Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DH3:H6:H5
Extra
PDB:
ATOM 1 O3' G A 5 12.148 -4.790 -1.008 1.00 34.88 O
ATOM 2 P U A 6 11.862 -4.671 0.572 1.00 38.32 P
ATOM 3 OP1 U A 6 12.073 -3.203 0.825 1.00 36.11 O
ATOM 4 OP2 U A 6 12.720 -5.719 1.247 1.00 35.50 O
ATOM 5 O5' U A 6 10.275 -5.059 0.732 1.00 35.70 O
ATOM 6 C5' U A 6 9.324 -4.152 0.143 1.00 35.75 C
ATOM 7 C4' U A 6 7.938 -4.695 -0.114 1.00 35.79 C
ATOM 8 O4' U A 6 7.909 -5.722 -1.120 1.00 35.18 O
ATOM 9 C3' U A 6 7.351 -5.360 1.100 1.00 37.43 C
ATOM 10 O3' U A 6 6.993 -4.312 2.022 1.00 41.42 O
ATOM 11 C2' U A 6 6.182 -6.139 0.499 1.00 36.39 C
ATOM 12 O2' U A 6 5.018 -5.364 0.157 1.00 35.49 O
ATOM 13 C1' U A 6 6.940 -6.679 -0.708 1.00 35.57 C
ATOM 14 N1 U A 6 7.686 -7.949 -0.468 1.00 35.48 N
ATOM 15 C2 U A 6 7.018 -9.162 -0.411 1.00 35.49 C
ATOM 16 O2 U A 6 5.814 -9.271 -0.537 1.00 36.40 O
ATOM 17 N3 U A 6 7.791 -10.280 -0.216 1.00 34.53 N
ATOM 18 C4 U A 6 9.161 -10.329 -0.105 1.00 35.25 C
ATOM 19 O4 U A 6 9.731 -11.426 0.047 1.00 35.46 O
ATOM 20 C5 U A 6 9.788 -9.023 -0.181 1.00 35.74 C
ATOM 21 C6 U A 6 9.049 -7.917 -0.356 1.00 35.52 C
ATOM 22 P C A 7 6.842 -4.587 3.615 1.00 44.00 P
ATOM 23 OP1 C A 7 6.591 -3.243 4.234 1.00 41.99 O
ATOM 24 OP2 C A 7 7.946 -5.465 4.098 1.00 41.99 O
ATOM 25 O5' C A 7 5.574 -5.568 3.671 1.00 42.51 O
TER
ATOM 1 O3' C B 4 16.930 -8.272 -2.704 1.00 33.80 O
ATOM 2 P G B 5 16.330 -7.872 -1.258 1.00 37.23 P
ATOM 3 OP1 G B 5 17.127 -6.687 -0.794 1.00 35.74 O
ATOM 4 OP2 G B 5 16.260 -9.098 -0.406 1.00 34.25 O
ATOM 5 O5' G B 5 14.830 -7.329 -1.537 1.00 34.53 O
ATOM 6 C5' G B 5 14.651 -6.166 -2.339 1.00 32.49 C
ATOM 7 C4' G B 5 13.200 -6.066 -2.769 1.00 31.95 C
ATOM 8 O4' G B 5 12.770 -7.206 -3.536 1.00 28.81 O
ATOM 9 C3' G B 5 12.219 -6.071 -1.617 1.00 32.35 C
ATOM 10 O3' G B 5 12.148 -4.790 -1.008 1.00 34.88 O
ATOM 11 C2' G B 5 10.890 -6.348 -2.297 1.00 30.79 C
ATOM 12 O2' G B 5 10.230 -5.165 -2.762 1.00 28.70 O
ATOM 13 C1' G B 5 11.373 -7.284 -3.393 1.00 29.27 C
ATOM 14 N9 G B 5 11.108 -8.693 -3.189 1.00 28.50 N
ATOM 15 C8 G B 5 12.028 -9.667 -2.909 1.00 28.56 C
ATOM 16 N7 G B 5 11.509 -10.865 -2.843 1.00 28.21 N
ATOM 17 C5 G B 5 10.177 -10.674 -3.118 1.00 27.32 C
ATOM 18 C6 G B 5 9.146 -11.622 -3.194 1.00 27.92 C
ATOM 19 O6 G B 5 9.184 -12.845 -3.031 1.00 28.24 O
ATOM 20 N1 G B 5 7.935 -11.033 -3.515 1.00 28.42 N
ATOM 21 C2 G B 5 7.740 -9.694 -3.739 1.00 28.45 C
ATOM 22 N2 G B 5 6.470 -9.370 -4.020 1.00 28.09 N
ATOM 23 N3 G B 5 8.709 -8.773 -3.665 1.00 28.79 N
ATOM 24 C4 G B 5 9.904 -9.347 -3.347 1.00 28.21 C
ATOM 25 P U B 6 11.862 -4.671 0.572 1.00 38.32 P
ATOM 26 OP1 U B 6 12.073 -3.203 0.825 1.00 36.11 O
ATOM 27 OP2 U B 6 12.720 -5.719 1.247 1.00 35.50 O
ATOM 28 O5' U B 6 10.275 -5.059 0.732 1.00 35.70 O
TER
ATOM 2 P U A 6 11.862 -4.671 0.572 1.00 38.32 P
ATOM 3 OP1 U A 6 12.073 -3.203 0.825 1.00 36.11 O
ATOM 4 OP2 U A 6 12.720 -5.719 1.247 1.00 35.50 O
ATOM 5 O5' U A 6 10.275 -5.059 0.732 1.00 35.70 O
ATOM 6 C5' U A 6 9.324 -4.152 0.143 1.00 35.75 C
ATOM 7 C4' U A 6 7.938 -4.695 -0.114 1.00 35.79 C
ATOM 8 O4' U A 6 7.909 -5.722 -1.120 1.00 35.18 O
ATOM 9 C3' U A 6 7.351 -5.360 1.100 1.00 37.43 C
ATOM 10 O3' U A 6 6.993 -4.312 2.022 1.00 41.42 O
ATOM 11 C2' U A 6 6.182 -6.139 0.499 1.00 36.39 C
ATOM 12 O2' U A 6 5.018 -5.364 0.157 1.00 35.49 O
ATOM 13 C1' U A 6 6.940 -6.679 -0.708 1.00 35.57 C
ATOM 14 N1 U A 6 7.686 -7.949 -0.468 1.00 35.48 N
ATOM 15 C2 U A 6 7.018 -9.162 -0.411 1.00 35.49 C
ATOM 16 O2 U A 6 5.814 -9.271 -0.537 1.00 36.40 O
ATOM 17 N3 U A 6 7.791 -10.280 -0.216 1.00 34.53 N
ATOM 18 C4 U A 6 9.161 -10.329 -0.105 1.00 35.25 C
ATOM 19 O4 U A 6 9.731 -11.426 0.047 1.00 35.46 O
ATOM 20 C5 U A 6 9.788 -9.023 -0.181 1.00 35.74 C
ATOM 21 C6 U A 6 9.049 -7.917 -0.356 1.00 35.52 C
ATOM 22 P C A 7 6.842 -4.587 3.615 1.00 44.00 P
ATOM 23 OP1 C A 7 6.591 -3.243 4.234 1.00 41.99 O
ATOM 24 OP2 C A 7 7.946 -5.465 4.098 1.00 41.99 O
ATOM 25 O5' C A 7 5.574 -5.568 3.671 1.00 42.51 O
TER
ATOM 1 O3' C B 4 16.930 -8.272 -2.704 1.00 33.80 O
ATOM 2 P G B 5 16.330 -7.872 -1.258 1.00 37.23 P
ATOM 3 OP1 G B 5 17.127 -6.687 -0.794 1.00 35.74 O
ATOM 4 OP2 G B 5 16.260 -9.098 -0.406 1.00 34.25 O
ATOM 5 O5' G B 5 14.830 -7.329 -1.537 1.00 34.53 O
ATOM 6 C5' G B 5 14.651 -6.166 -2.339 1.00 32.49 C
ATOM 7 C4' G B 5 13.200 -6.066 -2.769 1.00 31.95 C
ATOM 8 O4' G B 5 12.770 -7.206 -3.536 1.00 28.81 O
ATOM 9 C3' G B 5 12.219 -6.071 -1.617 1.00 32.35 C
ATOM 10 O3' G B 5 12.148 -4.790 -1.008 1.00 34.88 O
ATOM 11 C2' G B 5 10.890 -6.348 -2.297 1.00 30.79 C
ATOM 12 O2' G B 5 10.230 -5.165 -2.762 1.00 28.70 O
ATOM 13 C1' G B 5 11.373 -7.284 -3.393 1.00 29.27 C
ATOM 14 N9 G B 5 11.108 -8.693 -3.189 1.00 28.50 N
ATOM 15 C8 G B 5 12.028 -9.667 -2.909 1.00 28.56 C
ATOM 16 N7 G B 5 11.509 -10.865 -2.843 1.00 28.21 N
ATOM 17 C5 G B 5 10.177 -10.674 -3.118 1.00 27.32 C
ATOM 18 C6 G B 5 9.146 -11.622 -3.194 1.00 27.92 C
ATOM 19 O6 G B 5 9.184 -12.845 -3.031 1.00 28.24 O
ATOM 20 N1 G B 5 7.935 -11.033 -3.515 1.00 28.42 N
ATOM 21 C2 G B 5 7.740 -9.694 -3.739 1.00 28.45 C
ATOM 22 N2 G B 5 6.470 -9.370 -4.020 1.00 28.09 N
ATOM 23 N3 G B 5 8.709 -8.773 -3.665 1.00 28.79 N
ATOM 24 C4 G B 5 9.904 -9.347 -3.347 1.00 28.21 C
ATOM 25 P U B 6 11.862 -4.671 0.572 1.00 38.32 P
ATOM 26 OP1 U B 6 12.073 -3.203 0.825 1.00 36.11 O
ATOM 27 OP2 U B 6 12.720 -5.719 1.247 1.00 35.50 O
ATOM 28 O5' U B 6 10.275 -5.059 0.732 1.00 35.70 O
TER
Atoms:
C4: (9.161,-10.329,-0.105)
N3: (7.791,-10.280,-0.216)
OP1: (12.073,-3.203,0.825)
OP2: (12.720,-5.719,1.247)
C2: (7.018,-9.162,-0.411)
C1': (6.940,-6.679,-0.708)
C3': (7.351,-5.360,1.100)
O5': (10.275,-5.059,0.732)
O4': (7.909,-5.722,-1.120)
C5': (9.324,-4.152,0.143)
P: (11.862,-4.671,0.572)
C4': (7.938,-4.695,-0.114)
C2': (6.182,-6.139,0.499)
O2': (5.018,-5.364,0.157)
N1: (7.686,-7.949,-0.468)
O4: (9.731,-11.426,0.047)
O2: (5.814,-9.271,-0.537)
C6: (9.049,-7.917,-0.356)
C5: (9.788,-9.023,-0.181)
O3': (6.993,-4.312,2.022)
N3: (7.791,-10.280,-0.216)
OP1: (12.073,-3.203,0.825)
OP2: (12.720,-5.719,1.247)
C2: (7.018,-9.162,-0.411)
C1': (6.940,-6.679,-0.708)
C3': (7.351,-5.360,1.100)
O5': (10.275,-5.059,0.732)
O4': (7.909,-5.722,-1.120)
C5': (9.324,-4.152,0.143)
P: (11.862,-4.671,0.572)
C4': (7.938,-4.695,-0.114)
C2': (6.182,-6.139,0.499)
O2': (5.018,-5.364,0.157)
N1: (7.686,-7.949,-0.468)
O4: (9.731,-11.426,0.047)
O2: (5.814,-9.271,-0.537)
C6: (9.049,-7.917,-0.356)
C5: (9.788,-9.023,-0.181)
O3': (6.993,-4.312,2.022)
OP1: (17.127,-6.687,-0.794)
OP2: (16.260,-9.098,-0.406)
C3': (12.219,-6.071,-1.617)
C1': (11.373,-7.284,-3.393)
C5': (14.651,-6.166,-2.339)
O6: (9.184,-12.845,-3.031)
O4': (12.770,-7.206,-3.536)
C8: (12.028,-9.667,-2.909)
C2: (7.740,-9.694,-3.739)
C6: (9.146,-11.622,-3.194)
C5: (10.177,-10.674,-3.118)
C4: (9.904,-9.347,-3.347)
P: (16.330,-7.872,-1.258)
C4': (13.200,-6.066,-2.769)
C2': (10.890,-6.348,-2.297)
O2': (10.230,-5.165,-2.762)
N1: (7.935,-11.033,-3.515)
N2: (6.470,-9.370,-4.020)
N3: (8.709,-8.773,-3.665)
N7: (11.509,-10.865,-2.843)
N9: (11.108,-8.693,-3.189)
O5': (14.830,-7.329,-1.537)
O3': (12.148,-4.790,-1.008)
OP2: (16.260,-9.098,-0.406)
C3': (12.219,-6.071,-1.617)
C1': (11.373,-7.284,-3.393)
C5': (14.651,-6.166,-2.339)
O6: (9.184,-12.845,-3.031)
O4': (12.770,-7.206,-3.536)
C8: (12.028,-9.667,-2.909)
C2: (7.740,-9.694,-3.739)
C6: (9.146,-11.622,-3.194)
C5: (10.177,-10.674,-3.118)
C4: (9.904,-9.347,-3.347)
P: (16.330,-7.872,-1.258)
C4': (13.200,-6.066,-2.769)
C2': (10.890,-6.348,-2.297)
O2': (10.230,-5.165,-2.762)
N1: (7.935,-11.033,-3.515)
N2: (6.470,-9.370,-4.020)
N3: (8.709,-8.773,-3.665)
N7: (11.509,-10.865,-2.843)
N9: (11.108,-8.693,-3.189)
O5': (14.830,-7.329,-1.537)
O3': (12.148,-4.790,-1.008)
Image (generated by PyMOL):