ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2QUX:I12:I13

Extra

PDB:
ATOM 1 O3' U A 11 -54.787 -5.794 2.910 1.00 42.42 O
ATOM 2 P A A 12 -54.153 -4.402 2.453 1.00 37.92 P
ATOM 3 OP1 A A 12 -53.020 -4.643 1.533 1.00 48.39 O
ATOM 4 OP2 A A 12 -53.873 -3.586 3.634 1.00 40.71 O
ATOM 5 O5' A A 12 -55.361 -3.799 1.599 1.00 40.40 O
ATOM 6 C5' A A 12 -56.702 -3.645 2.034 1.00 41.26 C
ATOM 7 C4' A A 12 -57.648 -3.998 0.895 1.00 40.30 C
ATOM 8 O4' A A 12 -57.290 -5.299 0.407 1.00 37.81 O
ATOM 9 C3' A A 12 -59.136 -4.101 1.237 1.00 46.67 C
ATOM 10 O3' A A 12 -59.930 -3.603 0.166 1.00 62.14 O
ATOM 11 C2' A A 12 -59.344 -5.590 1.376 1.00 38.55 C
ATOM 12 O2' A A 12 -60.698 -5.990 1.222 1.00 36.82 O
ATOM 13 C1' A A 12 -58.448 -6.058 0.226 1.00 37.51 C
ATOM 14 N9 A A 12 -58.215 -7.477 0.390 1.00 30.74 N
ATOM 15 C8 A A 12 -57.370 -8.054 1.293 1.00 27.38 C
ATOM 16 N7 A A 12 -57.400 -9.365 1.273 1.00 31.86 N
ATOM 17 C5 A A 12 -58.345 -9.657 0.294 1.00 31.00 C
ATOM 18 C6 A A 12 -58.844 -10.881 -0.186 1.00 25.30 C
ATOM 19 N6 A A 12 -58.392 -12.047 0.288 1.00 29.99 N
ATOM 20 N1 A A 12 -59.776 -10.845 -1.183 1.00 34.06 N
ATOM 21 C2 A A 12 -60.197 -9.643 -1.635 1.00 35.48 C
ATOM 22 N3 A A 12 -59.800 -8.417 -1.249 1.00 31.94 N
ATOM 23 C4 A A 12 -58.871 -8.500 -0.265 1.00 33.37 C
ATOM 24 P U A 13 -60.562 -2.139 0.132 1.00 57.24 P
ATOM 25 OP1 U A 13 -59.635 -1.172 0.769 1.00 60.01 O
ATOM 26 OP2 U A 13 -61.934 -2.321 0.650 1.00 52.09 O
ATOM 27 O5' U A 13 -60.513 -1.817 -1.438 1.00 56.02 O
TER

ATOM 1 O3' A B 12 -59.930 -3.603 0.166 1.00 62.14 O
ATOM 2 P U B 13 -60.562 -2.139 0.132 1.00 57.24 P
ATOM 3 OP1 U B 13 -59.635 -1.172 0.769 1.00 60.01 O
ATOM 4 OP2 U B 13 -61.934 -2.321 0.650 1.00 52.09 O
ATOM 5 O5' U B 13 -60.513 -1.817 -1.438 1.00 56.02 O
ATOM 6 C5' U B 13 -61.632 -1.695 -2.316 1.00 65.46 C
ATOM 7 C4' U B 13 -61.443 -0.600 -3.371 1.00 75.84 C
ATOM 8 O4' U B 13 -62.128 0.593 -2.904 1.00 78.62 O
ATOM 9 C3' U B 13 -60.031 -0.116 -3.742 1.00 74.78 C
ATOM 10 O3' U B 13 -59.421 -0.916 -4.757 1.00 72.24 O
ATOM 11 C2' U B 13 -60.323 1.297 -4.232 1.00 88.80 C
ATOM 12 O2' U B 13 -60.761 1.322 -5.578 1.00 80.04 O
ATOM 13 C1' U B 13 -61.438 1.760 -3.295 1.00 95.75 C
ATOM 14 N1 U B 13 -60.926 2.531 -2.086 1.00101.59 N
ATOM 15 C2 U B 13 -61.032 3.919 -2.042 1.00114.22 C
ATOM 16 O2 U B 13 -61.533 4.601 -2.920 1.00113.90 O
ATOM 17 N3 U B 13 -60.525 4.509 -0.902 1.00112.24 N
ATOM 18 C4 U B 13 -59.929 3.875 0.179 1.00106.55 C
ATOM 19 O4 U B 13 -59.519 4.526 1.130 1.00102.22 O
ATOM 20 C5 U B 13 -59.847 2.444 0.070 1.00103.85 C
ATOM 21 C6 U B 13 -60.331 1.849 -1.028 1.00104.69 C
ATOM 22 P G B 14 -58.019 -0.618 -5.337 1.00 63.53 P
ATOM 23 OP1 G B 14 -57.052 -0.343 -4.322 1.00 80.26 O
ATOM 24 OP2 G B 14 -58.210 0.291 -6.412 1.00 70.24 O
ATOM 25 O5' G B 14 -57.604 -1.970 -5.952 1.00 65.94 O
TER

Atoms:
OP1: (-53.020,-4.643,1.533)
OP2: (-53.873,-3.586,3.634)
C3': (-59.136,-4.101,1.237)
C1': (-58.448,-6.058,0.226)
C5': (-56.702,-3.645,2.034)
O4': (-57.290,-5.299,0.407)
C8: (-57.370,-8.054,1.293)
O2': (-60.698,-5.990,1.222)
C6: (-58.844,-10.881,-0.186)
C5: (-58.345,-9.657,0.294)
C4: (-58.871,-8.500,-0.265)
P: (-54.153,-4.402,2.453)
C4': (-57.648,-3.998,0.895)
C2': (-59.344,-5.590,1.376)
C2: (-60.197,-9.643,-1.635)
N1: (-59.776,-10.845,-1.183)
N3: (-59.800,-8.417,-1.249)
N6: (-58.392,-12.047,0.288)
N7: (-57.400,-9.365,1.273)
N9: (-58.215,-7.477,0.390)
O5': (-55.361,-3.799,1.599)
O3': (-59.930,-3.603,0.166)
C4: (-59.929,3.875,0.179)
N3: (-60.525,4.509,-0.902)
OP1: (-59.635,-1.172,0.769)
OP2: (-61.934,-2.321,0.650)
C2: (-61.032,3.919,-2.042)
C1': (-61.438,1.760,-3.295)
C3': (-60.031,-0.116,-3.742)
O5': (-60.513,-1.817,-1.438)
O4': (-62.128,0.593,-2.904)
C5': (-61.632,-1.695,-2.316)
P: (-60.562,-2.139,0.132)
C4': (-61.443,-0.600,-3.371)
C2': (-60.323,1.297,-4.232)
O2': (-60.761,1.322,-5.578)
N1: (-60.926,2.531,-2.086)
O4: (-59.519,4.526,1.130)
O2: (-61.533,4.601,-2.920)
C6: (-60.331,1.849,-1.028)
C5: (-59.847,2.444,0.070)
O3': (-59.421,-0.916,-4.757)
Image (generated by PyMOL):
PyMOL image
show in jmol