ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJW:01084:01083

Extra

PDB:
ATOM 1 O3' A A1083 38.229 94.871 119.073 1.00 34.74 O
ATOM 2 P U A1084 39.610 95.656 118.917 1.00 35.61 P
ATOM 3 OP1 U A1084 40.632 95.034 119.796 1.00 35.58 O
ATOM 4 OP2 U A1084 39.288 97.094 119.069 1.00 35.86 O
ATOM 5 O5' U A1084 40.011 95.382 117.402 1.00 38.08 O
ATOM 6 C5' U A1084 40.184 94.029 116.923 1.00 40.12 C
ATOM 7 C4' U A1084 40.121 93.993 115.417 1.00 41.07 C
ATOM 8 O4' U A1084 38.832 94.475 114.970 1.00 40.91 O
ATOM 9 C3' U A1084 41.135 94.869 114.705 1.00 41.52 C
ATOM 10 O3' U A1084 42.339 94.127 114.550 1.00 42.90 O
ATOM 11 C2' U A1084 40.467 95.116 113.358 1.00 41.56 C
ATOM 12 O2' U A1084 40.648 94.033 112.468 1.00 43.49 O
ATOM 13 C1' U A1084 38.986 95.170 113.749 1.00 40.44 C
ATOM 14 N1 U A1084 38.397 96.507 113.901 1.00 38.96 N
ATOM 15 C2 U A1084 38.062 97.206 112.752 1.00 39.41 C
ATOM 16 O2 U A1084 38.272 96.781 111.622 1.00 40.48 O
ATOM 17 N3 U A1084 37.471 98.424 112.972 1.00 38.79 N
ATOM 18 C4 U A1084 37.195 99.003 114.192 1.00 39.56 C
ATOM 19 O4 U A1084 36.628 100.098 114.232 1.00 40.96 O
ATOM 20 C5 U A1084 37.591 98.226 115.322 1.00 39.40 C
ATOM 21 C6 U A1084 38.165 97.039 115.142 1.00 38.32 C
ATOM 22 P C A1085 43.721 94.704 115.118 1.00 45.43 P
ATOM 23 OP1 C A1085 44.755 93.713 114.714 1.00 43.69 O
ATOM 24 OP2 C A1085 43.565 95.051 116.549 1.00 45.49 O
ATOM 25 O5' C A1085 43.928 96.063 114.310 1.00 46.12 O
TER

ATOM 1 O3' A B1082 36.099 100.275 120.633 1.00 44.24 O
ATOM 2 P A B1083 35.022 99.488 119.734 1.00 46.29 P
ATOM 3 OP1 A B1083 35.475 99.645 118.328 1.00 47.65 O
ATOM 4 OP2 A B1083 33.638 99.884 120.104 1.00 48.75 O
ATOM 5 O5' A B1083 35.214 97.972 120.159 1.00 42.70 O
ATOM 6 C5' A B1083 36.411 97.286 119.827 1.00 37.47 C
ATOM 7 C4' A B1083 36.091 95.890 119.396 1.00 36.15 C
ATOM 8 O4' A B1083 34.823 95.861 118.697 1.00 35.41 O
ATOM 9 C3' A B1083 37.090 95.354 118.403 1.00 35.08 C
ATOM 10 O3' A B1083 38.229 94.871 119.073 1.00 34.74 O
ATOM 11 C2' A B1083 36.280 94.304 117.666 1.00 35.34 C
ATOM 12 O2' A B1083 36.147 93.128 118.429 1.00 36.82 O
ATOM 13 C1' A B1083 34.920 95.003 117.570 1.00 35.18 C
ATOM 14 N9 A B1083 34.747 95.829 116.370 1.00 33.53 N
ATOM 15 C8 A B1083 34.346 97.142 116.327 1.00 32.26 C
ATOM 16 N7 A B1083 34.247 97.628 115.116 1.00 30.42 N
ATOM 17 C5 A B1083 34.612 96.570 114.305 1.00 29.40 C
ATOM 18 C6 A B1083 34.707 96.450 112.920 1.00 28.98 C
ATOM 19 N6 A B1083 34.417 97.435 112.073 1.00 26.90 N
ATOM 20 N1 A B1083 35.112 95.267 112.423 1.00 29.76 N
ATOM 21 C2 A B1083 35.396 94.275 113.278 1.00 31.49 C
ATOM 22 N3 A B1083 35.338 94.263 114.605 1.00 31.16 N
ATOM 23 C4 A B1083 34.933 95.457 115.062 1.00 31.31 C
ATOM 24 P U B1084 39.610 95.656 118.917 1.00 35.61 P
ATOM 25 OP1 U B1084 40.632 95.034 119.796 1.00 35.58 O
ATOM 26 OP2 U B1084 39.288 97.094 119.069 1.00 35.86 O
ATOM 27 O5' U B1084 40.011 95.382 117.402 1.00 38.08 O
TER

Atoms:
C4: (37.195,99.003,114.192)
N3: (37.471,98.424,112.972)
OP1: (40.632,95.034,119.796)
OP2: (39.288,97.094,119.069)
C2: (38.062,97.206,112.752)
C1': (38.986,95.170,113.749)
C3': (41.135,94.869,114.705)
O5': (40.011,95.382,117.402)
O4': (38.832,94.475,114.970)
C5': (40.184,94.029,116.923)
P: (39.610,95.656,118.917)
C4': (40.121,93.993,115.417)
C2': (40.467,95.116,113.358)
O2': (40.648,94.033,112.468)
N1: (38.397,96.507,113.901)
O4: (36.628,100.098,114.232)
O2: (38.272,96.781,111.622)
C6: (38.165,97.039,115.142)
C5: (37.591,98.226,115.322)
O3': (42.339,94.127,114.550)
OP1: (35.475,99.645,118.328)
OP2: (33.638,99.884,120.104)
C3': (37.090,95.354,118.403)
C1': (34.920,95.003,117.570)
C5': (36.411,97.286,119.827)
O4': (34.823,95.861,118.697)
C8: (34.346,97.142,116.327)
O2': (36.147,93.128,118.429)
C6: (34.707,96.450,112.920)
C5: (34.612,96.570,114.305)
C4: (34.933,95.457,115.062)
P: (35.022,99.488,119.734)
C4': (36.091,95.890,119.396)
C2': (36.280,94.304,117.666)
C2: (35.396,94.275,113.278)
N1: (35.112,95.267,112.423)
N3: (35.338,94.263,114.605)
N6: (34.417,97.435,112.073)
N7: (34.247,97.628,115.116)
N9: (34.747,95.829,116.370)
O5': (35.214,97.972,120.159)
O3': (38.229,94.871,119.073)
Image (generated by PyMOL):
PyMOL image
show in jmol