Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02378:02379
Extra
PDB:
ATOM 1 O3' C A2377 60.237 118.418 90.182 1.00 39.96 O
ATOM 2 P G A2378 59.476 118.551 88.781 1.00 40.19 P
ATOM 3 OP1 G A2378 58.471 117.467 88.705 1.00 41.55 O
ATOM 4 OP2 G A2378 60.482 118.695 87.708 1.00 38.86 O
ATOM 5 O5' G A2378 58.668 119.910 88.923 1.00 40.06 O
ATOM 6 C5' G A2378 59.182 121.145 88.421 1.00 40.40 C
ATOM 7 C4' G A2378 58.044 121.979 87.906 1.00 43.18 C
ATOM 8 O4' G A2378 57.463 121.312 86.768 1.00 42.62 O
ATOM 9 C3' G A2378 56.879 122.112 88.875 1.00 44.70 C
ATOM 10 O3' G A2378 57.151 123.196 89.766 1.00 48.89 O
ATOM 11 C2' G A2378 55.698 122.412 87.950 1.00 43.85 C
ATOM 12 O2' G A2378 55.584 123.787 87.643 1.00 44.20 O
ATOM 13 C1' G A2378 56.103 121.669 86.671 1.00 44.40 C
ATOM 14 N9 G A2378 55.346 120.494 86.254 1.00 45.62 N
ATOM 15 C8 G A2378 55.361 119.242 86.820 1.00 45.66 C
ATOM 16 N7 G A2378 54.642 118.373 86.160 1.00 45.85 N
ATOM 17 C5 G A2378 54.103 119.100 85.106 1.00 45.93 C
ATOM 18 C6 G A2378 53.256 118.691 84.046 1.00 45.09 C
ATOM 19 O6 G A2378 52.790 117.570 83.824 1.00 44.46 O
ATOM 20 N1 G A2378 52.959 119.748 83.191 1.00 45.12 N
ATOM 21 C2 G A2378 53.410 121.036 83.338 1.00 44.61 C
ATOM 22 N2 G A2378 53.007 121.916 82.415 1.00 43.82 N
ATOM 23 N3 G A2378 54.198 121.431 84.319 1.00 45.23 N
ATOM 24 C4 G A2378 54.508 120.416 85.161 1.00 46.07 C
ATOM 25 P A A2379 56.692 123.123 91.306 1.00 50.58 P
ATOM 26 OP1 A A2379 55.292 122.635 91.369 1.00 52.88 O
ATOM 27 OP2 A A2379 57.034 124.440 91.893 1.00 51.66 O
ATOM 28 O5' A A2379 57.609 122.000 91.964 1.00 49.49 O
TER
ATOM 1 O3' G B2378 57.151 123.196 89.766 1.00 48.89 O
ATOM 2 P A B2379 56.692 123.123 91.306 1.00 50.58 P
ATOM 3 OP1 A B2379 55.292 122.635 91.369 1.00 52.88 O
ATOM 4 OP2 A B2379 57.034 124.440 91.893 1.00 51.66 O
ATOM 5 O5' A B2379 57.609 122.000 91.964 1.00 49.49 O
ATOM 6 C5' A B2379 59.044 122.074 91.893 1.00 49.30 C
ATOM 7 C4' A B2379 59.649 121.872 93.265 1.00 48.49 C
ATOM 8 O4' A B2379 61.095 121.868 93.150 1.00 47.62 O
ATOM 9 C3' A B2379 59.325 122.956 94.286 1.00 46.87 C
ATOM 10 O3' A B2379 59.443 122.400 95.597 1.00 47.06 O
ATOM 11 C2' A B2379 60.475 123.936 94.073 1.00 47.10 C
ATOM 12 O2' A B2379 60.690 124.793 95.180 1.00 46.85 O
ATOM 13 C1' A B2379 61.636 122.962 93.864 1.00 47.16 C
ATOM 14 N9 A B2379 62.789 123.442 93.106 1.00 47.23 N
ATOM 15 C8 A B2379 64.105 123.407 93.495 1.00 47.65 C
ATOM 16 N7 A B2379 64.941 123.827 92.579 1.00 47.98 N
ATOM 17 C5 A B2379 64.120 124.176 91.518 1.00 48.33 C
ATOM 18 C6 A B2379 64.398 124.670 90.240 1.00 48.57 C
ATOM 19 N6 A B2379 65.635 124.892 89.793 1.00 48.10 N
ATOM 20 N1 A B2379 63.350 124.923 89.419 1.00 49.38 N
ATOM 21 C2 A B2379 62.110 124.680 89.869 1.00 48.84 C
ATOM 22 N3 A B2379 61.722 124.204 91.051 1.00 47.77 N
ATOM 23 C4 A B2379 62.788 123.967 91.837 1.00 48.25 C
ATOM 24 P U B2380 58.265 121.496 96.217 1.00 44.59 P
ATOM 25 OP1 U B2380 58.824 120.140 96.425 1.00 41.45 O
ATOM 26 OP2 U B2380 57.039 121.671 95.404 1.00 44.80 O
ATOM 27 O5' U B2380 58.003 122.159 97.642 1.00 45.34 O
TER
ATOM 2 P G A2378 59.476 118.551 88.781 1.00 40.19 P
ATOM 3 OP1 G A2378 58.471 117.467 88.705 1.00 41.55 O
ATOM 4 OP2 G A2378 60.482 118.695 87.708 1.00 38.86 O
ATOM 5 O5' G A2378 58.668 119.910 88.923 1.00 40.06 O
ATOM 6 C5' G A2378 59.182 121.145 88.421 1.00 40.40 C
ATOM 7 C4' G A2378 58.044 121.979 87.906 1.00 43.18 C
ATOM 8 O4' G A2378 57.463 121.312 86.768 1.00 42.62 O
ATOM 9 C3' G A2378 56.879 122.112 88.875 1.00 44.70 C
ATOM 10 O3' G A2378 57.151 123.196 89.766 1.00 48.89 O
ATOM 11 C2' G A2378 55.698 122.412 87.950 1.00 43.85 C
ATOM 12 O2' G A2378 55.584 123.787 87.643 1.00 44.20 O
ATOM 13 C1' G A2378 56.103 121.669 86.671 1.00 44.40 C
ATOM 14 N9 G A2378 55.346 120.494 86.254 1.00 45.62 N
ATOM 15 C8 G A2378 55.361 119.242 86.820 1.00 45.66 C
ATOM 16 N7 G A2378 54.642 118.373 86.160 1.00 45.85 N
ATOM 17 C5 G A2378 54.103 119.100 85.106 1.00 45.93 C
ATOM 18 C6 G A2378 53.256 118.691 84.046 1.00 45.09 C
ATOM 19 O6 G A2378 52.790 117.570 83.824 1.00 44.46 O
ATOM 20 N1 G A2378 52.959 119.748 83.191 1.00 45.12 N
ATOM 21 C2 G A2378 53.410 121.036 83.338 1.00 44.61 C
ATOM 22 N2 G A2378 53.007 121.916 82.415 1.00 43.82 N
ATOM 23 N3 G A2378 54.198 121.431 84.319 1.00 45.23 N
ATOM 24 C4 G A2378 54.508 120.416 85.161 1.00 46.07 C
ATOM 25 P A A2379 56.692 123.123 91.306 1.00 50.58 P
ATOM 26 OP1 A A2379 55.292 122.635 91.369 1.00 52.88 O
ATOM 27 OP2 A A2379 57.034 124.440 91.893 1.00 51.66 O
ATOM 28 O5' A A2379 57.609 122.000 91.964 1.00 49.49 O
TER
ATOM 1 O3' G B2378 57.151 123.196 89.766 1.00 48.89 O
ATOM 2 P A B2379 56.692 123.123 91.306 1.00 50.58 P
ATOM 3 OP1 A B2379 55.292 122.635 91.369 1.00 52.88 O
ATOM 4 OP2 A B2379 57.034 124.440 91.893 1.00 51.66 O
ATOM 5 O5' A B2379 57.609 122.000 91.964 1.00 49.49 O
ATOM 6 C5' A B2379 59.044 122.074 91.893 1.00 49.30 C
ATOM 7 C4' A B2379 59.649 121.872 93.265 1.00 48.49 C
ATOM 8 O4' A B2379 61.095 121.868 93.150 1.00 47.62 O
ATOM 9 C3' A B2379 59.325 122.956 94.286 1.00 46.87 C
ATOM 10 O3' A B2379 59.443 122.400 95.597 1.00 47.06 O
ATOM 11 C2' A B2379 60.475 123.936 94.073 1.00 47.10 C
ATOM 12 O2' A B2379 60.690 124.793 95.180 1.00 46.85 O
ATOM 13 C1' A B2379 61.636 122.962 93.864 1.00 47.16 C
ATOM 14 N9 A B2379 62.789 123.442 93.106 1.00 47.23 N
ATOM 15 C8 A B2379 64.105 123.407 93.495 1.00 47.65 C
ATOM 16 N7 A B2379 64.941 123.827 92.579 1.00 47.98 N
ATOM 17 C5 A B2379 64.120 124.176 91.518 1.00 48.33 C
ATOM 18 C6 A B2379 64.398 124.670 90.240 1.00 48.57 C
ATOM 19 N6 A B2379 65.635 124.892 89.793 1.00 48.10 N
ATOM 20 N1 A B2379 63.350 124.923 89.419 1.00 49.38 N
ATOM 21 C2 A B2379 62.110 124.680 89.869 1.00 48.84 C
ATOM 22 N3 A B2379 61.722 124.204 91.051 1.00 47.77 N
ATOM 23 C4 A B2379 62.788 123.967 91.837 1.00 48.25 C
ATOM 24 P U B2380 58.265 121.496 96.217 1.00 44.59 P
ATOM 25 OP1 U B2380 58.824 120.140 96.425 1.00 41.45 O
ATOM 26 OP2 U B2380 57.039 121.671 95.404 1.00 44.80 O
ATOM 27 O5' U B2380 58.003 122.159 97.642 1.00 45.34 O
TER
Atoms:
OP1: (58.471,117.467,88.705)
OP2: (60.482,118.695,87.708)
C3': (56.879,122.112,88.875)
C1': (56.103,121.669,86.671)
C5': (59.182,121.145,88.421)
O6: (52.790,117.570,83.824)
O4': (57.463,121.312,86.768)
C8: (55.361,119.242,86.820)
C2: (53.410,121.036,83.338)
C6: (53.256,118.691,84.046)
C5: (54.103,119.100,85.106)
C4: (54.508,120.416,85.161)
P: (59.476,118.551,88.781)
C4': (58.044,121.979,87.906)
C2': (55.698,122.412,87.950)
O2': (55.584,123.787,87.643)
N1: (52.959,119.748,83.191)
N2: (53.007,121.916,82.415)
N3: (54.198,121.431,84.319)
N7: (54.642,118.373,86.160)
N9: (55.346,120.494,86.254)
O5': (58.668,119.910,88.923)
O3': (57.151,123.196,89.766)
OP2: (60.482,118.695,87.708)
C3': (56.879,122.112,88.875)
C1': (56.103,121.669,86.671)
C5': (59.182,121.145,88.421)
O6: (52.790,117.570,83.824)
O4': (57.463,121.312,86.768)
C8: (55.361,119.242,86.820)
C2: (53.410,121.036,83.338)
C6: (53.256,118.691,84.046)
C5: (54.103,119.100,85.106)
C4: (54.508,120.416,85.161)
P: (59.476,118.551,88.781)
C4': (58.044,121.979,87.906)
C2': (55.698,122.412,87.950)
O2': (55.584,123.787,87.643)
N1: (52.959,119.748,83.191)
N2: (53.007,121.916,82.415)
N3: (54.198,121.431,84.319)
N7: (54.642,118.373,86.160)
N9: (55.346,120.494,86.254)
O5': (58.668,119.910,88.923)
O3': (57.151,123.196,89.766)
OP1: (55.292,122.635,91.369)
OP2: (57.034,124.440,91.893)
C3': (59.325,122.956,94.286)
C1': (61.636,122.962,93.864)
C5': (59.044,122.074,91.893)
O4': (61.095,121.868,93.150)
C8: (64.105,123.407,93.495)
O2': (60.690,124.793,95.180)
C6: (64.398,124.670,90.240)
C5: (64.120,124.176,91.518)
C4: (62.788,123.967,91.837)
P: (56.692,123.123,91.306)
C4': (59.649,121.872,93.265)
C2': (60.475,123.936,94.073)
C2: (62.110,124.680,89.869)
N1: (63.350,124.923,89.419)
N3: (61.722,124.204,91.051)
N6: (65.635,124.892,89.793)
N7: (64.941,123.827,92.579)
N9: (62.789,123.442,93.106)
O5': (57.609,122.000,91.964)
O3': (59.443,122.400,95.597)
OP2: (57.034,124.440,91.893)
C3': (59.325,122.956,94.286)
C1': (61.636,122.962,93.864)
C5': (59.044,122.074,91.893)
O4': (61.095,121.868,93.150)
C8: (64.105,123.407,93.495)
O2': (60.690,124.793,95.180)
C6: (64.398,124.670,90.240)
C5: (64.120,124.176,91.518)
C4: (62.788,123.967,91.837)
P: (56.692,123.123,91.306)
C4': (59.649,121.872,93.265)
C2': (60.475,123.936,94.073)
C2: (62.110,124.680,89.869)
N1: (63.350,124.923,89.419)
N3: (61.722,124.204,91.051)
N6: (65.635,124.892,89.793)
N7: (64.941,123.827,92.579)
N9: (62.789,123.442,93.106)
O5': (57.609,122.000,91.964)
O3': (59.443,122.400,95.597)
Image (generated by PyMOL):