Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12116:12117
Extra
PDB:
ATOM 1 O3' C A2115 -7.755 -9.768 67.657 1.00 56.44 O
ATOM 2 P A A2116 -7.691 -10.460 69.108 1.00 60.60 P
ATOM 3 OP1 A A2116 -6.292 -10.959 69.284 1.00 60.29 O
ATOM 4 OP2 A A2116 -8.835 -11.412 69.185 1.00 60.86 O
ATOM 5 O5' A A2116 -7.930 -9.248 70.104 1.00 60.66 O
ATOM 6 C5' A A2116 -8.092 -9.468 71.496 1.00 60.69 C
ATOM 7 C4' A A2116 -7.487 -8.352 72.299 1.00 60.58 C
ATOM 8 O4' A A2116 -6.052 -8.480 72.282 1.00 60.26 O
ATOM 9 C3' A A2116 -7.792 -6.954 71.806 1.00 60.68 C
ATOM 10 O3' A A2116 -7.984 -6.117 72.916 1.00 60.76 O
ATOM 11 C2' A A2116 -6.545 -6.546 71.075 1.00 60.41 C
ATOM 12 O2' A A2116 -6.316 -5.166 71.073 1.00 60.41 O
ATOM 13 C1' A A2116 -5.464 -7.282 71.845 1.00 60.16 C
ATOM 14 N9 A A2116 -4.327 -7.633 71.013 1.00 59.90 N
ATOM 15 C8 A A2116 -4.372 -8.591 70.034 1.00 59.89 C
ATOM 16 N7 A A2116 -3.251 -8.695 69.393 1.00 59.66 N
ATOM 17 C5 A A2116 -2.452 -7.730 69.985 1.00 59.51 C
ATOM 18 C6 A A2116 -1.119 -7.363 69.743 1.00 59.26 C
ATOM 19 N6 A A2116 -0.398 -7.964 68.787 1.00 59.11 N
ATOM 20 N1 A A2116 -0.581 -6.375 70.508 1.00 59.18 N
ATOM 21 C2 A A2116 -1.372 -5.819 71.438 1.00 59.36 C
ATOM 22 N3 A A2116 -2.640 -6.100 71.756 1.00 59.60 N
ATOM 23 C4 A A2116 -3.108 -7.073 70.989 1.00 59.66 C
ATOM 24 P U A2117 -9.450 -6.033 73.526 1.00 51.90 P
ATOM 25 OP1 U A2117 -9.602 -7.180 74.418 1.00 51.91 O
ATOM 26 OP2 U A2117 -10.381 -5.876 72.377 1.00 52.12 O
ATOM 27 O5' U A2117 -9.449 -4.707 74.357 1.00 51.97 O
TER
ATOM 1 O3' A B2116 -7.984 -6.117 72.916 1.00 60.76 O
ATOM 2 P U B2117 -9.450 -6.033 73.526 1.00 51.90 P
ATOM 3 OP1 U B2117 -9.602 -7.180 74.418 1.00 51.91 O
ATOM 4 OP2 U B2117 -10.381 -5.876 72.377 1.00 52.12 O
ATOM 5 O5' U B2117 -9.449 -4.707 74.357 1.00 51.97 O
ATOM 6 C5' U B2117 -8.541 -4.481 75.386 1.00 51.80 C
ATOM 7 C4' U B2117 -9.008 -3.322 76.165 1.00 51.99 C
ATOM 8 O4' U B2117 -10.166 -2.758 75.509 1.00 52.27 O
ATOM 9 C3' U B2117 -9.490 -3.680 77.513 1.00 52.13 C
ATOM 10 O3' U B2117 -8.436 -3.739 78.426 1.00 51.92 O
ATOM 11 C2' U B2117 -10.547 -2.630 77.810 1.00 52.45 C
ATOM 12 O2' U B2117 -9.952 -1.409 78.183 1.00 52.40 O
ATOM 13 C1' U B2117 -11.155 -2.446 76.442 1.00 52.55 C
ATOM 14 N1 U B2117 -12.338 -3.333 76.201 1.00 52.78 N
ATOM 15 C2 U B2117 -13.439 -3.226 77.023 1.00 53.08 C
ATOM 16 O2 U B2117 -13.500 -2.483 77.978 1.00 53.18 O
ATOM 17 N3 U B2117 -14.483 -4.028 76.716 1.00 53.29 N
ATOM 18 C4 U B2117 -14.615 -4.910 75.689 1.00 53.25 C
ATOM 19 O4 U B2117 -15.681 -5.545 75.614 1.00 53.50 O
ATOM 20 C5 U B2117 -13.472 -4.981 74.848 1.00 52.94 C
ATOM 21 C6 U B2117 -12.420 -4.207 75.130 1.00 52.72 C
ATOM 22 P G B2118 -8.366 -4.947 79.427 1.00 46.92 P
ATOM 23 OP1 G B2118 -7.156 -4.742 80.252 1.00 46.71 O
ATOM 24 OP2 G B2118 -8.517 -6.202 78.633 1.00 46.86 O
ATOM 25 O5' G B2118 -9.659 -4.716 80.317 1.00 47.27 O
TER
ATOM 2 P A A2116 -7.691 -10.460 69.108 1.00 60.60 P
ATOM 3 OP1 A A2116 -6.292 -10.959 69.284 1.00 60.29 O
ATOM 4 OP2 A A2116 -8.835 -11.412 69.185 1.00 60.86 O
ATOM 5 O5' A A2116 -7.930 -9.248 70.104 1.00 60.66 O
ATOM 6 C5' A A2116 -8.092 -9.468 71.496 1.00 60.69 C
ATOM 7 C4' A A2116 -7.487 -8.352 72.299 1.00 60.58 C
ATOM 8 O4' A A2116 -6.052 -8.480 72.282 1.00 60.26 O
ATOM 9 C3' A A2116 -7.792 -6.954 71.806 1.00 60.68 C
ATOM 10 O3' A A2116 -7.984 -6.117 72.916 1.00 60.76 O
ATOM 11 C2' A A2116 -6.545 -6.546 71.075 1.00 60.41 C
ATOM 12 O2' A A2116 -6.316 -5.166 71.073 1.00 60.41 O
ATOM 13 C1' A A2116 -5.464 -7.282 71.845 1.00 60.16 C
ATOM 14 N9 A A2116 -4.327 -7.633 71.013 1.00 59.90 N
ATOM 15 C8 A A2116 -4.372 -8.591 70.034 1.00 59.89 C
ATOM 16 N7 A A2116 -3.251 -8.695 69.393 1.00 59.66 N
ATOM 17 C5 A A2116 -2.452 -7.730 69.985 1.00 59.51 C
ATOM 18 C6 A A2116 -1.119 -7.363 69.743 1.00 59.26 C
ATOM 19 N6 A A2116 -0.398 -7.964 68.787 1.00 59.11 N
ATOM 20 N1 A A2116 -0.581 -6.375 70.508 1.00 59.18 N
ATOM 21 C2 A A2116 -1.372 -5.819 71.438 1.00 59.36 C
ATOM 22 N3 A A2116 -2.640 -6.100 71.756 1.00 59.60 N
ATOM 23 C4 A A2116 -3.108 -7.073 70.989 1.00 59.66 C
ATOM 24 P U A2117 -9.450 -6.033 73.526 1.00 51.90 P
ATOM 25 OP1 U A2117 -9.602 -7.180 74.418 1.00 51.91 O
ATOM 26 OP2 U A2117 -10.381 -5.876 72.377 1.00 52.12 O
ATOM 27 O5' U A2117 -9.449 -4.707 74.357 1.00 51.97 O
TER
ATOM 1 O3' A B2116 -7.984 -6.117 72.916 1.00 60.76 O
ATOM 2 P U B2117 -9.450 -6.033 73.526 1.00 51.90 P
ATOM 3 OP1 U B2117 -9.602 -7.180 74.418 1.00 51.91 O
ATOM 4 OP2 U B2117 -10.381 -5.876 72.377 1.00 52.12 O
ATOM 5 O5' U B2117 -9.449 -4.707 74.357 1.00 51.97 O
ATOM 6 C5' U B2117 -8.541 -4.481 75.386 1.00 51.80 C
ATOM 7 C4' U B2117 -9.008 -3.322 76.165 1.00 51.99 C
ATOM 8 O4' U B2117 -10.166 -2.758 75.509 1.00 52.27 O
ATOM 9 C3' U B2117 -9.490 -3.680 77.513 1.00 52.13 C
ATOM 10 O3' U B2117 -8.436 -3.739 78.426 1.00 51.92 O
ATOM 11 C2' U B2117 -10.547 -2.630 77.810 1.00 52.45 C
ATOM 12 O2' U B2117 -9.952 -1.409 78.183 1.00 52.40 O
ATOM 13 C1' U B2117 -11.155 -2.446 76.442 1.00 52.55 C
ATOM 14 N1 U B2117 -12.338 -3.333 76.201 1.00 52.78 N
ATOM 15 C2 U B2117 -13.439 -3.226 77.023 1.00 53.08 C
ATOM 16 O2 U B2117 -13.500 -2.483 77.978 1.00 53.18 O
ATOM 17 N3 U B2117 -14.483 -4.028 76.716 1.00 53.29 N
ATOM 18 C4 U B2117 -14.615 -4.910 75.689 1.00 53.25 C
ATOM 19 O4 U B2117 -15.681 -5.545 75.614 1.00 53.50 O
ATOM 20 C5 U B2117 -13.472 -4.981 74.848 1.00 52.94 C
ATOM 21 C6 U B2117 -12.420 -4.207 75.130 1.00 52.72 C
ATOM 22 P G B2118 -8.366 -4.947 79.427 1.00 46.92 P
ATOM 23 OP1 G B2118 -7.156 -4.742 80.252 1.00 46.71 O
ATOM 24 OP2 G B2118 -8.517 -6.202 78.633 1.00 46.86 O
ATOM 25 O5' G B2118 -9.659 -4.716 80.317 1.00 47.27 O
TER
Atoms:
OP1: (-6.292,-10.959,69.284)
OP2: (-8.835,-11.412,69.185)
C3': (-7.792,-6.954,71.806)
C1': (-5.464,-7.282,71.845)
C5': (-8.092,-9.468,71.496)
O4': (-6.052,-8.480,72.282)
C8: (-4.372,-8.591,70.034)
O2': (-6.316,-5.166,71.073)
C6: (-1.119,-7.363,69.743)
C5: (-2.452,-7.730,69.985)
C4: (-3.108,-7.073,70.989)
P: (-7.691,-10.460,69.108)
C4': (-7.487,-8.352,72.299)
C2': (-6.545,-6.546,71.075)
C2: (-1.372,-5.819,71.438)
N1: (-0.581,-6.375,70.508)
N3: (-2.640,-6.100,71.756)
N6: (-0.398,-7.964,68.787)
N7: (-3.251,-8.695,69.393)
N9: (-4.327,-7.633,71.013)
O5': (-7.930,-9.248,70.104)
O3': (-7.984,-6.117,72.916)
OP2: (-8.835,-11.412,69.185)
C3': (-7.792,-6.954,71.806)
C1': (-5.464,-7.282,71.845)
C5': (-8.092,-9.468,71.496)
O4': (-6.052,-8.480,72.282)
C8: (-4.372,-8.591,70.034)
O2': (-6.316,-5.166,71.073)
C6: (-1.119,-7.363,69.743)
C5: (-2.452,-7.730,69.985)
C4: (-3.108,-7.073,70.989)
P: (-7.691,-10.460,69.108)
C4': (-7.487,-8.352,72.299)
C2': (-6.545,-6.546,71.075)
C2: (-1.372,-5.819,71.438)
N1: (-0.581,-6.375,70.508)
N3: (-2.640,-6.100,71.756)
N6: (-0.398,-7.964,68.787)
N7: (-3.251,-8.695,69.393)
N9: (-4.327,-7.633,71.013)
O5': (-7.930,-9.248,70.104)
O3': (-7.984,-6.117,72.916)
C4: (-14.615,-4.910,75.689)
N3: (-14.483,-4.028,76.716)
OP1: (-9.602,-7.180,74.418)
OP2: (-10.381,-5.876,72.377)
C2: (-13.439,-3.226,77.023)
C1': (-11.155,-2.446,76.442)
C3': (-9.490,-3.680,77.513)
O5': (-9.449,-4.707,74.357)
O4': (-10.166,-2.758,75.509)
C5': (-8.541,-4.481,75.386)
P: (-9.450,-6.033,73.526)
C4': (-9.008,-3.322,76.165)
C2': (-10.547,-2.630,77.810)
O2': (-9.952,-1.409,78.183)
N1: (-12.338,-3.333,76.201)
O4: (-15.681,-5.545,75.614)
O2: (-13.500,-2.483,77.978)
C6: (-12.420,-4.207,75.130)
C5: (-13.472,-4.981,74.848)
O3': (-8.436,-3.739,78.426)
N3: (-14.483,-4.028,76.716)
OP1: (-9.602,-7.180,74.418)
OP2: (-10.381,-5.876,72.377)
C2: (-13.439,-3.226,77.023)
C1': (-11.155,-2.446,76.442)
C3': (-9.490,-3.680,77.513)
O5': (-9.449,-4.707,74.357)
O4': (-10.166,-2.758,75.509)
C5': (-8.541,-4.481,75.386)
P: (-9.450,-6.033,73.526)
C4': (-9.008,-3.322,76.165)
C2': (-10.547,-2.630,77.810)
O2': (-9.952,-1.409,78.183)
N1: (-12.338,-3.333,76.201)
O4: (-15.681,-5.545,75.614)
O2: (-13.500,-2.483,77.978)
C6: (-12.420,-4.207,75.130)
C5: (-13.472,-4.981,74.848)
O3': (-8.436,-3.739,78.426)
Image (generated by PyMOL):