Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2009:A2008
Extra
PDB:
ATOM 1 O3' A A2008 -58.593 -71.022 8.377 1.00 0.01 O
ATOM 2 P U A2009 -59.428 -72.007 9.311 1.00 0.01 P
ATOM 3 OP1 U A2009 -60.527 -71.245 9.904 1.00 0.01 O
ATOM 4 OP2 U A2009 -58.468 -72.671 10.197 1.00 0.01 O
ATOM 5 O5' U A2009 -59.995 -73.042 8.291 1.00 0.01 O
ATOM 6 C5' U A2009 -61.132 -72.751 7.521 1.00 0.01 C
ATOM 7 C4' U A2009 -61.243 -73.724 6.390 1.00 0.01 C
ATOM 8 O4' U A2009 -59.914 -74.061 5.945 1.00 0.01 O
ATOM 9 C3' U A2009 -61.886 -75.063 6.718 1.00 0.01 C
ATOM 10 O3' U A2009 -63.289 -75.017 6.613 1.00 0.01 O
ATOM 11 C2' U A2009 -61.259 -75.990 5.704 1.00 0.01 C
ATOM 12 O2' U A2009 -61.953 -75.891 4.476 1.00 0.01 O
ATOM 13 C1' U A2009 -59.870 -75.385 5.521 1.00 0.01 C
ATOM 14 N1 U A2009 -58.850 -76.056 6.289 1.00 0.01 N
ATOM 15 C2 U A2009 -58.515 -77.316 5.913 1.00 0.01 C
ATOM 16 O2 U A2009 -59.083 -77.923 5.035 1.00 0.01 O
ATOM 17 N3 U A2009 -57.519 -77.878 6.628 1.00 0.01 N
ATOM 18 C4 U A2009 -56.820 -77.295 7.650 1.00 0.01 C
ATOM 19 O4 U A2009 -55.941 -77.960 8.230 1.00 0.01 O
ATOM 20 C5 U A2009 -57.215 -75.945 7.940 1.00 0.01 C
ATOM 21 C6 U A2009 -58.198 -75.383 7.260 1.00 0.01 C
ATOM 22 P U A2010 -64.200 -75.518 7.810 1.00 0.01 P
ATOM 23 OP1 U A2010 -65.542 -74.942 7.614 1.00 0.01 O
ATOM 24 OP2 U A2010 -63.487 -75.230 9.044 1.00 0.01 O
ATOM 25 O5' U A2010 -64.250 -77.076 7.585 1.00 0.01 O
TER
ATOM 1 O3' A B2007 -52.686 -72.385 8.296 1.00 0.01 O
ATOM 2 P A B2008 -53.664 -73.342 9.125 1.00 0.01 P
ATOM 3 OP1 A B2008 -53.457 -73.038 10.533 1.00 0.01 O
ATOM 4 OP2 A B2008 -53.458 -74.742 8.653 1.00 0.01 O
ATOM 5 O5' A B2008 -55.066 -72.829 8.686 1.00 0.01 O
ATOM 6 C5' A B2008 -55.467 -71.540 9.038 1.00 0.01 C
ATOM 7 C4' A B2008 -56.197 -70.898 7.923 1.00 0.01 C
ATOM 8 O4' A B2008 -55.412 -71.031 6.737 1.00 0.01 O
ATOM 9 C3' A B2008 -57.534 -71.520 7.577 1.00 0.01 C
ATOM 10 O3' A B2008 -58.593 -71.022 8.377 1.00 0.01 O
ATOM 11 C2' A B2008 -57.688 -71.181 6.118 1.00 0.01 C
ATOM 12 O2' A B2008 -58.210 -69.870 5.972 1.00 0.01 O
ATOM 13 C1' A B2008 -56.238 -71.206 5.634 1.00 0.01 C
ATOM 14 N9 A B2008 -55.887 -72.479 5.011 1.00 0.01 N
ATOM 15 C8 A B2008 -55.684 -73.665 5.637 1.00 0.01 C
ATOM 16 N7 A B2008 -55.373 -74.640 4.824 1.00 0.01 N
ATOM 17 C5 A B2008 -55.356 -74.045 3.596 1.00 0.01 C
ATOM 18 C6 A B2008 -55.084 -74.549 2.346 1.00 0.01 C
ATOM 19 N6 A B2008 -54.802 -75.819 2.134 1.00 0.01 N
ATOM 20 N1 A B2008 -55.121 -73.694 1.317 1.00 0.01 N
ATOM 21 C2 A B2008 -55.423 -72.425 1.544 1.00 0.01 C
ATOM 22 N3 A B2008 -55.710 -71.824 2.691 1.00 0.01 N
ATOM 23 C4 A B2008 -55.660 -72.711 3.689 1.00 0.01 C
ATOM 24 P U B2009 -59.428 -72.007 9.311 1.00 0.01 P
ATOM 25 OP1 U B2009 -60.527 -71.245 9.904 1.00 0.01 O
ATOM 26 OP2 U B2009 -58.468 -72.671 10.197 1.00 0.01 O
ATOM 27 O5' U B2009 -59.995 -73.042 8.291 1.00 0.01 O
TER
ATOM 2 P U A2009 -59.428 -72.007 9.311 1.00 0.01 P
ATOM 3 OP1 U A2009 -60.527 -71.245 9.904 1.00 0.01 O
ATOM 4 OP2 U A2009 -58.468 -72.671 10.197 1.00 0.01 O
ATOM 5 O5' U A2009 -59.995 -73.042 8.291 1.00 0.01 O
ATOM 6 C5' U A2009 -61.132 -72.751 7.521 1.00 0.01 C
ATOM 7 C4' U A2009 -61.243 -73.724 6.390 1.00 0.01 C
ATOM 8 O4' U A2009 -59.914 -74.061 5.945 1.00 0.01 O
ATOM 9 C3' U A2009 -61.886 -75.063 6.718 1.00 0.01 C
ATOM 10 O3' U A2009 -63.289 -75.017 6.613 1.00 0.01 O
ATOM 11 C2' U A2009 -61.259 -75.990 5.704 1.00 0.01 C
ATOM 12 O2' U A2009 -61.953 -75.891 4.476 1.00 0.01 O
ATOM 13 C1' U A2009 -59.870 -75.385 5.521 1.00 0.01 C
ATOM 14 N1 U A2009 -58.850 -76.056 6.289 1.00 0.01 N
ATOM 15 C2 U A2009 -58.515 -77.316 5.913 1.00 0.01 C
ATOM 16 O2 U A2009 -59.083 -77.923 5.035 1.00 0.01 O
ATOM 17 N3 U A2009 -57.519 -77.878 6.628 1.00 0.01 N
ATOM 18 C4 U A2009 -56.820 -77.295 7.650 1.00 0.01 C
ATOM 19 O4 U A2009 -55.941 -77.960 8.230 1.00 0.01 O
ATOM 20 C5 U A2009 -57.215 -75.945 7.940 1.00 0.01 C
ATOM 21 C6 U A2009 -58.198 -75.383 7.260 1.00 0.01 C
ATOM 22 P U A2010 -64.200 -75.518 7.810 1.00 0.01 P
ATOM 23 OP1 U A2010 -65.542 -74.942 7.614 1.00 0.01 O
ATOM 24 OP2 U A2010 -63.487 -75.230 9.044 1.00 0.01 O
ATOM 25 O5' U A2010 -64.250 -77.076 7.585 1.00 0.01 O
TER
ATOM 1 O3' A B2007 -52.686 -72.385 8.296 1.00 0.01 O
ATOM 2 P A B2008 -53.664 -73.342 9.125 1.00 0.01 P
ATOM 3 OP1 A B2008 -53.457 -73.038 10.533 1.00 0.01 O
ATOM 4 OP2 A B2008 -53.458 -74.742 8.653 1.00 0.01 O
ATOM 5 O5' A B2008 -55.066 -72.829 8.686 1.00 0.01 O
ATOM 6 C5' A B2008 -55.467 -71.540 9.038 1.00 0.01 C
ATOM 7 C4' A B2008 -56.197 -70.898 7.923 1.00 0.01 C
ATOM 8 O4' A B2008 -55.412 -71.031 6.737 1.00 0.01 O
ATOM 9 C3' A B2008 -57.534 -71.520 7.577 1.00 0.01 C
ATOM 10 O3' A B2008 -58.593 -71.022 8.377 1.00 0.01 O
ATOM 11 C2' A B2008 -57.688 -71.181 6.118 1.00 0.01 C
ATOM 12 O2' A B2008 -58.210 -69.870 5.972 1.00 0.01 O
ATOM 13 C1' A B2008 -56.238 -71.206 5.634 1.00 0.01 C
ATOM 14 N9 A B2008 -55.887 -72.479 5.011 1.00 0.01 N
ATOM 15 C8 A B2008 -55.684 -73.665 5.637 1.00 0.01 C
ATOM 16 N7 A B2008 -55.373 -74.640 4.824 1.00 0.01 N
ATOM 17 C5 A B2008 -55.356 -74.045 3.596 1.00 0.01 C
ATOM 18 C6 A B2008 -55.084 -74.549 2.346 1.00 0.01 C
ATOM 19 N6 A B2008 -54.802 -75.819 2.134 1.00 0.01 N
ATOM 20 N1 A B2008 -55.121 -73.694 1.317 1.00 0.01 N
ATOM 21 C2 A B2008 -55.423 -72.425 1.544 1.00 0.01 C
ATOM 22 N3 A B2008 -55.710 -71.824 2.691 1.00 0.01 N
ATOM 23 C4 A B2008 -55.660 -72.711 3.689 1.00 0.01 C
ATOM 24 P U B2009 -59.428 -72.007 9.311 1.00 0.01 P
ATOM 25 OP1 U B2009 -60.527 -71.245 9.904 1.00 0.01 O
ATOM 26 OP2 U B2009 -58.468 -72.671 10.197 1.00 0.01 O
ATOM 27 O5' U B2009 -59.995 -73.042 8.291 1.00 0.01 O
TER
Atoms:
C4: (-56.820,-77.295,7.650)
N3: (-57.519,-77.878,6.628)
OP1: (-60.527,-71.245,9.904)
OP2: (-58.468,-72.671,10.197)
C2: (-58.515,-77.316,5.913)
C1': (-59.870,-75.385,5.521)
C3': (-61.886,-75.063,6.718)
O5': (-59.995,-73.042,8.291)
O4': (-59.914,-74.061,5.945)
C5': (-61.132,-72.751,7.521)
P: (-59.428,-72.007,9.311)
C4': (-61.243,-73.724,6.390)
C2': (-61.259,-75.990,5.704)
O2': (-61.953,-75.891,4.476)
N1: (-58.850,-76.056,6.289)
O4: (-55.941,-77.960,8.230)
O2: (-59.083,-77.923,5.035)
C6: (-58.198,-75.383,7.260)
C5: (-57.215,-75.945,7.940)
O3': (-63.289,-75.017,6.613)
N3: (-57.519,-77.878,6.628)
OP1: (-60.527,-71.245,9.904)
OP2: (-58.468,-72.671,10.197)
C2: (-58.515,-77.316,5.913)
C1': (-59.870,-75.385,5.521)
C3': (-61.886,-75.063,6.718)
O5': (-59.995,-73.042,8.291)
O4': (-59.914,-74.061,5.945)
C5': (-61.132,-72.751,7.521)
P: (-59.428,-72.007,9.311)
C4': (-61.243,-73.724,6.390)
C2': (-61.259,-75.990,5.704)
O2': (-61.953,-75.891,4.476)
N1: (-58.850,-76.056,6.289)
O4: (-55.941,-77.960,8.230)
O2: (-59.083,-77.923,5.035)
C6: (-58.198,-75.383,7.260)
C5: (-57.215,-75.945,7.940)
O3': (-63.289,-75.017,6.613)
OP1: (-53.457,-73.038,10.533)
OP2: (-53.458,-74.742,8.653)
C3': (-57.534,-71.520,7.577)
C1': (-56.238,-71.206,5.634)
C5': (-55.467,-71.540,9.038)
O4': (-55.412,-71.031,6.737)
C8: (-55.684,-73.665,5.637)
O2': (-58.210,-69.870,5.972)
C6: (-55.084,-74.549,2.346)
C5: (-55.356,-74.045,3.596)
C4: (-55.660,-72.711,3.689)
P: (-53.664,-73.342,9.125)
C4': (-56.197,-70.898,7.923)
C2': (-57.688,-71.181,6.118)
C2: (-55.423,-72.425,1.544)
N1: (-55.121,-73.694,1.317)
N3: (-55.710,-71.824,2.691)
N6: (-54.802,-75.819,2.134)
N7: (-55.373,-74.640,4.824)
N9: (-55.887,-72.479,5.011)
O5': (-55.066,-72.829,8.686)
O3': (-58.593,-71.022,8.377)
OP2: (-53.458,-74.742,8.653)
C3': (-57.534,-71.520,7.577)
C1': (-56.238,-71.206,5.634)
C5': (-55.467,-71.540,9.038)
O4': (-55.412,-71.031,6.737)
C8: (-55.684,-73.665,5.637)
O2': (-58.210,-69.870,5.972)
C6: (-55.084,-74.549,2.346)
C5: (-55.356,-74.045,3.596)
C4: (-55.660,-72.711,3.689)
P: (-53.664,-73.342,9.125)
C4': (-56.197,-70.898,7.923)
C2': (-57.688,-71.181,6.118)
C2: (-55.423,-72.425,1.544)
N1: (-55.121,-73.694,1.317)
N3: (-55.710,-71.824,2.691)
N6: (-54.802,-75.819,2.134)
N7: (-55.373,-74.640,4.824)
N9: (-55.887,-72.479,5.011)
O5': (-55.066,-72.829,8.686)
O3': (-58.593,-71.022,8.377)
Image (generated by PyMOL):