' A A2385 -106.942 -52.548 42.653 1.00 0.01 C
ATOM 14 N9 A A2385 -106.004 -51.459 42.373 1.00 0.02 N
ATOM 15 C8 A A2385 -106.408 -50.320 41.719 1.00 0.02 C
ATOM 16 N7 A A2385 -105.452 -49.456 41.500 1.00 0.02 N
ATOM 17 C5 A A2385 -104.343 -50.088 42.025 1.00 0.02 C
ATOM 18 C6 A A2385 -103.023 -49.682 42.097 1.00 0.02 C
ATOM 19 N6 A A2385 -102.604 -48.504 41.611 1.00 0.02 N
ATOM 20 N1 A A2385 -102.158 -50.529 42.682 1.00 0.02 N
ATOM 21 C2 A A2385 -102.586 -51.688 43.154 1.00 0.02 C
ATOM 22 N3 A A2385 -103.800 -52.178 43.132 1.00 0.02 N
ATOM 23 C4 A A2385 -104.648 -51.326 42.552 1.00 0.02 C
ATOM 24 P U A2386 -108.561 -51.949 47.250 1.00 0.01 P
ATOM 25 OP1 U A2386 -109.502 -52.636 48.161 1.00 0.01 O
ATOM 26 OP2 U A2386 -108.853 -50.566 46.834 1.00 0.01 O
ATOM 27 O5' U A2386 -107.083 -52.055 47.811 1.00 0.01 O
TER
ATOM 1 O3' U B2416 -104.817 -39.430 33.370 1.00 15.95 O
ATOM 2 P C B2417 -103.561 -40.091 34.064 1.00 0.01 P
ATOM 3 OP1 C B2417 -103.278 -39.292 35.298 1.00 0.01 O
ATOM 4 OP2 C B2417 -102.514 -40.210 33.016 1.00 0.01 O
ATOM 5 O5' C B2417 -104.100 -41.547 34.455 1.00 0.01 O
ATOM 6 C5' C B2417 -104.132 -41.994 35.806 1.00 0.01 C
ATOM 7 C4' C B2417 -102.947 -42.867 36.154 1.00 0.01 C
ATOM 8 O4' C B2417 -102.858 -42.970 37.594 1.00 0.01 O
ATOM 9 C3' C B2417 -103.005 -44.306 35.671 1.00 0.01 C
ATOM 10 O3' C B2417 -102.525 -44.461 34.359 1.00 0.01 O
ATOM 11 C2' C B2417 -102.181 -45.048 36.714 1.00 0.01 C
ATOM 12 O2' C B2417 -100.786 -44.921 36.470 1.00 0.01 O
ATOM 13 C1' C B2417 -102.528 -44.274 37.981 1.00 0.01 C
ATOM 14 N1 C B2417 -103.687 -44.847 38.678 1.00 0.01 N
ATOM 15 C2 C B2417 -103.516 -45.853 39.591 1.00 0.01 C
ATOM 16 O2 C B2417 -102.400 -46.255 39.852 1.00 0.01 O
ATOM 17 N3 C B2417 -104.574 -46.383 40.204 1.00 0.01 N
ATOM 18 C4 C B2417 -105.804 -45.956 39.951 1.00 0.01 C
ATOM 19 N4 C B2417 -106.826 -46.541 40.603 1.00 0.01 N
ATOM 20 C5 C B2417 -106.005 -44.920 39.004 1.00 0.01 C
ATOM 21 C6 C B2417 -104.931 -44.403 38.407 1.00 0.01 C
ATOM 22 P A B2418 -102.810 -45.804 33.533 1.00 0.01 P
ATOM 23 OP1 A B2418 -103.876 -46.527 34.225 1.00 0.01 O
ATOM 24 OP2 A B2418 -101.530 -46.450 33.345 1.00 0.01 O
ATOM 25 O5' A B2418 -103.332 -45.278 32.131 1.00 0.01 O
TER
Atoms:
OP1: (-110.964,-48.314,43.910)
OP2: (-108.471,-47.956,44.222)
C3': (-107.947,-52.244,44.744)
C1': (-106.942,-52.548,42.653)
C5': (-109.886,-50.978,43.752)
O4': (-108.229,-52.051,42.451)
C8: (-106.408,-50.320,41.719)
O2': (-107.244,-54.429,44.063)
C6: (-103.023,-49.682,42.097)
C5: (-104.343,-50.088,42.025)
C4: (-104.648,-51.326,42.552)
P: (-109.594,-48.456,43.395)
C4': (-108.992,-52.152,43.667)
C2': (-106.871,-53.066,44.077)
C2: (-102.586,-51.688,43.154)
N1: (-102.158,-50.529,42.682)
N3: (-103.800,-52.178,43.132)
N6: (-102.604,-48.504,41.611)
N7: (-105.452,-49.456,41.500)
N9: (-106.004,-51.459,42.373)
O5': (-109.341,-49.941,43.001)
O3': (-108.459,-52.819,45.926)
OP2: (-108.471,-47.956,44.222)
C3': (-107.947,-52.244,44.744)
C1': (-106.942,-52.548,42.653)
C5': (-109.886,-50.978,43.752)
O4': (-108.229,-52.051,42.451)
C8: (-106.408,-50.320,41.719)
O2': (-107.244,-54.429,44.063)
C6: (-103.023,-49.682,42.097)
C5: (-104.343,-50.088,42.025)
C4: (-104.648,-51.326,42.552)
P: (-109.594,-48.456,43.395)
C4': (-108.992,-52.152,43.667)
C2': (-106.871,-53.066,44.077)
C2: (-102.586,-51.688,43.154)
N1: (-102.158,-50.529,42.682)
N3: (-103.800,-52.178,43.132)
N6: (-102.604,-48.504,41.611)
N7: (-105.452,-49.456,41.500)
N9: (-106.004,-51.459,42.373)
O5': (-109.341,-49.941,43.001)
O3': (-108.459,-52.819,45.926)
C2: (-103.516,-45.853,39.591)
OP1: (-103.278,-39.292,35.298)
OP2: (-102.514,-40.210,33.016)
C4: (-105.804,-45.956,39.951)
O5': (-104.100,-41.547,34.455)
C3': (-103.005,-44.306,35.671)
C1': (-102.528,-44.274,37.981)
O4': (-102.858,-42.970,37.594)
C5': (-104.132,-41.994,35.806)
P: (-103.561,-40.091,34.064)
O2: (-102.400,-46.255,39.852)
C4': (-102.947,-42.867,36.154)
C2': (-102.181,-45.048,36.714)
O2': (-100.786,-44.921,36.470)
N1: (-103.687,-44.847,38.678)
N3: (-104.574,-46.383,40.204)
N4: (-106.826,-46.541,40.603)
C6: (-104.931,-44.403,38.407)
C5: (-106.005,-44.920,39.004)
O3': (-102.525,-44.461,34.359)
OP1: (-103.278,-39.292,35.298)
OP2: (-102.514,-40.210,33.016)
C4: (-105.804,-45.956,39.951)
O5': (-104.100,-41.547,34.455)
C3': (-103.005,-44.306,35.671)
C1': (-102.528,-44.274,37.981)
O4': (-102.858,-42.970,37.594)
C5': (-104.132,-41.994,35.806)
P: (-103.561,-40.091,34.064)
O2: (-102.400,-46.255,39.852)
C4': (-102.947,-42.867,36.154)
C2': (-102.181,-45.048,36.714)
O2': (-100.786,-44.921,36.470)
N1: (-103.687,-44.847,38.678)
N3: (-104.574,-46.383,40.204)
N4: (-106.826,-46.541,40.603)
C6: (-104.931,-44.403,38.407)
C5: (-106.005,-44.920,39.004)
O3': (-102.525,-44.461,34.359)
Image (generated by PyMOL):