Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3KNI:A513:A516
Extra
PDB:
ATOM 1 O3' U A 512 35.445-113.745 -37.447 1.00 61.47 O
ATOM 2 P G A 513 36.383-115.008 -37.806 1.00 54.81 P
ATOM 3 OP1 G A 513 35.937-115.593 -39.097 1.00 53.48 O
ATOM 4 OP2 G A 513 36.422-115.854 -36.581 1.00 52.56 O
ATOM 5 O5' G A 513 37.815-114.347 -38.041 1.00 62.78 O
ATOM 6 C5' G A 513 37.963-113.250 -38.954 1.00 64.43 C
ATOM 7 C4' G A 513 39.281-112.528 -38.735 1.00 64.99 C
ATOM 8 O4' G A 513 39.267-111.843 -37.450 1.00 64.38 O
ATOM 9 C3' G A 513 40.523-113.400 -38.678 1.00 63.19 C
ATOM 10 O3' G A 513 41.005-113.819 -39.954 1.00 62.39 O
ATOM 11 C2' G A 513 41.497-112.531 -37.890 1.00 63.70 C
ATOM 12 O2' G A 513 42.147-111.541 -38.666 1.00 62.45 O
ATOM 13 C1' G A 513 40.564-111.875 -36.873 1.00 61.47 C
ATOM 14 N9 G A 513 40.523-112.659 -35.634 1.00 59.11 N
ATOM 15 C8 G A 513 39.743-113.763 -35.362 1.00 61.11 C
ATOM 16 N7 G A 513 39.974-114.279 -34.179 1.00 64.16 N
ATOM 17 C5 G A 513 40.955-113.463 -33.629 1.00 60.00 C
ATOM 18 C6 G A 513 41.618-113.533 -32.366 1.00 55.78 C
ATOM 19 O6 G A 513 41.460-114.355 -31.446 1.00 56.34 O
ATOM 20 N1 G A 513 42.552-112.513 -32.228 1.00 50.66 N
ATOM 21 C2 G A 513 42.826-111.549 -33.185 1.00 57.58 C
ATOM 22 N2 G A 513 43.788-110.649 -32.892 1.00 57.93 N
ATOM 23 N3 G A 513 42.213-111.470 -34.351 1.00 61.22 N
ATOM 24 C4 G A 513 41.299-112.451 -34.510 1.00 59.80 C
ATOM 25 P A A 514 41.426-115.366 -40.168 1.00 76.49 P
ATOM 26 OP1 A A 514 41.314-115.684 -41.624 1.00 70.98 O
ATOM 27 OP2 A A 514 40.666-116.174 -39.170 1.00 75.33 O
ATOM 28 O5' A A 514 42.965-115.404 -39.737 1.00 60.52 O
TER
ATOM 1 O3' A B 515 47.052-111.868 -31.923 1.00 41.16 O
ATOM 2 P A B 516 46.112-112.427 -30.759 1.00 49.47 P
ATOM 3 OP1 A B 516 47.028-113.128 -29.817 1.00 43.00 O
ATOM 4 OP2 A B 516 44.962-113.172 -31.354 1.00 51.12 O
ATOM 5 O5' A B 516 45.640-111.074 -30.066 1.00 46.33 O
ATOM 6 C5' A B 516 46.564-109.995 -29.959 1.00 53.08 C
ATOM 7 C4' A B 516 45.874-108.690 -29.615 1.00 57.13 C
ATOM 8 O4' A B 516 45.111-108.129 -30.722 1.00 51.80 O
ATOM 9 C3' A B 516 44.994-108.639 -28.371 1.00 62.71 C
ATOM 10 O3' A B 516 45.435-107.590 -27.517 1.00 56.69 O
ATOM 11 C2' A B 516 43.589-108.411 -28.935 1.00 64.51 C
ATOM 12 O2' A B 516 42.686-107.729 -28.075 1.00 66.55 O
ATOM 13 C1' A B 516 43.880-107.644 -30.230 1.00 62.05 C
ATOM 14 N9 A B 516 42.849-107.850 -31.248 1.00 59.45 N
ATOM 15 C8 A B 516 42.155-108.995 -31.539 1.00 56.80 C
ATOM 16 N7 A B 516 41.260-108.844 -32.477 1.00 63.48 N
ATOM 17 C5 A B 516 41.371-107.508 -32.830 1.00 65.29 C
ATOM 18 C6 A B 516 40.672-106.709 -33.749 1.00 65.45 C
ATOM 19 N6 A B 516 39.669-107.143 -34.514 1.00 67.89 N
ATOM 20 N1 A B 516 41.035-105.421 -33.851 1.00 58.73 N
ATOM 21 C2 A B 516 42.014-104.969 -33.075 1.00 58.25 C
ATOM 22 N3 A B 516 42.734-105.608 -32.169 1.00 61.61 N
ATOM 23 C4 A B 516 42.358-106.891 -32.093 1.00 62.59 C
ATOM 24 P U B 517 45.958-107.946 -26.044 1.00 61.65 P
ATOM 25 OP1 U B 517 46.483-109.344 -26.044 1.00 63.67 O
ATOM 26 OP2 U B 517 44.859-107.567 -25.114 1.00 63.94 O
ATOM 27 O5' U B 517 47.203-106.985 -25.788 1.00 66.66 O
TER
ATOM 2 P G A 513 36.383-115.008 -37.806 1.00 54.81 P
ATOM 3 OP1 G A 513 35.937-115.593 -39.097 1.00 53.48 O
ATOM 4 OP2 G A 513 36.422-115.854 -36.581 1.00 52.56 O
ATOM 5 O5' G A 513 37.815-114.347 -38.041 1.00 62.78 O
ATOM 6 C5' G A 513 37.963-113.250 -38.954 1.00 64.43 C
ATOM 7 C4' G A 513 39.281-112.528 -38.735 1.00 64.99 C
ATOM 8 O4' G A 513 39.267-111.843 -37.450 1.00 64.38 O
ATOM 9 C3' G A 513 40.523-113.400 -38.678 1.00 63.19 C
ATOM 10 O3' G A 513 41.005-113.819 -39.954 1.00 62.39 O
ATOM 11 C2' G A 513 41.497-112.531 -37.890 1.00 63.70 C
ATOM 12 O2' G A 513 42.147-111.541 -38.666 1.00 62.45 O
ATOM 13 C1' G A 513 40.564-111.875 -36.873 1.00 61.47 C
ATOM 14 N9 G A 513 40.523-112.659 -35.634 1.00 59.11 N
ATOM 15 C8 G A 513 39.743-113.763 -35.362 1.00 61.11 C
ATOM 16 N7 G A 513 39.974-114.279 -34.179 1.00 64.16 N
ATOM 17 C5 G A 513 40.955-113.463 -33.629 1.00 60.00 C
ATOM 18 C6 G A 513 41.618-113.533 -32.366 1.00 55.78 C
ATOM 19 O6 G A 513 41.460-114.355 -31.446 1.00 56.34 O
ATOM 20 N1 G A 513 42.552-112.513 -32.228 1.00 50.66 N
ATOM 21 C2 G A 513 42.826-111.549 -33.185 1.00 57.58 C
ATOM 22 N2 G A 513 43.788-110.649 -32.892 1.00 57.93 N
ATOM 23 N3 G A 513 42.213-111.470 -34.351 1.00 61.22 N
ATOM 24 C4 G A 513 41.299-112.451 -34.510 1.00 59.80 C
ATOM 25 P A A 514 41.426-115.366 -40.168 1.00 76.49 P
ATOM 26 OP1 A A 514 41.314-115.684 -41.624 1.00 70.98 O
ATOM 27 OP2 A A 514 40.666-116.174 -39.170 1.00 75.33 O
ATOM 28 O5' A A 514 42.965-115.404 -39.737 1.00 60.52 O
TER
ATOM 1 O3' A B 515 47.052-111.868 -31.923 1.00 41.16 O
ATOM 2 P A B 516 46.112-112.427 -30.759 1.00 49.47 P
ATOM 3 OP1 A B 516 47.028-113.128 -29.817 1.00 43.00 O
ATOM 4 OP2 A B 516 44.962-113.172 -31.354 1.00 51.12 O
ATOM 5 O5' A B 516 45.640-111.074 -30.066 1.00 46.33 O
ATOM 6 C5' A B 516 46.564-109.995 -29.959 1.00 53.08 C
ATOM 7 C4' A B 516 45.874-108.690 -29.615 1.00 57.13 C
ATOM 8 O4' A B 516 45.111-108.129 -30.722 1.00 51.80 O
ATOM 9 C3' A B 516 44.994-108.639 -28.371 1.00 62.71 C
ATOM 10 O3' A B 516 45.435-107.590 -27.517 1.00 56.69 O
ATOM 11 C2' A B 516 43.589-108.411 -28.935 1.00 64.51 C
ATOM 12 O2' A B 516 42.686-107.729 -28.075 1.00 66.55 O
ATOM 13 C1' A B 516 43.880-107.644 -30.230 1.00 62.05 C
ATOM 14 N9 A B 516 42.849-107.850 -31.248 1.00 59.45 N
ATOM 15 C8 A B 516 42.155-108.995 -31.539 1.00 56.80 C
ATOM 16 N7 A B 516 41.260-108.844 -32.477 1.00 63.48 N
ATOM 17 C5 A B 516 41.371-107.508 -32.830 1.00 65.29 C
ATOM 18 C6 A B 516 40.672-106.709 -33.749 1.00 65.45 C
ATOM 19 N6 A B 516 39.669-107.143 -34.514 1.00 67.89 N
ATOM 20 N1 A B 516 41.035-105.421 -33.851 1.00 58.73 N
ATOM 21 C2 A B 516 42.014-104.969 -33.075 1.00 58.25 C
ATOM 22 N3 A B 516 42.734-105.608 -32.169 1.00 61.61 N
ATOM 23 C4 A B 516 42.358-106.891 -32.093 1.00 62.59 C
ATOM 24 P U B 517 45.958-107.946 -26.044 1.00 61.65 P
ATOM 25 OP1 U B 517 46.483-109.344 -26.044 1.00 63.67 O
ATOM 26 OP2 U B 517 44.859-107.567 -25.114 1.00 63.94 O
ATOM 27 O5' U B 517 47.203-106.985 -25.788 1.00 66.66 O
TER
Atoms:
OP1: (35.937,-115.593,-39.097)
OP2: (36.422,-115.854,-36.581)
C3': (40.523,-113.400,-38.678)
C1': (40.564,-111.875,-36.873)
C5': (37.963,-113.250,-38.954)
O6: (41.460,-114.355,-31.446)
O4': (39.267,-111.843,-37.450)
C8: (39.743,-113.763,-35.362)
C2: (42.826,-111.549,-33.185)
C6: (41.618,-113.533,-32.366)
C5: (40.955,-113.463,-33.629)
C4: (41.299,-112.451,-34.510)
P: (36.383,-115.008,-37.806)
C4': (39.281,-112.528,-38.735)
C2': (41.497,-112.531,-37.890)
O2': (42.147,-111.541,-38.666)
N1: (42.552,-112.513,-32.228)
N2: (43.788,-110.649,-32.892)
N3: (42.213,-111.470,-34.351)
N7: (39.974,-114.279,-34.179)
N9: (40.523,-112.659,-35.634)
O5': (37.815,-114.347,-38.041)
O3': (41.005,-113.819,-39.954)
OP2: (36.422,-115.854,-36.581)
C3': (40.523,-113.400,-38.678)
C1': (40.564,-111.875,-36.873)
C5': (37.963,-113.250,-38.954)
O6: (41.460,-114.355,-31.446)
O4': (39.267,-111.843,-37.450)
C8: (39.743,-113.763,-35.362)
C2: (42.826,-111.549,-33.185)
C6: (41.618,-113.533,-32.366)
C5: (40.955,-113.463,-33.629)
C4: (41.299,-112.451,-34.510)
P: (36.383,-115.008,-37.806)
C4': (39.281,-112.528,-38.735)
C2': (41.497,-112.531,-37.890)
O2': (42.147,-111.541,-38.666)
N1: (42.552,-112.513,-32.228)
N2: (43.788,-110.649,-32.892)
N3: (42.213,-111.470,-34.351)
N7: (39.974,-114.279,-34.179)
N9: (40.523,-112.659,-35.634)
O5': (37.815,-114.347,-38.041)
O3': (41.005,-113.819,-39.954)
OP1: (47.028,-113.128,-29.817)
OP2: (44.962,-113.172,-31.354)
C3': (44.994,-108.639,-28.371)
C1': (43.880,-107.644,-30.230)
C5': (46.564,-109.995,-29.959)
O4': (45.111,-108.129,-30.722)
C8: (42.155,-108.995,-31.539)
O2': (42.686,-107.729,-28.075)
C6: (40.672,-106.709,-33.749)
C5: (41.371,-107.508,-32.830)
C4: (42.358,-106.891,-32.093)
P: (46.112,-112.427,-30.759)
C4': (45.874,-108.690,-29.615)
C2': (43.589,-108.411,-28.935)
C2: (42.014,-104.969,-33.075)
N1: (41.035,-105.421,-33.851)
N3: (42.734,-105.608,-32.169)
N6: (39.669,-107.143,-34.514)
N7: (41.260,-108.844,-32.477)
N9: (42.849,-107.850,-31.248)
O5': (45.640,-111.074,-30.066)
O3': (45.435,-107.590,-27.517)
OP2: (44.962,-113.172,-31.354)
C3': (44.994,-108.639,-28.371)
C1': (43.880,-107.644,-30.230)
C5': (46.564,-109.995,-29.959)
O4': (45.111,-108.129,-30.722)
C8: (42.155,-108.995,-31.539)
O2': (42.686,-107.729,-28.075)
C6: (40.672,-106.709,-33.749)
C5: (41.371,-107.508,-32.830)
C4: (42.358,-106.891,-32.093)
P: (46.112,-112.427,-30.759)
C4': (45.874,-108.690,-29.615)
C2': (43.589,-108.411,-28.935)
C2: (42.014,-104.969,-33.075)
N1: (41.035,-105.421,-33.851)
N3: (42.734,-105.608,-32.169)
N6: (39.669,-107.143,-34.514)
N7: (41.260,-108.844,-32.477)
N9: (42.849,-107.850,-31.248)
O5': (45.640,-111.074,-30.066)
O3': (45.435,-107.590,-27.517)
Image (generated by PyMOL):