Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0302:0305
Extra
PDB:
ATOM 1 O3' U A 301 1.030 145.121 52.827 1.00 57.55 O
ATOM 2 P G A 302 1.488 146.652 52.974 1.00 57.35 P
ATOM 3 OP1 G A 302 1.469 146.998 54.410 1.00 57.05 O
ATOM 4 OP2 G A 302 0.714 147.475 52.013 1.00 58.24 O
ATOM 5 O5' G A 302 3.002 146.642 52.487 1.00 57.71 O
ATOM 6 C5' G A 302 4.013 145.967 53.251 1.00 54.63 C
ATOM 7 C4' G A 302 5.337 145.999 52.525 1.00 52.49 C
ATOM 8 O4' G A 302 5.245 145.251 51.283 1.00 51.65 O
ATOM 9 C3' G A 302 5.829 147.363 52.076 1.00 51.08 C
ATOM 10 O3' G A 302 6.413 148.103 53.134 1.00 50.27 O
ATOM 11 C2' G A 302 6.843 146.983 51.009 1.00 51.48 C
ATOM 12 O2' G A 302 8.066 146.528 51.542 1.00 52.65 O
ATOM 13 C1' G A 302 6.128 145.817 50.326 1.00 52.04 C
ATOM 14 N9 G A 302 5.350 146.302 49.190 1.00 53.01 N
ATOM 15 C8 G A 302 4.096 146.860 49.215 1.00 52.91 C
ATOM 16 N7 G A 302 3.697 147.273 48.045 1.00 54.13 N
ATOM 17 C5 G A 302 4.742 146.951 47.192 1.00 54.55 C
ATOM 18 C6 G A 302 4.888 147.164 45.800 1.00 55.41 C
ATOM 19 O6 G A 302 4.103 147.709 45.016 1.00 58.13 O
ATOM 20 N1 G A 302 6.103 146.674 45.334 1.00 55.35 N
ATOM 21 C2 G A 302 7.059 146.066 46.106 1.00 53.90 C
ATOM 22 N2 G A 302 8.165 145.659 45.468 1.00 52.22 N
ATOM 23 N3 G A 302 6.939 145.870 47.405 1.00 53.91 N
ATOM 24 C4 G A 302 5.762 146.334 47.879 1.00 53.62 C
ATOM 25 P G A 303 6.230 149.697 53.183 1.00 51.08 P
ATOM 26 OP1 G A 303 7.039 150.228 54.306 1.00 50.94 O
ATOM 27 OP2 G A 303 4.776 149.983 53.133 1.00 51.54 O
ATOM 28 O5' G A 303 6.885 150.198 51.822 1.00 49.77 O
TER
ATOM 1 O3' A B 304 9.607 148.501 43.327 1.00 49.11 O
ATOM 2 P A B 305 8.282 147.946 42.598 1.00 48.62 P
ATOM 3 OP1 A B 305 8.372 148.385 41.183 1.00 48.09 O
ATOM 4 OP2 A B 305 7.094 148.327 43.411 1.00 48.48 O
ATOM 5 O5' A B 305 8.443 146.359 42.592 1.00 47.65 O
ATOM 6 C5' A B 305 9.429 145.738 41.749 1.00 48.32 C
ATOM 7 C4' A B 305 9.396 144.230 41.881 1.00 48.87 C
ATOM 8 O4' A B 305 9.022 143.876 43.244 1.00 49.76 O
ATOM 9 C3' A B 305 8.438 143.435 40.984 1.00 48.51 C
ATOM 10 O3' A B 305 9.120 142.248 40.582 1.00 51.33 O
ATOM 11 C2' A B 305 7.361 142.978 41.969 1.00 49.08 C
ATOM 12 O2' A B 305 6.725 141.770 41.598 1.00 49.80 O
ATOM 13 C1' A B 305 8.225 142.722 43.192 1.00 48.53 C
ATOM 14 N9 A B 305 7.552 142.526 44.472 1.00 47.05 N
ATOM 15 C8 A B 305 6.461 143.171 44.987 1.00 47.18 C
ATOM 16 N7 A B 305 6.108 142.745 46.175 1.00 47.52 N
ATOM 17 C5 A B 305 7.031 141.750 46.461 1.00 46.74 C
ATOM 18 C6 A B 305 7.199 140.905 47.570 1.00 45.76 C
ATOM 19 N6 A B 305 6.411 140.934 48.646 1.00 46.22 N
ATOM 20 N1 A B 305 8.213 140.018 47.535 1.00 43.33 N
ATOM 21 C2 A B 305 9.001 139.989 46.457 1.00 44.58 C
ATOM 22 N3 A B 305 8.946 140.729 45.356 1.00 46.37 N
ATOM 23 C4 A B 305 7.925 141.603 45.421 1.00 47.25 C
ATOM 24 P U B 306 9.650 142.093 39.077 1.00 53.48 P
ATOM 25 OP1 U B 306 10.459 143.290 38.745 1.00 53.22 O
ATOM 26 OP2 U B 306 8.494 141.725 38.221 1.00 55.62 O
ATOM 27 O5' U B 306 10.633 140.842 39.156 1.00 55.92 O
TER
ATOM 2 P G A 302 1.488 146.652 52.974 1.00 57.35 P
ATOM 3 OP1 G A 302 1.469 146.998 54.410 1.00 57.05 O
ATOM 4 OP2 G A 302 0.714 147.475 52.013 1.00 58.24 O
ATOM 5 O5' G A 302 3.002 146.642 52.487 1.00 57.71 O
ATOM 6 C5' G A 302 4.013 145.967 53.251 1.00 54.63 C
ATOM 7 C4' G A 302 5.337 145.999 52.525 1.00 52.49 C
ATOM 8 O4' G A 302 5.245 145.251 51.283 1.00 51.65 O
ATOM 9 C3' G A 302 5.829 147.363 52.076 1.00 51.08 C
ATOM 10 O3' G A 302 6.413 148.103 53.134 1.00 50.27 O
ATOM 11 C2' G A 302 6.843 146.983 51.009 1.00 51.48 C
ATOM 12 O2' G A 302 8.066 146.528 51.542 1.00 52.65 O
ATOM 13 C1' G A 302 6.128 145.817 50.326 1.00 52.04 C
ATOM 14 N9 G A 302 5.350 146.302 49.190 1.00 53.01 N
ATOM 15 C8 G A 302 4.096 146.860 49.215 1.00 52.91 C
ATOM 16 N7 G A 302 3.697 147.273 48.045 1.00 54.13 N
ATOM 17 C5 G A 302 4.742 146.951 47.192 1.00 54.55 C
ATOM 18 C6 G A 302 4.888 147.164 45.800 1.00 55.41 C
ATOM 19 O6 G A 302 4.103 147.709 45.016 1.00 58.13 O
ATOM 20 N1 G A 302 6.103 146.674 45.334 1.00 55.35 N
ATOM 21 C2 G A 302 7.059 146.066 46.106 1.00 53.90 C
ATOM 22 N2 G A 302 8.165 145.659 45.468 1.00 52.22 N
ATOM 23 N3 G A 302 6.939 145.870 47.405 1.00 53.91 N
ATOM 24 C4 G A 302 5.762 146.334 47.879 1.00 53.62 C
ATOM 25 P G A 303 6.230 149.697 53.183 1.00 51.08 P
ATOM 26 OP1 G A 303 7.039 150.228 54.306 1.00 50.94 O
ATOM 27 OP2 G A 303 4.776 149.983 53.133 1.00 51.54 O
ATOM 28 O5' G A 303 6.885 150.198 51.822 1.00 49.77 O
TER
ATOM 1 O3' A B 304 9.607 148.501 43.327 1.00 49.11 O
ATOM 2 P A B 305 8.282 147.946 42.598 1.00 48.62 P
ATOM 3 OP1 A B 305 8.372 148.385 41.183 1.00 48.09 O
ATOM 4 OP2 A B 305 7.094 148.327 43.411 1.00 48.48 O
ATOM 5 O5' A B 305 8.443 146.359 42.592 1.00 47.65 O
ATOM 6 C5' A B 305 9.429 145.738 41.749 1.00 48.32 C
ATOM 7 C4' A B 305 9.396 144.230 41.881 1.00 48.87 C
ATOM 8 O4' A B 305 9.022 143.876 43.244 1.00 49.76 O
ATOM 9 C3' A B 305 8.438 143.435 40.984 1.00 48.51 C
ATOM 10 O3' A B 305 9.120 142.248 40.582 1.00 51.33 O
ATOM 11 C2' A B 305 7.361 142.978 41.969 1.00 49.08 C
ATOM 12 O2' A B 305 6.725 141.770 41.598 1.00 49.80 O
ATOM 13 C1' A B 305 8.225 142.722 43.192 1.00 48.53 C
ATOM 14 N9 A B 305 7.552 142.526 44.472 1.00 47.05 N
ATOM 15 C8 A B 305 6.461 143.171 44.987 1.00 47.18 C
ATOM 16 N7 A B 305 6.108 142.745 46.175 1.00 47.52 N
ATOM 17 C5 A B 305 7.031 141.750 46.461 1.00 46.74 C
ATOM 18 C6 A B 305 7.199 140.905 47.570 1.00 45.76 C
ATOM 19 N6 A B 305 6.411 140.934 48.646 1.00 46.22 N
ATOM 20 N1 A B 305 8.213 140.018 47.535 1.00 43.33 N
ATOM 21 C2 A B 305 9.001 139.989 46.457 1.00 44.58 C
ATOM 22 N3 A B 305 8.946 140.729 45.356 1.00 46.37 N
ATOM 23 C4 A B 305 7.925 141.603 45.421 1.00 47.25 C
ATOM 24 P U B 306 9.650 142.093 39.077 1.00 53.48 P
ATOM 25 OP1 U B 306 10.459 143.290 38.745 1.00 53.22 O
ATOM 26 OP2 U B 306 8.494 141.725 38.221 1.00 55.62 O
ATOM 27 O5' U B 306 10.633 140.842 39.156 1.00 55.92 O
TER
Atoms:
OP1: (1.469,146.998,54.410)
OP2: (0.714,147.475,52.013)
C3': (5.829,147.363,52.076)
C1': (6.128,145.817,50.326)
C5': (4.013,145.967,53.251)
O6: (4.103,147.709,45.016)
O4': (5.245,145.251,51.283)
C8: (4.096,146.860,49.215)
C2: (7.059,146.066,46.106)
C6: (4.888,147.164,45.800)
C5: (4.742,146.951,47.192)
C4: (5.762,146.334,47.879)
P: (1.488,146.652,52.974)
C4': (5.337,145.999,52.525)
C2': (6.843,146.983,51.009)
O2': (8.066,146.528,51.542)
N1: (6.103,146.674,45.334)
N2: (8.165,145.659,45.468)
N3: (6.939,145.870,47.405)
N7: (3.697,147.273,48.045)
N9: (5.350,146.302,49.190)
O5': (3.002,146.642,52.487)
O3': (6.413,148.103,53.134)
OP2: (0.714,147.475,52.013)
C3': (5.829,147.363,52.076)
C1': (6.128,145.817,50.326)
C5': (4.013,145.967,53.251)
O6: (4.103,147.709,45.016)
O4': (5.245,145.251,51.283)
C8: (4.096,146.860,49.215)
C2: (7.059,146.066,46.106)
C6: (4.888,147.164,45.800)
C5: (4.742,146.951,47.192)
C4: (5.762,146.334,47.879)
P: (1.488,146.652,52.974)
C4': (5.337,145.999,52.525)
C2': (6.843,146.983,51.009)
O2': (8.066,146.528,51.542)
N1: (6.103,146.674,45.334)
N2: (8.165,145.659,45.468)
N3: (6.939,145.870,47.405)
N7: (3.697,147.273,48.045)
N9: (5.350,146.302,49.190)
O5': (3.002,146.642,52.487)
O3': (6.413,148.103,53.134)
OP1: (8.372,148.385,41.183)
OP2: (7.094,148.327,43.411)
C3': (8.438,143.435,40.984)
C1': (8.225,142.722,43.192)
C5': (9.429,145.738,41.749)
O4': (9.022,143.876,43.244)
C8: (6.461,143.171,44.987)
O2': (6.725,141.770,41.598)
C6: (7.199,140.905,47.570)
C5: (7.031,141.750,46.461)
C4: (7.925,141.603,45.421)
P: (8.282,147.946,42.598)
C4': (9.396,144.230,41.881)
C2': (7.361,142.978,41.969)
C2: (9.001,139.989,46.457)
N1: (8.213,140.018,47.535)
N3: (8.946,140.729,45.356)
N6: (6.411,140.934,48.646)
N7: (6.108,142.745,46.175)
N9: (7.552,142.526,44.472)
O5': (8.443,146.359,42.592)
O3': (9.120,142.248,40.582)
OP2: (7.094,148.327,43.411)
C3': (8.438,143.435,40.984)
C1': (8.225,142.722,43.192)
C5': (9.429,145.738,41.749)
O4': (9.022,143.876,43.244)
C8: (6.461,143.171,44.987)
O2': (6.725,141.770,41.598)
C6: (7.199,140.905,47.570)
C5: (7.031,141.750,46.461)
C4: (7.925,141.603,45.421)
P: (8.282,147.946,42.598)
C4': (9.396,144.230,41.881)
C2': (7.361,142.978,41.969)
C2: (9.001,139.989,46.457)
N1: (8.213,140.018,47.535)
N3: (8.946,140.729,45.356)
N6: (6.411,140.934,48.646)
N7: (6.108,142.745,46.175)
N9: (7.552,142.526,44.472)
O5': (8.443,146.359,42.592)
O3': (9.120,142.248,40.582)
Image (generated by PyMOL):