Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0576:0557
Extra
PDB:
ATOM 1 O3' A A 575 -8.943 87.285 110.318 1.00 67.10 O
ATOM 2 P G A 576 -9.249 85.850 109.676 1.00 69.56 P
ATOM 3 OP1 G A 576 -10.719 85.663 109.737 1.00 71.65 O
ATOM 4 OP2 G A 576 -8.353 84.856 110.327 1.00 68.96 O
ATOM 5 O5' G A 576 -8.850 86.014 108.137 1.00 69.21 O
ATOM 6 C5' G A 576 -7.510 86.381 107.750 1.00 66.28 C
ATOM 7 C4' G A 576 -7.380 87.889 107.662 1.00 64.87 C
ATOM 8 O4' G A 576 -6.120 88.302 108.237 1.00 63.89 O
ATOM 9 C3' G A 576 -7.429 88.551 106.291 1.00 63.77 C
ATOM 10 O3' G A 576 -7.887 89.886 106.540 1.00 65.25 O
ATOM 11 C2' G A 576 -5.953 88.523 105.896 1.00 62.07 C
ATOM 12 O2' G A 576 -5.593 89.466 104.909 1.00 61.76 O
ATOM 13 C1' G A 576 -5.296 88.862 107.235 1.00 60.53 C
ATOM 14 N9 G A 576 -3.949 88.360 107.473 1.00 56.19 N
ATOM 15 C8 G A 576 -3.382 87.202 107.000 1.00 54.35 C
ATOM 16 N7 G A 576 -2.182 86.997 107.462 1.00 53.20 N
ATOM 17 C5 G A 576 -1.938 88.096 108.276 1.00 53.27 C
ATOM 18 C6 G A 576 -0.809 88.423 109.055 1.00 53.40 C
ATOM 19 O6 G A 576 0.238 87.781 109.194 1.00 54.04 O
ATOM 20 N1 G A 576 -0.981 89.631 109.724 1.00 52.58 N
ATOM 21 C2 G A 576 -2.099 90.419 109.654 1.00 51.95 C
ATOM 22 N2 G A 576 -2.075 91.555 110.371 1.00 51.78 N
ATOM 23 N3 G A 576 -3.161 90.119 108.936 1.00 51.51 N
ATOM 24 C4 G A 576 -3.012 88.952 108.277 1.00 53.16 C
ATOM 25 P U A 577 -8.279 90.867 105.325 1.00 66.41 P
ATOM 26 OP1 U A 577 -8.921 90.066 104.243 1.00 64.37 O
ATOM 27 OP2 U A 577 -7.103 91.719 105.009 1.00 65.42 O
ATOM 28 O5' U A 577 -9.359 91.834 105.986 1.00 65.61 O
TER
ATOM 1 O3' G B 556 0.383 94.420 112.320 1.00 49.34 O
ATOM 2 P A B 557 -0.098 93.198 113.249 1.00 50.64 P
ATOM 3 OP1 A B 557 0.600 93.362 114.543 1.00 51.18 O
ATOM 4 OP2 A B 557 0.008 91.908 112.514 1.00 50.30 O
ATOM 5 O5' A B 557 -1.647 93.493 113.455 1.00 53.32 O
ATOM 6 C5' A B 557 -2.161 93.878 114.738 1.00 53.47 C
ATOM 7 C4' A B 557 -2.078 95.369 114.898 1.00 53.18 C
ATOM 8 O4' A B 557 -2.595 96.012 113.704 1.00 53.14 O
ATOM 9 C3' A B 557 -2.924 95.921 116.025 1.00 54.26 C
ATOM 10 O3' A B 557 -2.288 95.797 117.285 1.00 57.23 O
ATOM 11 C2' A B 557 -3.158 97.352 115.571 1.00 54.06 C
ATOM 12 O2' A B 557 -2.043 98.194 115.780 1.00 51.56 O
ATOM 13 C1' A B 557 -3.378 97.136 114.071 1.00 54.26 C
ATOM 14 N9 A B 557 -4.777 96.819 113.770 1.00 54.97 N
ATOM 15 C8 A B 557 -5.281 95.673 113.195 1.00 55.23 C
ATOM 16 N7 A B 557 -6.587 95.670 113.080 1.00 55.30 N
ATOM 17 C5 A B 557 -6.971 96.897 113.606 1.00 55.22 C
ATOM 18 C6 A B 557 -8.228 97.504 113.768 1.00 55.21 C
ATOM 19 N6 A B 557 -9.377 96.935 113.396 1.00 54.80 N
ATOM 20 N1 A B 557 -8.265 98.735 114.328 1.00 54.94 N
ATOM 21 C2 A B 557 -7.109 99.310 114.690 1.00 54.56 C
ATOM 22 N3 A B 557 -5.867 98.844 114.584 1.00 54.32 N
ATOM 23 C4 A B 557 -5.867 97.617 114.030 1.00 54.96 C
ATOM 24 P C B 558 -3.175 95.526 118.596 1.00 57.98 P
ATOM 25 OP1 C B 558 -2.241 95.227 119.711 1.00 58.37 O
ATOM 26 OP2 C B 558 -4.237 94.542 118.246 1.00 57.36 O
ATOM 27 O5' C B 558 -3.827 96.945 118.893 1.00 56.81 O
TER
ATOM 2 P G A 576 -9.249 85.850 109.676 1.00 69.56 P
ATOM 3 OP1 G A 576 -10.719 85.663 109.737 1.00 71.65 O
ATOM 4 OP2 G A 576 -8.353 84.856 110.327 1.00 68.96 O
ATOM 5 O5' G A 576 -8.850 86.014 108.137 1.00 69.21 O
ATOM 6 C5' G A 576 -7.510 86.381 107.750 1.00 66.28 C
ATOM 7 C4' G A 576 -7.380 87.889 107.662 1.00 64.87 C
ATOM 8 O4' G A 576 -6.120 88.302 108.237 1.00 63.89 O
ATOM 9 C3' G A 576 -7.429 88.551 106.291 1.00 63.77 C
ATOM 10 O3' G A 576 -7.887 89.886 106.540 1.00 65.25 O
ATOM 11 C2' G A 576 -5.953 88.523 105.896 1.00 62.07 C
ATOM 12 O2' G A 576 -5.593 89.466 104.909 1.00 61.76 O
ATOM 13 C1' G A 576 -5.296 88.862 107.235 1.00 60.53 C
ATOM 14 N9 G A 576 -3.949 88.360 107.473 1.00 56.19 N
ATOM 15 C8 G A 576 -3.382 87.202 107.000 1.00 54.35 C
ATOM 16 N7 G A 576 -2.182 86.997 107.462 1.00 53.20 N
ATOM 17 C5 G A 576 -1.938 88.096 108.276 1.00 53.27 C
ATOM 18 C6 G A 576 -0.809 88.423 109.055 1.00 53.40 C
ATOM 19 O6 G A 576 0.238 87.781 109.194 1.00 54.04 O
ATOM 20 N1 G A 576 -0.981 89.631 109.724 1.00 52.58 N
ATOM 21 C2 G A 576 -2.099 90.419 109.654 1.00 51.95 C
ATOM 22 N2 G A 576 -2.075 91.555 110.371 1.00 51.78 N
ATOM 23 N3 G A 576 -3.161 90.119 108.936 1.00 51.51 N
ATOM 24 C4 G A 576 -3.012 88.952 108.277 1.00 53.16 C
ATOM 25 P U A 577 -8.279 90.867 105.325 1.00 66.41 P
ATOM 26 OP1 U A 577 -8.921 90.066 104.243 1.00 64.37 O
ATOM 27 OP2 U A 577 -7.103 91.719 105.009 1.00 65.42 O
ATOM 28 O5' U A 577 -9.359 91.834 105.986 1.00 65.61 O
TER
ATOM 1 O3' G B 556 0.383 94.420 112.320 1.00 49.34 O
ATOM 2 P A B 557 -0.098 93.198 113.249 1.00 50.64 P
ATOM 3 OP1 A B 557 0.600 93.362 114.543 1.00 51.18 O
ATOM 4 OP2 A B 557 0.008 91.908 112.514 1.00 50.30 O
ATOM 5 O5' A B 557 -1.647 93.493 113.455 1.00 53.32 O
ATOM 6 C5' A B 557 -2.161 93.878 114.738 1.00 53.47 C
ATOM 7 C4' A B 557 -2.078 95.369 114.898 1.00 53.18 C
ATOM 8 O4' A B 557 -2.595 96.012 113.704 1.00 53.14 O
ATOM 9 C3' A B 557 -2.924 95.921 116.025 1.00 54.26 C
ATOM 10 O3' A B 557 -2.288 95.797 117.285 1.00 57.23 O
ATOM 11 C2' A B 557 -3.158 97.352 115.571 1.00 54.06 C
ATOM 12 O2' A B 557 -2.043 98.194 115.780 1.00 51.56 O
ATOM 13 C1' A B 557 -3.378 97.136 114.071 1.00 54.26 C
ATOM 14 N9 A B 557 -4.777 96.819 113.770 1.00 54.97 N
ATOM 15 C8 A B 557 -5.281 95.673 113.195 1.00 55.23 C
ATOM 16 N7 A B 557 -6.587 95.670 113.080 1.00 55.30 N
ATOM 17 C5 A B 557 -6.971 96.897 113.606 1.00 55.22 C
ATOM 18 C6 A B 557 -8.228 97.504 113.768 1.00 55.21 C
ATOM 19 N6 A B 557 -9.377 96.935 113.396 1.00 54.80 N
ATOM 20 N1 A B 557 -8.265 98.735 114.328 1.00 54.94 N
ATOM 21 C2 A B 557 -7.109 99.310 114.690 1.00 54.56 C
ATOM 22 N3 A B 557 -5.867 98.844 114.584 1.00 54.32 N
ATOM 23 C4 A B 557 -5.867 97.617 114.030 1.00 54.96 C
ATOM 24 P C B 558 -3.175 95.526 118.596 1.00 57.98 P
ATOM 25 OP1 C B 558 -2.241 95.227 119.711 1.00 58.37 O
ATOM 26 OP2 C B 558 -4.237 94.542 118.246 1.00 57.36 O
ATOM 27 O5' C B 558 -3.827 96.945 118.893 1.00 56.81 O
TER
Atoms:
OP1: (-10.719,85.663,109.737)
OP2: (-8.353,84.856,110.327)
C3': (-7.429,88.551,106.291)
C1': (-5.296,88.862,107.235)
C5': (-7.510,86.381,107.750)
O6: (0.238,87.781,109.194)
O4': (-6.120,88.302,108.237)
C8: (-3.382,87.202,107.000)
C2: (-2.099,90.419,109.654)
C6: (-0.809,88.423,109.055)
C5: (-1.938,88.096,108.276)
C4: (-3.012,88.952,108.277)
P: (-9.249,85.850,109.676)
C4': (-7.380,87.889,107.662)
C2': (-5.953,88.523,105.896)
O2': (-5.593,89.466,104.909)
N1: (-0.981,89.631,109.724)
N2: (-2.075,91.555,110.371)
N3: (-3.161,90.119,108.936)
N7: (-2.182,86.997,107.462)
N9: (-3.949,88.360,107.473)
O5': (-8.850,86.014,108.137)
O3': (-7.887,89.886,106.540)
OP2: (-8.353,84.856,110.327)
C3': (-7.429,88.551,106.291)
C1': (-5.296,88.862,107.235)
C5': (-7.510,86.381,107.750)
O6: (0.238,87.781,109.194)
O4': (-6.120,88.302,108.237)
C8: (-3.382,87.202,107.000)
C2: (-2.099,90.419,109.654)
C6: (-0.809,88.423,109.055)
C5: (-1.938,88.096,108.276)
C4: (-3.012,88.952,108.277)
P: (-9.249,85.850,109.676)
C4': (-7.380,87.889,107.662)
C2': (-5.953,88.523,105.896)
O2': (-5.593,89.466,104.909)
N1: (-0.981,89.631,109.724)
N2: (-2.075,91.555,110.371)
N3: (-3.161,90.119,108.936)
N7: (-2.182,86.997,107.462)
N9: (-3.949,88.360,107.473)
O5': (-8.850,86.014,108.137)
O3': (-7.887,89.886,106.540)
OP1: (0.600,93.362,114.543)
OP2: (0.008,91.908,112.514)
C3': (-2.924,95.921,116.025)
C1': (-3.378,97.136,114.071)
C5': (-2.161,93.878,114.738)
O4': (-2.595,96.012,113.704)
C8: (-5.281,95.673,113.195)
O2': (-2.043,98.194,115.780)
C6: (-8.228,97.504,113.768)
C5: (-6.971,96.897,113.606)
C4: (-5.867,97.617,114.030)
P: (-0.098,93.198,113.249)
C4': (-2.078,95.369,114.898)
C2': (-3.158,97.352,115.571)
C2: (-7.109,99.310,114.690)
N1: (-8.265,98.735,114.328)
N3: (-5.867,98.844,114.584)
N6: (-9.377,96.935,113.396)
N7: (-6.587,95.670,113.080)
N9: (-4.777,96.819,113.770)
O5': (-1.647,93.493,113.455)
O3': (-2.288,95.797,117.285)
OP2: (0.008,91.908,112.514)
C3': (-2.924,95.921,116.025)
C1': (-3.378,97.136,114.071)
C5': (-2.161,93.878,114.738)
O4': (-2.595,96.012,113.704)
C8: (-5.281,95.673,113.195)
O2': (-2.043,98.194,115.780)
C6: (-8.228,97.504,113.768)
C5: (-6.971,96.897,113.606)
C4: (-5.867,97.617,114.030)
P: (-0.098,93.198,113.249)
C4': (-2.078,95.369,114.898)
C2': (-3.158,97.352,115.571)
C2: (-7.109,99.310,114.690)
N1: (-8.265,98.735,114.328)
N3: (-5.867,98.844,114.584)
N6: (-9.377,96.935,113.396)
N7: (-6.587,95.670,113.080)
N9: (-4.777,96.819,113.770)
O5': (-1.647,93.493,113.455)
O3': (-2.288,95.797,117.285)
Image (generated by PyMOL):