ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YIJ:01084:01083

Extra

PDB:
ATOM 1 O3' A A1083 38.321 95.101 119.167 1.00 37.15 O
ATOM 2 P U A1084 39.714 95.854 118.975 1.00 36.10 P
ATOM 3 OP1 U A1084 40.707 95.194 119.861 1.00 36.24 O
ATOM 4 OP2 U A1084 39.457 97.300 119.111 1.00 35.58 O
ATOM 5 O5' U A1084 40.080 95.577 117.451 1.00 36.56 O
ATOM 6 C5' U A1084 40.199 94.232 116.953 1.00 37.93 C
ATOM 7 C4' U A1084 40.181 94.240 115.446 1.00 40.46 C
ATOM 8 O4' U A1084 38.924 94.784 114.986 1.00 41.68 O
ATOM 9 C3' U A1084 41.243 95.123 114.818 1.00 42.56 C
ATOM 10 O3' U A1084 42.435 94.353 114.677 1.00 44.40 O
ATOM 11 C2' U A1084 40.629 95.492 113.469 1.00 42.16 C
ATOM 12 O2' U A1084 40.832 94.503 112.480 1.00 43.38 O
ATOM 13 C1' U A1084 39.135 95.537 113.806 1.00 41.67 C
ATOM 14 N1 U A1084 38.538 96.867 113.990 1.00 40.97 N
ATOM 15 C2 U A1084 38.048 97.519 112.869 1.00 40.99 C
ATOM 16 O2 U A1084 38.131 97.055 111.746 1.00 43.55 O
ATOM 17 N3 U A1084 37.458 98.734 113.114 1.00 38.68 N
ATOM 18 C4 U A1084 37.311 99.349 114.339 1.00 41.18 C
ATOM 19 O4 U A1084 36.658 100.390 114.422 1.00 44.26 O
ATOM 20 C5 U A1084 37.868 98.625 115.439 1.00 41.93 C
ATOM 21 C6 U A1084 38.449 97.441 115.233 1.00 41.57 C
ATOM 22 P C A1085 43.831 94.908 115.244 1.00 46.61 P
ATOM 23 OP1 C A1085 44.840 93.892 114.837 1.00 45.80 O
ATOM 24 OP2 C A1085 43.696 95.272 116.677 1.00 47.18 O
ATOM 25 O5' C A1085 44.074 96.251 114.424 1.00 46.41 O
TER

ATOM 1 O3' A B1082 36.221 100.478 120.687 1.00 47.70 O
ATOM 2 P A B1083 35.126 99.742 119.772 1.00 49.46 P
ATOM 3 OP1 A B1083 35.576 99.941 118.372 1.00 48.50 O
ATOM 4 OP2 A B1083 33.756 100.165 120.173 1.00 51.29 O
ATOM 5 O5' A B1083 35.264 98.209 120.170 1.00 47.10 O
ATOM 6 C5' A B1083 36.472 97.503 119.908 1.00 42.01 C
ATOM 7 C4' A B1083 36.169 96.091 119.495 1.00 39.24 C
ATOM 8 O4' A B1083 34.899 96.019 118.801 1.00 39.67 O
ATOM 9 C3' A B1083 37.183 95.585 118.499 1.00 39.55 C
ATOM 10 O3' A B1083 38.321 95.101 119.167 1.00 37.15 O
ATOM 11 C2' A B1083 36.402 94.544 117.721 1.00 39.55 C
ATOM 12 O2' A B1083 36.293 93.338 118.436 1.00 41.97 O
ATOM 13 C1' A B1083 35.032 95.217 117.639 1.00 38.56 C
ATOM 14 N9 A B1083 34.865 96.097 116.479 1.00 37.31 N
ATOM 15 C8 A B1083 34.493 97.422 116.501 1.00 34.70 C
ATOM 16 N7 A B1083 34.369 97.956 115.313 1.00 34.69 N
ATOM 17 C5 A B1083 34.688 96.922 114.447 1.00 32.65 C
ATOM 18 C6 A B1083 34.726 96.845 113.051 1.00 31.41 C
ATOM 19 N6 A B1083 34.419 97.865 112.246 1.00 29.97 N
ATOM 20 N1 A B1083 35.089 95.670 112.499 1.00 32.21 N
ATOM 21 C2 A B1083 35.389 94.647 113.305 1.00 32.05 C
ATOM 22 N3 A B1083 35.382 94.592 114.631 1.00 34.46 N
ATOM 23 C4 A B1083 35.015 95.776 115.150 1.00 34.81 C
ATOM 24 P U B1084 39.714 95.854 118.975 1.00 36.10 P
ATOM 25 OP1 U B1084 40.707 95.194 119.861 1.00 36.24 O
ATOM 26 OP2 U B1084 39.457 97.300 119.111 1.00 35.58 O
ATOM 27 O5' U B1084 40.080 95.577 117.451 1.00 36.56 O
TER

Atoms:
C4: (37.311,99.349,114.339)
N3: (37.458,98.734,113.114)
OP1: (40.707,95.194,119.861)
OP2: (39.457,97.300,119.111)
C2: (38.048,97.519,112.869)
C1': (39.135,95.537,113.806)
C3': (41.243,95.123,114.818)
O5': (40.080,95.577,117.451)
O4': (38.924,94.784,114.986)
C5': (40.199,94.232,116.953)
P: (39.714,95.854,118.975)
C4': (40.181,94.240,115.446)
C2': (40.629,95.492,113.469)
O2': (40.832,94.503,112.480)
N1: (38.538,96.867,113.990)
O4: (36.658,100.390,114.422)
O2: (38.131,97.055,111.746)
C6: (38.449,97.441,115.233)
C5: (37.868,98.625,115.439)
O3': (42.435,94.353,114.677)
OP1: (35.576,99.941,118.372)
OP2: (33.756,100.165,120.173)
C3': (37.183,95.585,118.499)
C1': (35.032,95.217,117.639)
C5': (36.472,97.503,119.908)
O4': (34.899,96.019,118.801)
C8: (34.493,97.422,116.501)
O2': (36.293,93.338,118.436)
C6: (34.726,96.845,113.051)
C5: (34.688,96.922,114.447)
C4: (35.015,95.776,115.150)
P: (35.126,99.742,119.772)
C4': (36.169,96.091,119.495)
C2': (36.402,94.544,117.721)
C2: (35.389,94.647,113.305)
N1: (35.089,95.670,112.499)
N3: (35.382,94.592,114.631)
N6: (34.419,97.865,112.246)
N7: (34.369,97.956,115.313)
N9: (34.865,96.097,116.479)
O5': (35.264,98.209,120.170)
O3': (38.321,95.101,119.167)
Image (generated by PyMOL):
PyMOL image
show in jmol