Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A576:A557
Extra
PDB:
ATOM 1 O3' A A 575 -8.938 87.318 110.781 1.00 70.19 O
ATOM 2 P G A 576 -9.273 85.910 110.091 1.00 72.92 P
ATOM 3 OP1 G A 576 -10.742 85.745 109.934 1.00 73.77 O
ATOM 4 OP2 G A 576 -8.502 84.882 110.834 1.00 72.71 O
ATOM 5 O5' G A 576 -8.667 86.068 108.626 1.00 72.08 O
ATOM 6 C5' G A 576 -7.300 86.459 108.443 1.00 69.51 C
ATOM 7 C4' G A 576 -7.188 87.964 108.297 1.00 66.93 C
ATOM 8 O4' G A 576 -5.906 88.381 108.803 1.00 65.07 O
ATOM 9 C3' G A 576 -7.258 88.555 106.893 1.00 65.63 C
ATOM 10 O3' G A 576 -7.581 89.941 107.050 1.00 67.24 O
ATOM 11 C2' G A 576 -5.809 88.436 106.451 1.00 64.05 C
ATOM 12 O2' G A 576 -5.425 89.302 105.404 1.00 63.03 O
ATOM 13 C1' G A 576 -5.113 88.851 107.738 1.00 63.44 C
ATOM 14 N9 G A 576 -3.773 88.338 107.947 1.00 61.60 N
ATOM 15 C8 G A 576 -3.193 87.207 107.425 1.00 59.91 C
ATOM 16 N7 G A 576 -1.992 86.995 107.884 1.00 58.66 N
ATOM 17 C5 G A 576 -1.769 88.059 108.746 1.00 60.21 C
ATOM 18 C6 G A 576 -0.657 88.371 109.546 1.00 61.14 C
ATOM 19 O6 G A 576 0.395 87.739 109.673 1.00 62.02 O
ATOM 20 N1 G A 576 -0.854 89.558 110.257 1.00 61.18 N
ATOM 21 C2 G A 576 -1.981 90.339 110.206 1.00 60.00 C
ATOM 22 N2 G A 576 -1.985 91.450 110.957 1.00 60.61 N
ATOM 23 N3 G A 576 -3.025 90.051 109.471 1.00 59.45 N
ATOM 24 C4 G A 576 -2.853 88.904 108.772 1.00 60.56 C
ATOM 25 P U A 577 -8.051 90.828 105.787 1.00 68.20 P
ATOM 26 OP1 U A 577 -8.779 89.940 104.839 1.00 68.10 O
ATOM 27 OP2 U A 577 -6.932 91.666 105.290 1.00 67.09 O
ATOM 28 O5' U A 577 -9.093 91.838 106.439 1.00 66.77 O
TER
ATOM 1 O3' G B 556 0.493 94.609 112.661 1.00 49.29 O
ATOM 2 P A B 557 0.075 93.396 113.614 1.00 49.33 P
ATOM 3 OP1 A B 557 0.782 93.657 114.874 1.00 49.72 O
ATOM 4 OP2 A B 557 0.269 92.102 112.910 1.00 48.50 O
ATOM 5 O5' A B 557 -1.486 93.607 113.817 1.00 50.81 O
ATOM 6 C5' A B 557 -2.034 93.937 115.098 1.00 51.31 C
ATOM 7 C4' A B 557 -1.861 95.407 115.367 1.00 52.05 C
ATOM 8 O4' A B 557 -2.301 96.178 114.223 1.00 51.78 O
ATOM 9 C3' A B 557 -2.703 95.895 116.520 1.00 53.75 C
ATOM 10 O3' A B 557 -2.082 95.639 117.761 1.00 56.27 O
ATOM 11 C2' A B 557 -2.955 97.354 116.166 1.00 52.78 C
ATOM 12 O2' A B 557 -1.905 98.253 116.452 1.00 52.75 O
ATOM 13 C1' A B 557 -3.137 97.237 114.654 1.00 52.16 C
ATOM 14 N9 A B 557 -4.515 96.897 114.295 1.00 52.40 N
ATOM 15 C8 A B 557 -4.991 95.786 113.641 1.00 52.85 C
ATOM 16 N7 A B 557 -6.289 95.790 113.465 1.00 52.48 N
ATOM 17 C5 A B 557 -6.696 96.981 114.041 1.00 51.81 C
ATOM 18 C6 A B 557 -7.954 97.585 114.171 1.00 51.02 C
ATOM 19 N6 A B 557 -9.083 97.043 113.719 1.00 50.04 N
ATOM 20 N1 A B 557 -8.012 98.784 114.792 1.00 51.95 N
ATOM 21 C2 A B 557 -6.875 99.324 115.257 1.00 51.90 C
ATOM 22 N3 A B 557 -5.638 98.853 115.197 1.00 53.06 N
ATOM 23 C4 A B 557 -5.616 97.668 114.564 1.00 52.45 C
ATOM 24 P C B 558 -2.985 95.322 119.044 1.00 59.55 P
ATOM 25 OP1 C B 558 -2.016 95.014 120.121 1.00 59.08 O
ATOM 26 OP2 C B 558 -4.046 94.333 118.705 1.00 56.30 O
ATOM 27 O5' C B 558 -3.622 96.739 119.389 1.00 59.90 O
TER
ATOM 2 P G A 576 -9.273 85.910 110.091 1.00 72.92 P
ATOM 3 OP1 G A 576 -10.742 85.745 109.934 1.00 73.77 O
ATOM 4 OP2 G A 576 -8.502 84.882 110.834 1.00 72.71 O
ATOM 5 O5' G A 576 -8.667 86.068 108.626 1.00 72.08 O
ATOM 6 C5' G A 576 -7.300 86.459 108.443 1.00 69.51 C
ATOM 7 C4' G A 576 -7.188 87.964 108.297 1.00 66.93 C
ATOM 8 O4' G A 576 -5.906 88.381 108.803 1.00 65.07 O
ATOM 9 C3' G A 576 -7.258 88.555 106.893 1.00 65.63 C
ATOM 10 O3' G A 576 -7.581 89.941 107.050 1.00 67.24 O
ATOM 11 C2' G A 576 -5.809 88.436 106.451 1.00 64.05 C
ATOM 12 O2' G A 576 -5.425 89.302 105.404 1.00 63.03 O
ATOM 13 C1' G A 576 -5.113 88.851 107.738 1.00 63.44 C
ATOM 14 N9 G A 576 -3.773 88.338 107.947 1.00 61.60 N
ATOM 15 C8 G A 576 -3.193 87.207 107.425 1.00 59.91 C
ATOM 16 N7 G A 576 -1.992 86.995 107.884 1.00 58.66 N
ATOM 17 C5 G A 576 -1.769 88.059 108.746 1.00 60.21 C
ATOM 18 C6 G A 576 -0.657 88.371 109.546 1.00 61.14 C
ATOM 19 O6 G A 576 0.395 87.739 109.673 1.00 62.02 O
ATOM 20 N1 G A 576 -0.854 89.558 110.257 1.00 61.18 N
ATOM 21 C2 G A 576 -1.981 90.339 110.206 1.00 60.00 C
ATOM 22 N2 G A 576 -1.985 91.450 110.957 1.00 60.61 N
ATOM 23 N3 G A 576 -3.025 90.051 109.471 1.00 59.45 N
ATOM 24 C4 G A 576 -2.853 88.904 108.772 1.00 60.56 C
ATOM 25 P U A 577 -8.051 90.828 105.787 1.00 68.20 P
ATOM 26 OP1 U A 577 -8.779 89.940 104.839 1.00 68.10 O
ATOM 27 OP2 U A 577 -6.932 91.666 105.290 1.00 67.09 O
ATOM 28 O5' U A 577 -9.093 91.838 106.439 1.00 66.77 O
TER
ATOM 1 O3' G B 556 0.493 94.609 112.661 1.00 49.29 O
ATOM 2 P A B 557 0.075 93.396 113.614 1.00 49.33 P
ATOM 3 OP1 A B 557 0.782 93.657 114.874 1.00 49.72 O
ATOM 4 OP2 A B 557 0.269 92.102 112.910 1.00 48.50 O
ATOM 5 O5' A B 557 -1.486 93.607 113.817 1.00 50.81 O
ATOM 6 C5' A B 557 -2.034 93.937 115.098 1.00 51.31 C
ATOM 7 C4' A B 557 -1.861 95.407 115.367 1.00 52.05 C
ATOM 8 O4' A B 557 -2.301 96.178 114.223 1.00 51.78 O
ATOM 9 C3' A B 557 -2.703 95.895 116.520 1.00 53.75 C
ATOM 10 O3' A B 557 -2.082 95.639 117.761 1.00 56.27 O
ATOM 11 C2' A B 557 -2.955 97.354 116.166 1.00 52.78 C
ATOM 12 O2' A B 557 -1.905 98.253 116.452 1.00 52.75 O
ATOM 13 C1' A B 557 -3.137 97.237 114.654 1.00 52.16 C
ATOM 14 N9 A B 557 -4.515 96.897 114.295 1.00 52.40 N
ATOM 15 C8 A B 557 -4.991 95.786 113.641 1.00 52.85 C
ATOM 16 N7 A B 557 -6.289 95.790 113.465 1.00 52.48 N
ATOM 17 C5 A B 557 -6.696 96.981 114.041 1.00 51.81 C
ATOM 18 C6 A B 557 -7.954 97.585 114.171 1.00 51.02 C
ATOM 19 N6 A B 557 -9.083 97.043 113.719 1.00 50.04 N
ATOM 20 N1 A B 557 -8.012 98.784 114.792 1.00 51.95 N
ATOM 21 C2 A B 557 -6.875 99.324 115.257 1.00 51.90 C
ATOM 22 N3 A B 557 -5.638 98.853 115.197 1.00 53.06 N
ATOM 23 C4 A B 557 -5.616 97.668 114.564 1.00 52.45 C
ATOM 24 P C B 558 -2.985 95.322 119.044 1.00 59.55 P
ATOM 25 OP1 C B 558 -2.016 95.014 120.121 1.00 59.08 O
ATOM 26 OP2 C B 558 -4.046 94.333 118.705 1.00 56.30 O
ATOM 27 O5' C B 558 -3.622 96.739 119.389 1.00 59.90 O
TER
Atoms:
OP1: (-10.742,85.745,109.934)
OP2: (-8.502,84.882,110.834)
C3': (-7.258,88.555,106.893)
C1': (-5.113,88.851,107.738)
C5': (-7.300,86.459,108.443)
O6: (0.395,87.739,109.673)
O4': (-5.906,88.381,108.803)
C8: (-3.193,87.207,107.425)
C2: (-1.981,90.339,110.206)
C6: (-0.657,88.371,109.546)
C5: (-1.769,88.059,108.746)
C4: (-2.853,88.904,108.772)
P: (-9.273,85.910,110.091)
C4': (-7.188,87.964,108.297)
C2': (-5.809,88.436,106.451)
O2': (-5.425,89.302,105.404)
N1: (-0.854,89.558,110.257)
N2: (-1.985,91.450,110.957)
N3: (-3.025,90.051,109.471)
N7: (-1.992,86.995,107.884)
N9: (-3.773,88.338,107.947)
O5': (-8.667,86.068,108.626)
O3': (-7.581,89.941,107.050)
OP2: (-8.502,84.882,110.834)
C3': (-7.258,88.555,106.893)
C1': (-5.113,88.851,107.738)
C5': (-7.300,86.459,108.443)
O6: (0.395,87.739,109.673)
O4': (-5.906,88.381,108.803)
C8: (-3.193,87.207,107.425)
C2: (-1.981,90.339,110.206)
C6: (-0.657,88.371,109.546)
C5: (-1.769,88.059,108.746)
C4: (-2.853,88.904,108.772)
P: (-9.273,85.910,110.091)
C4': (-7.188,87.964,108.297)
C2': (-5.809,88.436,106.451)
O2': (-5.425,89.302,105.404)
N1: (-0.854,89.558,110.257)
N2: (-1.985,91.450,110.957)
N3: (-3.025,90.051,109.471)
N7: (-1.992,86.995,107.884)
N9: (-3.773,88.338,107.947)
O5': (-8.667,86.068,108.626)
O3': (-7.581,89.941,107.050)
OP1: (0.782,93.657,114.874)
OP2: (0.269,92.102,112.910)
C3': (-2.703,95.895,116.520)
C1': (-3.137,97.237,114.654)
C5': (-2.034,93.937,115.098)
O4': (-2.301,96.178,114.223)
C8: (-4.991,95.786,113.641)
O2': (-1.905,98.253,116.452)
C6: (-7.954,97.585,114.171)
C5: (-6.696,96.981,114.041)
C4: (-5.616,97.668,114.564)
P: (0.075,93.396,113.614)
C4': (-1.861,95.407,115.367)
C2': (-2.955,97.354,116.166)
C2: (-6.875,99.324,115.257)
N1: (-8.012,98.784,114.792)
N3: (-5.638,98.853,115.197)
N6: (-9.083,97.043,113.719)
N7: (-6.289,95.790,113.465)
N9: (-4.515,96.897,114.295)
O5': (-1.486,93.607,113.817)
O3': (-2.082,95.639,117.761)
OP2: (0.269,92.102,112.910)
C3': (-2.703,95.895,116.520)
C1': (-3.137,97.237,114.654)
C5': (-2.034,93.937,115.098)
O4': (-2.301,96.178,114.223)
C8: (-4.991,95.786,113.641)
O2': (-1.905,98.253,116.452)
C6: (-7.954,97.585,114.171)
C5: (-6.696,96.981,114.041)
C4: (-5.616,97.668,114.564)
P: (0.075,93.396,113.614)
C4': (-1.861,95.407,115.367)
C2': (-2.955,97.354,116.166)
C2: (-6.875,99.324,115.257)
N1: (-8.012,98.784,114.792)
N3: (-5.638,98.853,115.197)
N6: (-9.083,97.043,113.719)
N7: (-6.289,95.790,113.465)
N9: (-4.515,96.897,114.295)
O5': (-1.486,93.607,113.817)
O3': (-2.082,95.639,117.761)
Image (generated by PyMOL):