Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0576:0557
Extra
PDB:
ATOM 1 O3' A A 575 -8.725 87.185 110.807 1.00 76.03 O
ATOM 2 P G A 576 -9.211 85.943 109.906 1.00 78.92 P
ATOM 3 OP1 G A 576 -10.692 85.992 109.866 1.00 80.21 O
ATOM 4 OP2 G A 576 -8.532 84.714 110.389 1.00 78.24 O
ATOM 5 O5' G A 576 -8.691 86.289 108.436 1.00 78.64 O
ATOM 6 C5' G A 576 -7.327 86.686 108.207 1.00 77.66 C
ATOM 7 C4' G A 576 -7.229 88.195 108.092 1.00 77.55 C
ATOM 8 O4' G A 576 -5.961 88.652 108.620 1.00 77.04 O
ATOM 9 C3' G A 576 -7.331 88.830 106.713 1.00 76.93 C
ATOM 10 O3' G A 576 -7.776 90.171 106.953 1.00 78.12 O
ATOM 11 C2' G A 576 -5.871 88.792 106.263 1.00 75.83 C
ATOM 12 O2' G A 576 -5.561 89.716 105.240 1.00 75.20 O
ATOM 13 C1' G A 576 -5.162 89.159 107.570 1.00 74.57 C
ATOM 14 N9 G A 576 -3.818 88.641 107.792 1.00 71.61 N
ATOM 15 C8 G A 576 -3.234 87.521 107.250 1.00 70.49 C
ATOM 16 N7 G A 576 -2.049 87.281 107.735 1.00 69.47 N
ATOM 17 C5 G A 576 -1.832 88.316 108.634 1.00 69.88 C
ATOM 18 C6 G A 576 -0.730 88.581 109.479 1.00 69.82 C
ATOM 19 O6 G A 576 0.311 87.923 109.617 1.00 70.28 O
ATOM 20 N1 G A 576 -0.926 89.743 110.222 1.00 69.58 N
ATOM 21 C2 G A 576 -2.042 90.540 110.166 1.00 68.95 C
ATOM 22 N2 G A 576 -2.043 91.623 110.955 1.00 68.58 N
ATOM 23 N3 G A 576 -3.077 90.295 109.393 1.00 68.93 N
ATOM 24 C4 G A 576 -2.906 89.174 108.660 1.00 69.98 C
ATOM 25 P U A 577 -8.218 91.126 105.736 1.00 78.62 P
ATOM 26 OP1 U A 577 -8.853 90.288 104.679 1.00 78.22 O
ATOM 27 OP2 U A 577 -7.076 92.002 105.390 1.00 78.40 O
ATOM 28 O5' U A 577 -9.318 92.066 106.404 1.00 78.10 O
TER
ATOM 1 O3' G B 556 0.341 94.803 112.598 1.00 59.98 O
ATOM 2 P A B 557 -0.048 93.588 113.576 1.00 60.27 P
ATOM 3 OP1 A B 557 0.680 93.866 114.833 1.00 59.76 O
ATOM 4 OP2 A B 557 0.124 92.276 112.897 1.00 58.70 O
ATOM 5 O5' A B 557 -1.611 93.781 113.802 1.00 63.40 O
ATOM 6 C5' A B 557 -2.141 94.113 115.095 1.00 64.08 C
ATOM 7 C4' A B 557 -2.048 95.597 115.313 1.00 64.86 C
ATOM 8 O4' A B 557 -2.529 96.291 114.134 1.00 64.26 O
ATOM 9 C3' A B 557 -2.888 96.126 116.453 1.00 66.14 C
ATOM 10 O3' A B 557 -2.237 95.961 117.704 1.00 69.81 O
ATOM 11 C2' A B 557 -3.131 97.569 116.028 1.00 65.06 C
ATOM 12 O2' A B 557 -2.038 98.436 116.248 1.00 62.99 O
ATOM 13 C1' A B 557 -3.333 97.388 114.522 1.00 64.24 C
ATOM 14 N9 A B 557 -4.716 97.044 114.200 1.00 64.26 N
ATOM 15 C8 A B 557 -5.183 95.874 113.650 1.00 64.27 C
ATOM 16 N7 A B 557 -6.484 95.841 113.505 1.00 64.34 N
ATOM 17 C5 A B 557 -6.902 97.075 113.981 1.00 64.28 C
ATOM 18 C6 A B 557 -8.169 97.659 114.092 1.00 64.41 C
ATOM 19 N6 A B 557 -9.295 97.049 113.716 1.00 64.68 N
ATOM 20 N1 A B 557 -8.243 98.907 114.609 1.00 64.89 N
ATOM 21 C2 A B 557 -7.108 99.516 114.983 1.00 63.98 C
ATOM 22 N3 A B 557 -5.858 99.070 114.925 1.00 63.75 N
ATOM 23 C4 A B 557 -5.823 97.828 114.408 1.00 64.24 C
ATOM 24 P C B 558 -3.114 95.717 119.028 1.00 73.32 P
ATOM 25 OP1 C B 558 -2.175 95.459 120.153 1.00 73.29 O
ATOM 26 OP2 C B 558 -4.172 94.715 118.714 1.00 70.31 O
ATOM 27 O5' C B 558 -3.762 97.148 119.287 1.00 72.72 O
TER
ATOM 2 P G A 576 -9.211 85.943 109.906 1.00 78.92 P
ATOM 3 OP1 G A 576 -10.692 85.992 109.866 1.00 80.21 O
ATOM 4 OP2 G A 576 -8.532 84.714 110.389 1.00 78.24 O
ATOM 5 O5' G A 576 -8.691 86.289 108.436 1.00 78.64 O
ATOM 6 C5' G A 576 -7.327 86.686 108.207 1.00 77.66 C
ATOM 7 C4' G A 576 -7.229 88.195 108.092 1.00 77.55 C
ATOM 8 O4' G A 576 -5.961 88.652 108.620 1.00 77.04 O
ATOM 9 C3' G A 576 -7.331 88.830 106.713 1.00 76.93 C
ATOM 10 O3' G A 576 -7.776 90.171 106.953 1.00 78.12 O
ATOM 11 C2' G A 576 -5.871 88.792 106.263 1.00 75.83 C
ATOM 12 O2' G A 576 -5.561 89.716 105.240 1.00 75.20 O
ATOM 13 C1' G A 576 -5.162 89.159 107.570 1.00 74.57 C
ATOM 14 N9 G A 576 -3.818 88.641 107.792 1.00 71.61 N
ATOM 15 C8 G A 576 -3.234 87.521 107.250 1.00 70.49 C
ATOM 16 N7 G A 576 -2.049 87.281 107.735 1.00 69.47 N
ATOM 17 C5 G A 576 -1.832 88.316 108.634 1.00 69.88 C
ATOM 18 C6 G A 576 -0.730 88.581 109.479 1.00 69.82 C
ATOM 19 O6 G A 576 0.311 87.923 109.617 1.00 70.28 O
ATOM 20 N1 G A 576 -0.926 89.743 110.222 1.00 69.58 N
ATOM 21 C2 G A 576 -2.042 90.540 110.166 1.00 68.95 C
ATOM 22 N2 G A 576 -2.043 91.623 110.955 1.00 68.58 N
ATOM 23 N3 G A 576 -3.077 90.295 109.393 1.00 68.93 N
ATOM 24 C4 G A 576 -2.906 89.174 108.660 1.00 69.98 C
ATOM 25 P U A 577 -8.218 91.126 105.736 1.00 78.62 P
ATOM 26 OP1 U A 577 -8.853 90.288 104.679 1.00 78.22 O
ATOM 27 OP2 U A 577 -7.076 92.002 105.390 1.00 78.40 O
ATOM 28 O5' U A 577 -9.318 92.066 106.404 1.00 78.10 O
TER
ATOM 1 O3' G B 556 0.341 94.803 112.598 1.00 59.98 O
ATOM 2 P A B 557 -0.048 93.588 113.576 1.00 60.27 P
ATOM 3 OP1 A B 557 0.680 93.866 114.833 1.00 59.76 O
ATOM 4 OP2 A B 557 0.124 92.276 112.897 1.00 58.70 O
ATOM 5 O5' A B 557 -1.611 93.781 113.802 1.00 63.40 O
ATOM 6 C5' A B 557 -2.141 94.113 115.095 1.00 64.08 C
ATOM 7 C4' A B 557 -2.048 95.597 115.313 1.00 64.86 C
ATOM 8 O4' A B 557 -2.529 96.291 114.134 1.00 64.26 O
ATOM 9 C3' A B 557 -2.888 96.126 116.453 1.00 66.14 C
ATOM 10 O3' A B 557 -2.237 95.961 117.704 1.00 69.81 O
ATOM 11 C2' A B 557 -3.131 97.569 116.028 1.00 65.06 C
ATOM 12 O2' A B 557 -2.038 98.436 116.248 1.00 62.99 O
ATOM 13 C1' A B 557 -3.333 97.388 114.522 1.00 64.24 C
ATOM 14 N9 A B 557 -4.716 97.044 114.200 1.00 64.26 N
ATOM 15 C8 A B 557 -5.183 95.874 113.650 1.00 64.27 C
ATOM 16 N7 A B 557 -6.484 95.841 113.505 1.00 64.34 N
ATOM 17 C5 A B 557 -6.902 97.075 113.981 1.00 64.28 C
ATOM 18 C6 A B 557 -8.169 97.659 114.092 1.00 64.41 C
ATOM 19 N6 A B 557 -9.295 97.049 113.716 1.00 64.68 N
ATOM 20 N1 A B 557 -8.243 98.907 114.609 1.00 64.89 N
ATOM 21 C2 A B 557 -7.108 99.516 114.983 1.00 63.98 C
ATOM 22 N3 A B 557 -5.858 99.070 114.925 1.00 63.75 N
ATOM 23 C4 A B 557 -5.823 97.828 114.408 1.00 64.24 C
ATOM 24 P C B 558 -3.114 95.717 119.028 1.00 73.32 P
ATOM 25 OP1 C B 558 -2.175 95.459 120.153 1.00 73.29 O
ATOM 26 OP2 C B 558 -4.172 94.715 118.714 1.00 70.31 O
ATOM 27 O5' C B 558 -3.762 97.148 119.287 1.00 72.72 O
TER
Atoms:
OP1: (-10.692,85.992,109.866)
OP2: (-8.532,84.714,110.389)
C3': (-7.331,88.830,106.713)
C1': (-5.162,89.159,107.570)
C5': (-7.327,86.686,108.207)
O6: (0.311,87.923,109.617)
O4': (-5.961,88.652,108.620)
C8: (-3.234,87.521,107.250)
C2: (-2.042,90.540,110.166)
C6: (-0.730,88.581,109.479)
C5: (-1.832,88.316,108.634)
C4: (-2.906,89.174,108.660)
P: (-9.211,85.943,109.906)
C4': (-7.229,88.195,108.092)
C2': (-5.871,88.792,106.263)
O2': (-5.561,89.716,105.240)
N1: (-0.926,89.743,110.222)
N2: (-2.043,91.623,110.955)
N3: (-3.077,90.295,109.393)
N7: (-2.049,87.281,107.735)
N9: (-3.818,88.641,107.792)
O5': (-8.691,86.289,108.436)
O3': (-7.776,90.171,106.953)
OP2: (-8.532,84.714,110.389)
C3': (-7.331,88.830,106.713)
C1': (-5.162,89.159,107.570)
C5': (-7.327,86.686,108.207)
O6: (0.311,87.923,109.617)
O4': (-5.961,88.652,108.620)
C8: (-3.234,87.521,107.250)
C2: (-2.042,90.540,110.166)
C6: (-0.730,88.581,109.479)
C5: (-1.832,88.316,108.634)
C4: (-2.906,89.174,108.660)
P: (-9.211,85.943,109.906)
C4': (-7.229,88.195,108.092)
C2': (-5.871,88.792,106.263)
O2': (-5.561,89.716,105.240)
N1: (-0.926,89.743,110.222)
N2: (-2.043,91.623,110.955)
N3: (-3.077,90.295,109.393)
N7: (-2.049,87.281,107.735)
N9: (-3.818,88.641,107.792)
O5': (-8.691,86.289,108.436)
O3': (-7.776,90.171,106.953)
OP1: (0.680,93.866,114.833)
OP2: (0.124,92.276,112.897)
C3': (-2.888,96.126,116.453)
C1': (-3.333,97.388,114.522)
C5': (-2.141,94.113,115.095)
O4': (-2.529,96.291,114.134)
C8: (-5.183,95.874,113.650)
O2': (-2.038,98.436,116.248)
C6: (-8.169,97.659,114.092)
C5: (-6.902,97.075,113.981)
C4: (-5.823,97.828,114.408)
P: (-0.048,93.588,113.576)
C4': (-2.048,95.597,115.313)
C2': (-3.131,97.569,116.028)
C2: (-7.108,99.516,114.983)
N1: (-8.243,98.907,114.609)
N3: (-5.858,99.070,114.925)
N6: (-9.295,97.049,113.716)
N7: (-6.484,95.841,113.505)
N9: (-4.716,97.044,114.200)
O5': (-1.611,93.781,113.802)
O3': (-2.237,95.961,117.704)
OP2: (0.124,92.276,112.897)
C3': (-2.888,96.126,116.453)
C1': (-3.333,97.388,114.522)
C5': (-2.141,94.113,115.095)
O4': (-2.529,96.291,114.134)
C8: (-5.183,95.874,113.650)
O2': (-2.038,98.436,116.248)
C6: (-8.169,97.659,114.092)
C5: (-6.902,97.075,113.981)
C4: (-5.823,97.828,114.408)
P: (-0.048,93.588,113.576)
C4': (-2.048,95.597,115.313)
C2': (-3.131,97.569,116.028)
C2: (-7.108,99.516,114.983)
N1: (-8.243,98.907,114.609)
N3: (-5.858,99.070,114.925)
N6: (-9.295,97.049,113.716)
N7: (-6.484,95.841,113.505)
N9: (-4.716,97.044,114.200)
O5': (-1.611,93.781,113.802)
O3': (-2.237,95.961,117.704)
Image (generated by PyMOL):