ClaRNA

Doublet info:

Details

Nucleotide types: GG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:01199:02025

Extra

PDB:
ATOM 1 O3' G A1198 34.774 112.634 120.621 1.00 41.73 O
ATOM 2 P G A1199 34.531 112.663 122.200 1.00 42.53 P
ATOM 3 OP1 G A1199 35.859 112.895 122.810 1.00 43.58 O
ATOM 4 OP2 G A1199 33.742 111.456 122.570 1.00 39.15 O
ATOM 5 O5' G A1199 33.640 113.957 122.433 1.00 38.00 O
ATOM 6 C5' G A1199 34.161 115.253 122.154 1.00 36.47 C
ATOM 7 C4' G A1199 33.052 116.263 122.170 1.00 37.07 C
ATOM 8 O4' G A1199 32.071 115.895 121.167 1.00 37.00 O
ATOM 9 C3' G A1199 32.252 116.339 123.457 1.00 37.07 C
ATOM 10 O3' G A1199 32.877 117.147 124.442 1.00 38.64 O
ATOM 11 C2' G A1199 30.937 116.912 122.962 1.00 37.29 C
ATOM 12 O2' G A1199 31.048 118.291 122.662 1.00 35.23 O
ATOM 13 C1' G A1199 30.760 116.117 121.667 1.00 36.67 C
ATOM 14 N9 G A1199 30.148 114.807 121.893 1.00 35.14 N
ATOM 15 C8 G A1199 30.782 113.592 121.841 1.00 35.08 C
ATOM 16 N7 G A1199 29.994 112.589 122.096 1.00 35.61 N
ATOM 17 C5 G A1199 28.759 113.173 122.330 1.00 35.70 C
ATOM 18 C6 G A1199 27.511 112.580 122.668 1.00 37.20 C
ATOM 19 O6 G A1199 27.241 111.380 122.830 1.00 35.60 O
ATOM 20 N1 G A1199 26.520 113.539 122.826 1.00 37.74 N
ATOM 21 C2 G A1199 26.701 114.892 122.683 1.00 38.22 C
ATOM 22 N2 G A1199 25.617 115.660 122.888 1.00 39.96 N
ATOM 23 N3 G A1199 27.857 115.455 122.367 1.00 37.00 N
ATOM 24 C4 G A1199 28.836 114.543 122.208 1.00 34.92 C
ATOM 25 P G A1200 32.587 116.864 125.994 1.00 38.39 P
ATOM 26 OP1 G A1200 33.318 117.881 126.790 1.00 36.52 O
ATOM 27 OP2 G A1200 32.811 115.423 126.259 1.00 35.17 O
ATOM 28 O5' G A1200 31.031 117.164 126.125 1.00 38.68 O
TER

ATOM 1 O3' U B2024 31.593 115.092 111.610 1.00 41.59 O
ATOM 2 P G B2025 30.767 116.263 112.340 1.00 43.47 P
ATOM 3 OP1 G B2025 29.396 115.725 112.545 1.00 42.73 O
ATOM 4 OP2 G B2025 30.946 117.548 111.611 1.00 42.52 O
ATOM 5 O5' G B2025 31.486 116.382 113.752 1.00 40.94 O
ATOM 6 C5' G B2025 31.573 115.240 114.622 1.00 41.37 C
ATOM 7 C4' G B2025 32.328 115.596 115.870 1.00 38.99 C
ATOM 8 O4' G B2025 33.733 115.765 115.573 1.00 38.22 O
ATOM 9 C3' G B2025 31.916 116.922 116.459 1.00 39.59 C
ATOM 10 O3' G B2025 30.729 116.775 117.208 1.00 41.52 O
ATOM 11 C2' G B2025 33.141 117.306 117.270 1.00 38.85 C
ATOM 12 O2' G B2025 33.230 116.572 118.471 1.00 39.62 O
ATOM 13 C1' G B2025 34.259 116.837 116.339 1.00 39.39 C
ATOM 14 N9 G B2025 34.753 117.855 115.413 1.00 40.28 N
ATOM 15 C8 G B2025 34.272 118.119 114.153 1.00 39.76 C
ATOM 16 N7 G B2025 34.945 119.046 113.531 1.00 40.44 N
ATOM 17 C5 G B2025 35.925 119.431 114.436 1.00 39.95 C
ATOM 18 C6 G B2025 36.955 120.399 114.315 1.00 39.26 C
ATOM 19 O6 G B2025 37.213 121.129 113.356 1.00 39.36 O
ATOM 20 N1 G B2025 37.725 120.476 115.469 1.00 38.84 N
ATOM 21 C2 G B2025 37.528 119.729 116.598 1.00 38.52 C
ATOM 22 N2 G B2025 38.371 119.965 117.610 1.00 35.43 N
ATOM 23 N3 G B2025 36.572 118.818 116.726 1.00 39.68 N
ATOM 24 C4 G B2025 35.813 118.720 115.611 1.00 40.12 C
ATOM 25 P G B2026 29.960 118.075 117.738 1.00 43.75 P
ATOM 26 OP1 G B2026 28.715 117.555 118.375 1.00 43.20 O
ATOM 27 OP2 G B2026 29.865 119.105 116.660 1.00 41.17 O
ATOM 28 O5' G B2026 30.936 118.617 118.870 1.00 41.70 O
TER

Atoms:
OP1: (35.859,112.895,122.810)
OP2: (33.742,111.456,122.570)
C3': (32.252,116.339,123.457)
C1': (30.760,116.117,121.667)
C5': (34.161,115.253,122.154)
O6: (27.241,111.380,122.830)
O4': (32.071,115.895,121.167)
C8: (30.782,113.592,121.841)
C2: (26.701,114.892,122.683)
C6: (27.511,112.580,122.668)
C5: (28.759,113.173,122.330)
C4: (28.836,114.543,122.208)
P: (34.531,112.663,122.200)
C4': (33.052,116.263,122.170)
C2': (30.937,116.912,122.962)
O2': (31.048,118.291,122.662)
N1: (26.520,113.539,122.826)
N2: (25.617,115.660,122.888)
N3: (27.857,115.455,122.367)
N7: (29.994,112.589,122.096)
N9: (30.148,114.807,121.893)
O5': (33.640,113.957,122.433)
O3': (32.877,117.147,124.442)
OP1: (29.396,115.725,112.545)
OP2: (30.946,117.548,111.611)
C3': (31.916,116.922,116.459)
C1': (34.259,116.837,116.339)
C5': (31.573,115.240,114.622)
O6: (37.213,121.129,113.356)
O4': (33.733,115.765,115.573)
C8: (34.272,118.119,114.153)
C2: (37.528,119.729,116.598)
C6: (36.955,120.399,114.315)
C5: (35.925,119.431,114.436)
C4: (35.813,118.720,115.611)
P: (30.767,116.263,112.340)
C4': (32.328,115.596,115.870)
C2': (33.141,117.306,117.270)
O2': (33.230,116.572,118.471)
N1: (37.725,120.476,115.469)
N2: (38.371,119.965,117.610)
N3: (36.572,118.818,116.726)
N7: (34.945,119.046,113.531)
N9: (34.753,117.855,115.413)
O5': (31.486,116.382,113.752)
O3': (30.729,116.775,117.208)
Image (generated by PyMOL):
PyMOL image
show in jmol