ClaRNA

Doublet info:

Details

Nucleotide types: GG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:01199:02025

Extra

PDB:
ATOM 1 O3' G A1198 34.919 112.866 120.991 1.00 41.76 O
ATOM 2 P G A1199 34.689 112.952 122.575 1.00 41.46 P
ATOM 3 OP1 G A1199 35.989 113.291 123.190 1.00 41.47 O
ATOM 4 OP2 G A1199 33.957 111.728 123.011 1.00 37.35 O
ATOM 5 O5' G A1199 33.762 114.227 122.748 1.00 38.89 O
ATOM 6 C5' G A1199 34.254 115.533 122.426 1.00 37.99 C
ATOM 7 C4' G A1199 33.152 116.541 122.565 1.00 38.38 C
ATOM 8 O4' G A1199 32.116 116.232 121.599 1.00 39.75 O
ATOM 9 C3' G A1199 32.426 116.525 123.899 1.00 39.08 C
ATOM 10 O3' G A1199 33.107 117.270 124.898 1.00 40.97 O
ATOM 11 C2' G A1199 31.083 117.120 123.515 1.00 39.49 C
ATOM 12 O2' G A1199 31.174 118.517 123.287 1.00 38.59 O
ATOM 13 C1' G A1199 30.837 116.403 122.189 1.00 38.26 C
ATOM 14 N9 G A1199 30.257 115.075 122.387 1.00 37.46 N
ATOM 15 C8 G A1199 30.921 113.878 122.355 1.00 36.67 C
ATOM 16 N7 G A1199 30.148 112.856 122.589 1.00 38.59 N
ATOM 17 C5 G A1199 28.893 113.409 122.783 1.00 39.00 C
ATOM 18 C6 G A1199 27.652 112.789 123.084 1.00 40.83 C
ATOM 19 O6 G A1199 27.406 111.582 123.236 1.00 41.90 O
ATOM 20 N1 G A1199 26.633 113.725 123.213 1.00 40.89 N
ATOM 21 C2 G A1199 26.785 115.082 123.068 1.00 41.41 C
ATOM 22 N2 G A1199 25.688 115.829 123.243 1.00 41.93 N
ATOM 23 N3 G A1199 27.932 115.668 122.779 1.00 41.60 N
ATOM 24 C4 G A1199 28.940 114.778 122.656 1.00 39.30 C
ATOM 25 P G A1200 32.830 116.961 126.447 1.00 41.02 P
ATOM 26 OP1 G A1200 33.608 117.947 127.237 1.00 41.73 O
ATOM 27 OP2 G A1200 33.016 115.517 126.689 1.00 38.28 O
ATOM 28 O5' G A1200 31.281 117.279 126.633 1.00 41.79 O
TER

ATOM 1 O3' U B2024 31.620 115.357 111.994 1.00 41.52 O
ATOM 2 P G B2025 30.792 116.545 112.693 1.00 44.16 P
ATOM 3 OP1 G B2025 29.446 115.967 112.936 1.00 45.02 O
ATOM 4 OP2 G B2025 30.922 117.813 111.924 1.00 42.55 O
ATOM 5 O5' G B2025 31.515 116.731 114.096 1.00 42.07 O
ATOM 6 C5' G B2025 31.637 115.617 114.989 1.00 41.47 C
ATOM 7 C4' G B2025 32.501 115.980 116.162 1.00 40.12 C
ATOM 8 O4' G B2025 33.879 116.166 115.762 1.00 39.02 O
ATOM 9 C3' G B2025 32.138 117.290 116.806 1.00 39.79 C
ATOM 10 O3' G B2025 31.012 117.068 117.627 1.00 42.60 O
ATOM 11 C2' G B2025 33.408 117.619 117.569 1.00 38.72 C
ATOM 12 O2' G B2025 33.522 116.819 118.724 1.00 37.84 O
ATOM 13 C1' G B2025 34.476 117.150 116.579 1.00 39.08 C
ATOM 14 N9 G B2025 35.027 118.191 115.717 1.00 39.87 N
ATOM 15 C8 G B2025 34.592 118.547 114.464 1.00 40.05 C
ATOM 16 N7 G B2025 35.303 119.504 113.928 1.00 40.15 N
ATOM 17 C5 G B2025 36.262 119.801 114.885 1.00 39.95 C
ATOM 18 C6 G B2025 37.308 120.754 114.869 1.00 40.71 C
ATOM 19 O6 G B2025 37.610 121.549 113.975 1.00 43.33 O
ATOM 20 N1 G B2025 38.042 120.731 116.049 1.00 39.27 N
ATOM 21 C2 G B2025 37.801 119.899 117.106 1.00 38.64 C
ATOM 22 N2 G B2025 38.606 120.038 118.153 1.00 38.54 N
ATOM 23 N3 G B2025 36.836 118.999 117.134 1.00 39.10 N
ATOM 24 C4 G B2025 36.106 119.005 115.997 1.00 39.83 C
ATOM 25 P G B2026 30.105 118.304 118.088 1.00 43.95 P
ATOM 26 OP1 G B2026 28.818 117.674 118.507 1.00 44.29 O
ATOM 27 OP2 G B2026 30.102 119.370 117.040 1.00 42.45 O
ATOM 28 O5' G B2026 30.870 118.835 119.378 1.00 41.59 O
TER

Atoms:
OP1: (35.989,113.291,123.190)
OP2: (33.957,111.728,123.011)
C3': (32.426,116.525,123.899)
C1': (30.837,116.403,122.189)
C5': (34.254,115.533,122.426)
O6: (27.406,111.582,123.236)
O4': (32.116,116.232,121.599)
C8: (30.921,113.878,122.355)
C2: (26.785,115.082,123.068)
C6: (27.652,112.789,123.084)
C5: (28.893,113.409,122.783)
C4: (28.940,114.778,122.656)
P: (34.689,112.952,122.575)
C4': (33.152,116.541,122.565)
C2': (31.083,117.120,123.515)
O2': (31.174,118.517,123.287)
N1: (26.633,113.725,123.213)
N2: (25.688,115.829,123.243)
N3: (27.932,115.668,122.779)
N7: (30.148,112.856,122.589)
N9: (30.257,115.075,122.387)
O5': (33.762,114.227,122.748)
O3': (33.107,117.270,124.898)
OP1: (29.446,115.967,112.936)
OP2: (30.922,117.813,111.924)
C3': (32.138,117.290,116.806)
C1': (34.476,117.150,116.579)
C5': (31.637,115.617,114.989)
O6: (37.610,121.549,113.975)
O4': (33.879,116.166,115.762)
C8: (34.592,118.547,114.464)
C2: (37.801,119.899,117.106)
C6: (37.308,120.754,114.869)
C5: (36.262,119.801,114.885)
C4: (36.106,119.005,115.997)
P: (30.792,116.545,112.693)
C4': (32.501,115.980,116.162)
C2': (33.408,117.619,117.569)
O2': (33.522,116.819,118.724)
N1: (38.042,120.731,116.049)
N2: (38.606,120.038,118.153)
N3: (36.836,118.999,117.134)
N7: (35.303,119.504,113.928)
N9: (35.027,118.191,115.717)
O5': (31.515,116.731,114.096)
O3': (31.012,117.068,117.627)
Image (generated by PyMOL):
PyMOL image
show in jmol