Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A73:A76
Extra
PDB:
ATOM 1 O3' G A 72 22.492 -42.467 20.164 1.00 98.96 O
ATOM 2 P G A 73 21.717 -43.682 20.883 1.00101.70 P
ATOM 3 OP1 G A 73 22.799 -44.607 21.294 1.00100.33 O
ATOM 4 OP2 G A 73 20.591 -44.172 20.055 1.00101.13 O
ATOM 5 O5' G A 73 21.013 -42.978 22.154 1.00 99.90 O
ATOM 6 C5' G A 73 21.846 -42.481 23.224 1.00 98.73 C
ATOM 7 C4' G A 73 21.062 -41.942 24.411 1.00 96.83 C
ATOM 8 O4' G A 73 20.348 -40.740 24.032 1.00 95.84 O
ATOM 9 C3' G A 73 19.957 -42.845 24.941 1.00 95.07 C
ATOM 10 O3' G A 73 20.482 -43.923 25.743 1.00 94.72 O
ATOM 11 C2' G A 73 19.092 -41.855 25.716 1.00 93.36 C
ATOM 12 O2' G A 73 19.571 -41.576 27.009 1.00 91.74 O
ATOM 13 C1' G A 73 19.156 -40.627 24.804 1.00 92.86 C
ATOM 14 N9 G A 73 17.996 -40.572 23.921 1.00 90.89 N
ATOM 15 C8 G A 73 17.910 -41.108 22.666 1.00 90.32 C
ATOM 16 N7 G A 73 16.741 -40.943 22.107 1.00 91.73 N
ATOM 17 C5 G A 73 16.006 -40.250 23.056 1.00 90.77 C
ATOM 18 C6 G A 73 14.663 -39.788 22.989 1.00 91.58 C
ATOM 19 O6 G A 73 13.862 -39.920 22.031 1.00 91.93 O
ATOM 20 N1 G A 73 14.301 -39.122 24.179 1.00 90.50 N
ATOM 21 C2 G A 73 15.129 -38.926 25.276 1.00 89.81 C
ATOM 22 N2 G A 73 14.609 -38.262 26.326 1.00 87.58 N
ATOM 23 N3 G A 73 16.394 -39.362 25.332 1.00 90.30 N
ATOM 24 C4 G A 73 16.764 -40.012 24.187 1.00 90.53 C
ATOM 25 P A A 74 19.709 -45.330 25.720 1.00 93.72 P
ATOM 26 OP1 A A 74 20.424 -46.337 26.535 1.00 91.44 O
ATOM 27 OP2 A A 74 19.520 -45.579 24.267 1.00 95.60 O
ATOM 28 O5' A A 74 18.294 -44.986 26.414 1.00 89.17 O
TER
ATOM 1 O3' A B 75 12.038 -38.622 29.121 1.00 77.04 O
ATOM 2 P A B 76 11.860 -37.089 28.711 1.00 77.06 P
ATOM 3 OP1 A B 76 10.531 -36.563 29.129 1.00 76.31 O
ATOM 4 OP2 A B 76 12.290 -37.064 27.296 1.00 75.25 O
ATOM 5 O5' A B 76 12.941 -36.330 29.633 1.00 76.24 O
ATOM 6 C5' A B 76 12.556 -35.456 30.691 1.00 75.34 C
ATOM 7 C4' A B 76 13.782 -35.009 31.469 1.00 75.91 C
ATOM 8 O4' A B 76 14.763 -36.066 31.604 1.00 75.33 O
ATOM 9 C3' A B 76 14.576 -33.898 30.827 1.00 75.14 C
ATOM 10 O3' A B 76 13.906 -32.680 31.072 1.00 75.57 O
ATOM 11 C2' A B 76 15.888 -34.008 31.585 1.00 74.80 C
ATOM 12 O2' A B 76 15.803 -33.563 32.914 1.00 73.81 O
ATOM 13 C1' A B 76 16.064 -35.509 31.587 1.00 75.10 C
ATOM 14 N9 A B 76 16.766 -36.058 30.440 1.00 75.36 N
ATOM 15 C8 A B 76 16.226 -36.501 29.262 1.00 77.38 C
ATOM 16 N7 A B 76 17.100 -36.979 28.401 1.00 76.19 N
ATOM 17 C5 A B 76 18.303 -36.827 29.070 1.00 74.90 C
ATOM 18 C6 A B 76 19.617 -37.148 28.696 1.00 73.92 C
ATOM 19 N6 A B 76 19.906 -37.689 27.512 1.00 72.51 N
ATOM 20 N1 A B 76 20.601 -36.889 29.584 1.00 73.69 N
ATOM 21 C2 A B 76 20.259 -36.335 30.763 1.00 75.06 C
ATOM 22 N3 A B 76 19.054 -35.992 31.226 1.00 75.33 N
ATOM 23 C4 A B 76 18.113 -36.269 30.322 1.00 74.72 C
ATOM 24 P C B 77 13.366 -31.794 29.864 1.00 73.99 P
ATOM 25 OP1 C B 77 12.949 -30.510 30.473 1.00 72.59 O
ATOM 26 OP2 C B 77 12.383 -32.617 29.145 1.00 72.38 O
ATOM 27 O5' C B 77 14.634 -31.653 28.882 1.00 70.76 O
TER
ATOM 2 P G A 73 21.717 -43.682 20.883 1.00101.70 P
ATOM 3 OP1 G A 73 22.799 -44.607 21.294 1.00100.33 O
ATOM 4 OP2 G A 73 20.591 -44.172 20.055 1.00101.13 O
ATOM 5 O5' G A 73 21.013 -42.978 22.154 1.00 99.90 O
ATOM 6 C5' G A 73 21.846 -42.481 23.224 1.00 98.73 C
ATOM 7 C4' G A 73 21.062 -41.942 24.411 1.00 96.83 C
ATOM 8 O4' G A 73 20.348 -40.740 24.032 1.00 95.84 O
ATOM 9 C3' G A 73 19.957 -42.845 24.941 1.00 95.07 C
ATOM 10 O3' G A 73 20.482 -43.923 25.743 1.00 94.72 O
ATOM 11 C2' G A 73 19.092 -41.855 25.716 1.00 93.36 C
ATOM 12 O2' G A 73 19.571 -41.576 27.009 1.00 91.74 O
ATOM 13 C1' G A 73 19.156 -40.627 24.804 1.00 92.86 C
ATOM 14 N9 G A 73 17.996 -40.572 23.921 1.00 90.89 N
ATOM 15 C8 G A 73 17.910 -41.108 22.666 1.00 90.32 C
ATOM 16 N7 G A 73 16.741 -40.943 22.107 1.00 91.73 N
ATOM 17 C5 G A 73 16.006 -40.250 23.056 1.00 90.77 C
ATOM 18 C6 G A 73 14.663 -39.788 22.989 1.00 91.58 C
ATOM 19 O6 G A 73 13.862 -39.920 22.031 1.00 91.93 O
ATOM 20 N1 G A 73 14.301 -39.122 24.179 1.00 90.50 N
ATOM 21 C2 G A 73 15.129 -38.926 25.276 1.00 89.81 C
ATOM 22 N2 G A 73 14.609 -38.262 26.326 1.00 87.58 N
ATOM 23 N3 G A 73 16.394 -39.362 25.332 1.00 90.30 N
ATOM 24 C4 G A 73 16.764 -40.012 24.187 1.00 90.53 C
ATOM 25 P A A 74 19.709 -45.330 25.720 1.00 93.72 P
ATOM 26 OP1 A A 74 20.424 -46.337 26.535 1.00 91.44 O
ATOM 27 OP2 A A 74 19.520 -45.579 24.267 1.00 95.60 O
ATOM 28 O5' A A 74 18.294 -44.986 26.414 1.00 89.17 O
TER
ATOM 1 O3' A B 75 12.038 -38.622 29.121 1.00 77.04 O
ATOM 2 P A B 76 11.860 -37.089 28.711 1.00 77.06 P
ATOM 3 OP1 A B 76 10.531 -36.563 29.129 1.00 76.31 O
ATOM 4 OP2 A B 76 12.290 -37.064 27.296 1.00 75.25 O
ATOM 5 O5' A B 76 12.941 -36.330 29.633 1.00 76.24 O
ATOM 6 C5' A B 76 12.556 -35.456 30.691 1.00 75.34 C
ATOM 7 C4' A B 76 13.782 -35.009 31.469 1.00 75.91 C
ATOM 8 O4' A B 76 14.763 -36.066 31.604 1.00 75.33 O
ATOM 9 C3' A B 76 14.576 -33.898 30.827 1.00 75.14 C
ATOM 10 O3' A B 76 13.906 -32.680 31.072 1.00 75.57 O
ATOM 11 C2' A B 76 15.888 -34.008 31.585 1.00 74.80 C
ATOM 12 O2' A B 76 15.803 -33.563 32.914 1.00 73.81 O
ATOM 13 C1' A B 76 16.064 -35.509 31.587 1.00 75.10 C
ATOM 14 N9 A B 76 16.766 -36.058 30.440 1.00 75.36 N
ATOM 15 C8 A B 76 16.226 -36.501 29.262 1.00 77.38 C
ATOM 16 N7 A B 76 17.100 -36.979 28.401 1.00 76.19 N
ATOM 17 C5 A B 76 18.303 -36.827 29.070 1.00 74.90 C
ATOM 18 C6 A B 76 19.617 -37.148 28.696 1.00 73.92 C
ATOM 19 N6 A B 76 19.906 -37.689 27.512 1.00 72.51 N
ATOM 20 N1 A B 76 20.601 -36.889 29.584 1.00 73.69 N
ATOM 21 C2 A B 76 20.259 -36.335 30.763 1.00 75.06 C
ATOM 22 N3 A B 76 19.054 -35.992 31.226 1.00 75.33 N
ATOM 23 C4 A B 76 18.113 -36.269 30.322 1.00 74.72 C
ATOM 24 P C B 77 13.366 -31.794 29.864 1.00 73.99 P
ATOM 25 OP1 C B 77 12.949 -30.510 30.473 1.00 72.59 O
ATOM 26 OP2 C B 77 12.383 -32.617 29.145 1.00 72.38 O
ATOM 27 O5' C B 77 14.634 -31.653 28.882 1.00 70.76 O
TER
Atoms:
OP1: (22.799,-44.607,21.294)
OP2: (20.591,-44.172,20.055)
C3': (19.957,-42.845,24.941)
C1': (19.156,-40.627,24.804)
C5': (21.846,-42.481,23.224)
O6: (13.862,-39.920,22.031)
O4': (20.348,-40.740,24.032)
C8: (17.910,-41.108,22.666)
C2: (15.129,-38.926,25.276)
C6: (14.663,-39.788,22.989)
C5: (16.006,-40.250,23.056)
C4: (16.764,-40.012,24.187)
P: (21.717,-43.682,20.883)
C4': (21.062,-41.942,24.411)
C2': (19.092,-41.855,25.716)
O2': (19.571,-41.576,27.009)
N1: (14.301,-39.122,24.179)
N2: (14.609,-38.262,26.326)
N3: (16.394,-39.362,25.332)
N7: (16.741,-40.943,22.107)
N9: (17.996,-40.572,23.921)
O5': (21.013,-42.978,22.154)
O3': (20.482,-43.923,25.743)
OP2: (20.591,-44.172,20.055)
C3': (19.957,-42.845,24.941)
C1': (19.156,-40.627,24.804)
C5': (21.846,-42.481,23.224)
O6: (13.862,-39.920,22.031)
O4': (20.348,-40.740,24.032)
C8: (17.910,-41.108,22.666)
C2: (15.129,-38.926,25.276)
C6: (14.663,-39.788,22.989)
C5: (16.006,-40.250,23.056)
C4: (16.764,-40.012,24.187)
P: (21.717,-43.682,20.883)
C4': (21.062,-41.942,24.411)
C2': (19.092,-41.855,25.716)
O2': (19.571,-41.576,27.009)
N1: (14.301,-39.122,24.179)
N2: (14.609,-38.262,26.326)
N3: (16.394,-39.362,25.332)
N7: (16.741,-40.943,22.107)
N9: (17.996,-40.572,23.921)
O5': (21.013,-42.978,22.154)
O3': (20.482,-43.923,25.743)
OP1: (10.531,-36.563,29.129)
OP2: (12.290,-37.064,27.296)
C3': (14.576,-33.898,30.827)
C1': (16.064,-35.509,31.587)
C5': (12.556,-35.456,30.691)
O4': (14.763,-36.066,31.604)
C8: (16.226,-36.501,29.262)
O2': (15.803,-33.563,32.914)
C6: (19.617,-37.148,28.696)
C5: (18.303,-36.827,29.070)
C4: (18.113,-36.269,30.322)
P: (11.860,-37.089,28.711)
C4': (13.782,-35.009,31.469)
C2': (15.888,-34.008,31.585)
C2: (20.259,-36.335,30.763)
N1: (20.601,-36.889,29.584)
N3: (19.054,-35.992,31.226)
N6: (19.906,-37.689,27.512)
N7: (17.100,-36.979,28.401)
N9: (16.766,-36.058,30.440)
O5': (12.941,-36.330,29.633)
O3': (13.906,-32.680,31.072)
OP2: (12.290,-37.064,27.296)
C3': (14.576,-33.898,30.827)
C1': (16.064,-35.509,31.587)
C5': (12.556,-35.456,30.691)
O4': (14.763,-36.066,31.604)
C8: (16.226,-36.501,29.262)
O2': (15.803,-33.563,32.914)
C6: (19.617,-37.148,28.696)
C5: (18.303,-36.827,29.070)
C4: (18.113,-36.269,30.322)
P: (11.860,-37.089,28.711)
C4': (13.782,-35.009,31.469)
C2': (15.888,-34.008,31.585)
C2: (20.259,-36.335,30.763)
N1: (20.601,-36.889,29.584)
N3: (19.054,-35.992,31.226)
N6: (19.906,-37.689,27.512)
N7: (17.100,-36.979,28.401)
N9: (16.766,-36.058,30.440)
O5': (12.941,-36.330,29.633)
O3': (13.906,-32.680,31.072)
Image (generated by PyMOL):