Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11229:11167
Extra
PDB:
ATOM 1 O3' C A1228 24.396 10.818 -27.689 1.00144.12 O
ATOM 2 P G A1229 25.547 11.176 -28.759 1.00139.44 P
ATOM 3 OP1 G A1229 25.724 12.651 -28.727 1.00139.19 O
ATOM 4 OP2 G A1229 25.181 10.527 -30.048 1.00139.77 O
ATOM 5 O5' G A1229 26.828 10.463 -28.132 1.00138.51 O
ATOM 6 C5' G A1229 27.111 10.571 -26.737 1.00138.28 C
ATOM 7 C4' G A1229 27.176 9.219 -26.064 1.00138.34 C
ATOM 8 O4' G A1229 25.987 8.458 -26.401 1.00139.31 O
ATOM 9 C3' G A1229 28.363 8.353 -26.458 1.00137.50 C
ATOM 10 O3' G A1229 28.801 7.604 -25.334 1.00137.22 O
ATOM 11 C2' G A1229 27.784 7.407 -27.506 1.00138.02 C
ATOM 12 O2' G A1229 28.453 6.166 -27.609 1.00137.60 O
ATOM 13 C1' G A1229 26.347 7.233 -27.019 1.00139.13 C
ATOM 14 N9 G A1229 25.387 6.985 -28.095 1.00139.89 N
ATOM 15 C8 G A1229 25.373 7.629 -29.302 1.00139.85 C
ATOM 16 N7 G A1229 24.397 7.250 -30.075 1.00140.63 N
ATOM 17 C5 G A1229 23.722 6.302 -29.328 1.00141.22 C
ATOM 18 C6 G A1229 22.577 5.539 -29.654 1.00142.16 C
ATOM 19 O6 G A1229 21.908 5.544 -30.693 1.00142.68 O
ATOM 20 N1 G A1229 22.223 4.697 -28.613 1.00142.50 N
ATOM 21 C2 G A1229 22.878 4.594 -27.412 1.00142.00 C
ATOM 22 N2 G A1229 22.367 3.718 -26.534 1.00142.47 N
ATOM 23 N3 G A1229 23.953 5.298 -27.096 1.00141.12 N
ATOM 24 C4 G A1229 24.316 6.127 -28.097 1.00140.78 C
ATOM 25 P A A1230 30.338 7.178 -25.241 1.00133.92 P
ATOM 26 OP1 A A1230 31.133 8.434 -25.224 1.00133.22 O
ATOM 27 OP2 A A1230 30.578 6.189 -26.331 1.00133.82 O
ATOM 28 O5' A A1230 30.441 6.455 -23.828 1.00133.90 O
TER
ATOM 1 O3' G B1166 20.130 1.322 -27.446 1.00156.71 O
ATOM 2 P A B1167 18.716 1.847 -26.880 1.00108.54 P
ATOM 3 OP1 A B1167 17.658 1.295 -27.773 1.00109.40 O
ATOM 4 OP2 A B1167 18.821 3.318 -26.719 1.00108.33 O
ATOM 5 O5' A B1167 18.630 1.157 -25.450 1.00108.66 O
ATOM 6 C5' A B1167 17.883 -0.034 -25.270 1.00109.34 C
ATOM 7 C4' A B1167 18.375 -0.805 -24.086 1.00109.03 C
ATOM 8 O4' A B1167 19.810 -0.977 -24.191 1.00107.93 O
ATOM 9 C3' A B1167 18.181 -0.122 -22.751 1.00109.12 C
ATOM 10 O3' A B1167 16.886 -0.298 -22.214 1.00110.13 O
ATOM 11 C2' A B1167 19.291 -0.709 -21.906 1.00108.31 C
ATOM 12 O2' A B1167 18.967 -2.022 -21.484 1.00108.68 O
ATOM 13 C1' A B1167 20.409 -0.792 -22.935 1.00107.46 C
ATOM 14 N9 A B1167 21.180 0.452 -22.983 1.00106.75 N
ATOM 15 C8 A B1167 21.395 1.270 -24.051 1.00106.52 C
ATOM 16 N7 A B1167 22.138 2.308 -23.765 1.00105.86 N
ATOM 17 C5 A B1167 22.426 2.158 -22.416 1.00105.65 C
ATOM 18 C6 A B1167 23.166 2.934 -21.494 1.00105.02 C
ATOM 19 N6 A B1167 23.803 4.072 -21.788 1.00104.43 N
ATOM 20 N1 A B1167 23.246 2.486 -20.221 1.00104.99 N
ATOM 21 C2 A B1167 22.613 1.348 -19.892 1.00105.58 C
ATOM 22 N3 A B1167 21.882 0.544 -20.660 1.00106.21 N
ATOM 23 C4 A B1167 21.828 1.015 -21.923 1.00106.21 C
ATOM 24 P C B1168 15.991 0.994 -21.933 1.00109.51 P
ATOM 25 OP1 C B1168 14.609 0.533 -21.645 1.00110.62 O
ATOM 26 OP2 C B1168 16.217 1.904 -23.075 1.00109.25 O
ATOM 27 O5' C B1168 16.659 1.590 -20.607 1.00108.94 O
TER
ATOM 2 P G A1229 25.547 11.176 -28.759 1.00139.44 P
ATOM 3 OP1 G A1229 25.724 12.651 -28.727 1.00139.19 O
ATOM 4 OP2 G A1229 25.181 10.527 -30.048 1.00139.77 O
ATOM 5 O5' G A1229 26.828 10.463 -28.132 1.00138.51 O
ATOM 6 C5' G A1229 27.111 10.571 -26.737 1.00138.28 C
ATOM 7 C4' G A1229 27.176 9.219 -26.064 1.00138.34 C
ATOM 8 O4' G A1229 25.987 8.458 -26.401 1.00139.31 O
ATOM 9 C3' G A1229 28.363 8.353 -26.458 1.00137.50 C
ATOM 10 O3' G A1229 28.801 7.604 -25.334 1.00137.22 O
ATOM 11 C2' G A1229 27.784 7.407 -27.506 1.00138.02 C
ATOM 12 O2' G A1229 28.453 6.166 -27.609 1.00137.60 O
ATOM 13 C1' G A1229 26.347 7.233 -27.019 1.00139.13 C
ATOM 14 N9 G A1229 25.387 6.985 -28.095 1.00139.89 N
ATOM 15 C8 G A1229 25.373 7.629 -29.302 1.00139.85 C
ATOM 16 N7 G A1229 24.397 7.250 -30.075 1.00140.63 N
ATOM 17 C5 G A1229 23.722 6.302 -29.328 1.00141.22 C
ATOM 18 C6 G A1229 22.577 5.539 -29.654 1.00142.16 C
ATOM 19 O6 G A1229 21.908 5.544 -30.693 1.00142.68 O
ATOM 20 N1 G A1229 22.223 4.697 -28.613 1.00142.50 N
ATOM 21 C2 G A1229 22.878 4.594 -27.412 1.00142.00 C
ATOM 22 N2 G A1229 22.367 3.718 -26.534 1.00142.47 N
ATOM 23 N3 G A1229 23.953 5.298 -27.096 1.00141.12 N
ATOM 24 C4 G A1229 24.316 6.127 -28.097 1.00140.78 C
ATOM 25 P A A1230 30.338 7.178 -25.241 1.00133.92 P
ATOM 26 OP1 A A1230 31.133 8.434 -25.224 1.00133.22 O
ATOM 27 OP2 A A1230 30.578 6.189 -26.331 1.00133.82 O
ATOM 28 O5' A A1230 30.441 6.455 -23.828 1.00133.90 O
TER
ATOM 1 O3' G B1166 20.130 1.322 -27.446 1.00156.71 O
ATOM 2 P A B1167 18.716 1.847 -26.880 1.00108.54 P
ATOM 3 OP1 A B1167 17.658 1.295 -27.773 1.00109.40 O
ATOM 4 OP2 A B1167 18.821 3.318 -26.719 1.00108.33 O
ATOM 5 O5' A B1167 18.630 1.157 -25.450 1.00108.66 O
ATOM 6 C5' A B1167 17.883 -0.034 -25.270 1.00109.34 C
ATOM 7 C4' A B1167 18.375 -0.805 -24.086 1.00109.03 C
ATOM 8 O4' A B1167 19.810 -0.977 -24.191 1.00107.93 O
ATOM 9 C3' A B1167 18.181 -0.122 -22.751 1.00109.12 C
ATOM 10 O3' A B1167 16.886 -0.298 -22.214 1.00110.13 O
ATOM 11 C2' A B1167 19.291 -0.709 -21.906 1.00108.31 C
ATOM 12 O2' A B1167 18.967 -2.022 -21.484 1.00108.68 O
ATOM 13 C1' A B1167 20.409 -0.792 -22.935 1.00107.46 C
ATOM 14 N9 A B1167 21.180 0.452 -22.983 1.00106.75 N
ATOM 15 C8 A B1167 21.395 1.270 -24.051 1.00106.52 C
ATOM 16 N7 A B1167 22.138 2.308 -23.765 1.00105.86 N
ATOM 17 C5 A B1167 22.426 2.158 -22.416 1.00105.65 C
ATOM 18 C6 A B1167 23.166 2.934 -21.494 1.00105.02 C
ATOM 19 N6 A B1167 23.803 4.072 -21.788 1.00104.43 N
ATOM 20 N1 A B1167 23.246 2.486 -20.221 1.00104.99 N
ATOM 21 C2 A B1167 22.613 1.348 -19.892 1.00105.58 C
ATOM 22 N3 A B1167 21.882 0.544 -20.660 1.00106.21 N
ATOM 23 C4 A B1167 21.828 1.015 -21.923 1.00106.21 C
ATOM 24 P C B1168 15.991 0.994 -21.933 1.00109.51 P
ATOM 25 OP1 C B1168 14.609 0.533 -21.645 1.00110.62 O
ATOM 26 OP2 C B1168 16.217 1.904 -23.075 1.00109.25 O
ATOM 27 O5' C B1168 16.659 1.590 -20.607 1.00108.94 O
TER
Atoms:
OP1: (25.724,12.651,-28.727)
OP2: (25.181,10.527,-30.048)
C3': (28.363,8.353,-26.458)
C1': (26.347,7.233,-27.019)
C5': (27.111,10.571,-26.737)
O6: (21.908,5.544,-30.693)
O4': (25.987,8.458,-26.401)
C8: (25.373,7.629,-29.302)
C2: (22.878,4.594,-27.412)
C6: (22.577,5.539,-29.654)
C5: (23.722,6.302,-29.328)
C4: (24.316,6.127,-28.097)
P: (25.547,11.176,-28.759)
C4': (27.176,9.219,-26.064)
C2': (27.784,7.407,-27.506)
O2': (28.453,6.166,-27.609)
N1: (22.223,4.697,-28.613)
N2: (22.367,3.718,-26.534)
N3: (23.953,5.298,-27.096)
N7: (24.397,7.250,-30.075)
N9: (25.387,6.985,-28.095)
O5': (26.828,10.463,-28.132)
O3': (28.801,7.604,-25.334)
OP2: (25.181,10.527,-30.048)
C3': (28.363,8.353,-26.458)
C1': (26.347,7.233,-27.019)
C5': (27.111,10.571,-26.737)
O6: (21.908,5.544,-30.693)
O4': (25.987,8.458,-26.401)
C8: (25.373,7.629,-29.302)
C2: (22.878,4.594,-27.412)
C6: (22.577,5.539,-29.654)
C5: (23.722,6.302,-29.328)
C4: (24.316,6.127,-28.097)
P: (25.547,11.176,-28.759)
C4': (27.176,9.219,-26.064)
C2': (27.784,7.407,-27.506)
O2': (28.453,6.166,-27.609)
N1: (22.223,4.697,-28.613)
N2: (22.367,3.718,-26.534)
N3: (23.953,5.298,-27.096)
N7: (24.397,7.250,-30.075)
N9: (25.387,6.985,-28.095)
O5': (26.828,10.463,-28.132)
O3': (28.801,7.604,-25.334)
OP1: (17.658,1.295,-27.773)
OP2: (18.821,3.318,-26.719)
C3': (18.181,-0.122,-22.751)
C1': (20.409,-0.792,-22.935)
C5': (17.883,-0.034,-25.270)
O4': (19.810,-0.977,-24.191)
C8: (21.395,1.270,-24.051)
O2': (18.967,-2.022,-21.484)
C6: (23.166,2.934,-21.494)
C5: (22.426,2.158,-22.416)
C4: (21.828,1.015,-21.923)
P: (18.716,1.847,-26.880)
C4': (18.375,-0.805,-24.086)
C2': (19.291,-0.709,-21.906)
C2: (22.613,1.348,-19.892)
N1: (23.246,2.486,-20.221)
N3: (21.882,0.544,-20.660)
N6: (23.803,4.072,-21.788)
N7: (22.138,2.308,-23.765)
N9: (21.180,0.452,-22.983)
O5': (18.630,1.157,-25.450)
O3': (16.886,-0.298,-22.214)
OP2: (18.821,3.318,-26.719)
C3': (18.181,-0.122,-22.751)
C1': (20.409,-0.792,-22.935)
C5': (17.883,-0.034,-25.270)
O4': (19.810,-0.977,-24.191)
C8: (21.395,1.270,-24.051)
O2': (18.967,-2.022,-21.484)
C6: (23.166,2.934,-21.494)
C5: (22.426,2.158,-22.416)
C4: (21.828,1.015,-21.923)
P: (18.716,1.847,-26.880)
C4': (18.375,-0.805,-24.086)
C2': (19.291,-0.709,-21.906)
C2: (22.613,1.348,-19.892)
N1: (23.246,2.486,-20.221)
N3: (21.882,0.544,-20.660)
N6: (23.803,4.072,-21.788)
N7: (22.138,2.308,-23.765)
N9: (21.180,0.452,-22.983)
O5': (18.630,1.157,-25.450)
O3': (16.886,-0.298,-22.214)
Image (generated by PyMOL):