Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DW5:A12:A15
Extra
PDB:
ATOM 1 O3' C A 11 -0.096 40.632 -4.115 1.00 9.01 O
ATOM 2 P G A 12 1.012 39.483 -4.235 1.00 9.66 P
ATOM 3 OP1 G A 12 1.197 38.940 -2.870 1.00 11.13 O
ATOM 4 OP2 G A 12 2.170 39.993 -5.005 1.00 10.10 O
ATOM 5 O5' G A 12 0.298 38.395 -5.163 1.00 9.69 O
ATOM 6 C5' G A 12 -0.760 37.595 -4.664 1.00 10.13 C
ATOM 7 C4' G A 12 -1.274 36.703 -5.776 1.00 9.16 C
ATOM 8 O4' G A 12 -1.848 37.527 -6.821 1.00 8.79 O
ATOM 9 C3' G A 12 -0.206 35.904 -6.503 1.00 9.03 C
ATOM 10 O3' G A 12 0.184 34.762 -5.733 1.00 9.96 O
ATOM 11 C2' G A 12 -0.961 35.569 -7.791 1.00 8.78 C
ATOM 12 O2' G A 12 -1.847 34.481 -7.635 1.00 9.24 O
ATOM 13 C1' G A 12 -1.703 36.885 -8.067 1.00 8.55 C
ATOM 14 N9 G A 12 -0.838 37.660 -8.937 1.00 8.21 N
ATOM 15 C8 G A 12 0.039 38.675 -8.642 1.00 9.02 C
ATOM 16 N7 G A 12 0.710 39.086 -9.687 1.00 9.36 N
ATOM 17 C5 G A 12 0.260 38.277 -10.725 1.00 8.71 C
ATOM 18 C6 G A 12 0.615 38.225 -12.092 1.00 8.81 C
ATOM 19 O6 G A 12 1.435 38.923 -12.698 1.00 10.69 O
ATOM 20 N1 G A 12 -0.094 37.234 -12.771 1.00 8.62 N
ATOM 21 C2 G A 12 -1.027 36.399 -12.207 1.00 7.76 C
ATOM 22 N2 G A 12 -1.613 35.496 -13.005 1.00 8.49 N
ATOM 23 N3 G A 12 -1.367 36.442 -10.932 1.00 7.99 N
ATOM 24 C4 G A 12 -0.681 37.392 -10.266 1.00 8.34 C
ATOM 25 P A A 13 1.741 34.445 -5.512 1.00 11.20 P
ATOM 26 OP1 A A 13 1.836 33.187 -4.740 1.00 13.11 O
ATOM 27 OP2 A A 13 2.435 35.656 -5.023 1.00 12.19 O
ATOM 28 O5' A A 13 2.194 34.169 -7.022 1.00 11.24 O
TER
ATOM 1 O3' G B 14 0.277 32.608 -15.642 1.00 8.97 O
ATOM 2 P A B 15 -0.874 33.416 -16.404 1.00 8.95 P
ATOM 3 OP1 A B 15 -0.549 33.352 -17.846 1.00 10.92 O
ATOM 4 OP2 A B 15 -1.063 34.731 -15.759 1.00 8.85 O
ATOM 5 O5' A B 15 -2.191 32.559 -16.114 1.00 8.65 O
ATOM 6 C5' A B 15 -2.406 31.290 -16.715 1.00 9.20 C
ATOM 7 C4' A B 15 -3.737 30.747 -16.234 1.00 8.75 C
ATOM 8 O4' A B 15 -3.659 30.435 -14.822 1.00 8.58 O
ATOM 9 C3' A B 15 -4.886 31.734 -16.329 1.00 8.62 C
ATOM 10 O3' A B 15 -5.405 31.697 -17.645 1.00 9.79 O
ATOM 11 C2' A B 15 -5.851 31.174 -15.289 1.00 8.32 C
ATOM 12 O2' A B 15 -6.581 30.075 -15.789 1.00 8.89 O
ATOM 13 C1' A B 15 -4.888 30.729 -14.190 1.00 7.55 C
ATOM 14 N9 A B 15 -4.682 31.806 -13.229 1.00 7.69 N
ATOM 15 C8 A B 15 -3.775 32.825 -13.336 1.00 7.35 C
ATOM 16 N7 A B 15 -3.825 33.679 -12.345 1.00 7.61 N
ATOM 17 C5 A B 15 -4.840 33.188 -11.544 1.00 7.97 C
ATOM 18 C6 A B 15 -5.374 33.652 -10.333 1.00 9.00 C
ATOM 19 N6 A B 15 -4.919 34.755 -9.730 1.00 10.64 N
ATOM 20 N1 A B 15 -6.381 32.947 -9.780 1.00 8.94 N
ATOM 21 C2 A B 15 -6.811 31.845 -10.407 1.00 8.76 C
ATOM 22 N3 A B 15 -6.386 31.307 -11.551 1.00 7.99 N
ATOM 23 C4 A B 15 -5.386 32.036 -12.071 1.00 7.58 C
ATOM 24 P G B 16 -5.892 33.049 -18.335 1.00 10.53 P
ATOM 25 OP1 G B 16 -6.377 32.692 -19.688 1.00 13.05 O
ATOM 26 OP2 G B 16 -4.860 34.103 -18.184 1.00 11.46 O
ATOM 27 O5' G B 16 -7.133 33.407 -17.400 1.00 10.64 O
TER
ATOM 2 P G A 12 1.012 39.483 -4.235 1.00 9.66 P
ATOM 3 OP1 G A 12 1.197 38.940 -2.870 1.00 11.13 O
ATOM 4 OP2 G A 12 2.170 39.993 -5.005 1.00 10.10 O
ATOM 5 O5' G A 12 0.298 38.395 -5.163 1.00 9.69 O
ATOM 6 C5' G A 12 -0.760 37.595 -4.664 1.00 10.13 C
ATOM 7 C4' G A 12 -1.274 36.703 -5.776 1.00 9.16 C
ATOM 8 O4' G A 12 -1.848 37.527 -6.821 1.00 8.79 O
ATOM 9 C3' G A 12 -0.206 35.904 -6.503 1.00 9.03 C
ATOM 10 O3' G A 12 0.184 34.762 -5.733 1.00 9.96 O
ATOM 11 C2' G A 12 -0.961 35.569 -7.791 1.00 8.78 C
ATOM 12 O2' G A 12 -1.847 34.481 -7.635 1.00 9.24 O
ATOM 13 C1' G A 12 -1.703 36.885 -8.067 1.00 8.55 C
ATOM 14 N9 G A 12 -0.838 37.660 -8.937 1.00 8.21 N
ATOM 15 C8 G A 12 0.039 38.675 -8.642 1.00 9.02 C
ATOM 16 N7 G A 12 0.710 39.086 -9.687 1.00 9.36 N
ATOM 17 C5 G A 12 0.260 38.277 -10.725 1.00 8.71 C
ATOM 18 C6 G A 12 0.615 38.225 -12.092 1.00 8.81 C
ATOM 19 O6 G A 12 1.435 38.923 -12.698 1.00 10.69 O
ATOM 20 N1 G A 12 -0.094 37.234 -12.771 1.00 8.62 N
ATOM 21 C2 G A 12 -1.027 36.399 -12.207 1.00 7.76 C
ATOM 22 N2 G A 12 -1.613 35.496 -13.005 1.00 8.49 N
ATOM 23 N3 G A 12 -1.367 36.442 -10.932 1.00 7.99 N
ATOM 24 C4 G A 12 -0.681 37.392 -10.266 1.00 8.34 C
ATOM 25 P A A 13 1.741 34.445 -5.512 1.00 11.20 P
ATOM 26 OP1 A A 13 1.836 33.187 -4.740 1.00 13.11 O
ATOM 27 OP2 A A 13 2.435 35.656 -5.023 1.00 12.19 O
ATOM 28 O5' A A 13 2.194 34.169 -7.022 1.00 11.24 O
TER
ATOM 1 O3' G B 14 0.277 32.608 -15.642 1.00 8.97 O
ATOM 2 P A B 15 -0.874 33.416 -16.404 1.00 8.95 P
ATOM 3 OP1 A B 15 -0.549 33.352 -17.846 1.00 10.92 O
ATOM 4 OP2 A B 15 -1.063 34.731 -15.759 1.00 8.85 O
ATOM 5 O5' A B 15 -2.191 32.559 -16.114 1.00 8.65 O
ATOM 6 C5' A B 15 -2.406 31.290 -16.715 1.00 9.20 C
ATOM 7 C4' A B 15 -3.737 30.747 -16.234 1.00 8.75 C
ATOM 8 O4' A B 15 -3.659 30.435 -14.822 1.00 8.58 O
ATOM 9 C3' A B 15 -4.886 31.734 -16.329 1.00 8.62 C
ATOM 10 O3' A B 15 -5.405 31.697 -17.645 1.00 9.79 O
ATOM 11 C2' A B 15 -5.851 31.174 -15.289 1.00 8.32 C
ATOM 12 O2' A B 15 -6.581 30.075 -15.789 1.00 8.89 O
ATOM 13 C1' A B 15 -4.888 30.729 -14.190 1.00 7.55 C
ATOM 14 N9 A B 15 -4.682 31.806 -13.229 1.00 7.69 N
ATOM 15 C8 A B 15 -3.775 32.825 -13.336 1.00 7.35 C
ATOM 16 N7 A B 15 -3.825 33.679 -12.345 1.00 7.61 N
ATOM 17 C5 A B 15 -4.840 33.188 -11.544 1.00 7.97 C
ATOM 18 C6 A B 15 -5.374 33.652 -10.333 1.00 9.00 C
ATOM 19 N6 A B 15 -4.919 34.755 -9.730 1.00 10.64 N
ATOM 20 N1 A B 15 -6.381 32.947 -9.780 1.00 8.94 N
ATOM 21 C2 A B 15 -6.811 31.845 -10.407 1.00 8.76 C
ATOM 22 N3 A B 15 -6.386 31.307 -11.551 1.00 7.99 N
ATOM 23 C4 A B 15 -5.386 32.036 -12.071 1.00 7.58 C
ATOM 24 P G B 16 -5.892 33.049 -18.335 1.00 10.53 P
ATOM 25 OP1 G B 16 -6.377 32.692 -19.688 1.00 13.05 O
ATOM 26 OP2 G B 16 -4.860 34.103 -18.184 1.00 11.46 O
ATOM 27 O5' G B 16 -7.133 33.407 -17.400 1.00 10.64 O
TER
Atoms:
OP1: (1.197,38.940,-2.870)
OP2: (2.170,39.993,-5.005)
C3': (-0.206,35.904,-6.503)
C1': (-1.703,36.885,-8.067)
C5': (-0.760,37.595,-4.664)
O6: (1.435,38.923,-12.698)
O4': (-1.848,37.527,-6.821)
C8: (0.039,38.675,-8.642)
C2: (-1.027,36.399,-12.207)
C6: (0.615,38.225,-12.092)
C5: (0.260,38.277,-10.725)
C4: (-0.681,37.392,-10.266)
P: (1.012,39.483,-4.235)
C4': (-1.274,36.703,-5.776)
C2': (-0.961,35.569,-7.791)
O2': (-1.847,34.481,-7.635)
N1: (-0.094,37.234,-12.771)
N2: (-1.613,35.496,-13.005)
N3: (-1.367,36.442,-10.932)
N7: (0.710,39.086,-9.687)
N9: (-0.838,37.660,-8.937)
O5': (0.298,38.395,-5.163)
O3': (0.184,34.762,-5.733)
OP2: (2.170,39.993,-5.005)
C3': (-0.206,35.904,-6.503)
C1': (-1.703,36.885,-8.067)
C5': (-0.760,37.595,-4.664)
O6: (1.435,38.923,-12.698)
O4': (-1.848,37.527,-6.821)
C8: (0.039,38.675,-8.642)
C2: (-1.027,36.399,-12.207)
C6: (0.615,38.225,-12.092)
C5: (0.260,38.277,-10.725)
C4: (-0.681,37.392,-10.266)
P: (1.012,39.483,-4.235)
C4': (-1.274,36.703,-5.776)
C2': (-0.961,35.569,-7.791)
O2': (-1.847,34.481,-7.635)
N1: (-0.094,37.234,-12.771)
N2: (-1.613,35.496,-13.005)
N3: (-1.367,36.442,-10.932)
N7: (0.710,39.086,-9.687)
N9: (-0.838,37.660,-8.937)
O5': (0.298,38.395,-5.163)
O3': (0.184,34.762,-5.733)
OP1: (-0.549,33.352,-17.846)
OP2: (-1.063,34.731,-15.759)
C3': (-4.886,31.734,-16.329)
C1': (-4.888,30.729,-14.190)
C5': (-2.406,31.290,-16.715)
O4': (-3.659,30.435,-14.822)
C8: (-3.775,32.825,-13.336)
O2': (-6.581,30.075,-15.789)
C6: (-5.374,33.652,-10.333)
C5: (-4.840,33.188,-11.544)
C4: (-5.386,32.036,-12.071)
P: (-0.874,33.416,-16.404)
C4': (-3.737,30.747,-16.234)
C2': (-5.851,31.174,-15.289)
C2: (-6.811,31.845,-10.407)
N1: (-6.381,32.947,-9.780)
N3: (-6.386,31.307,-11.551)
N6: (-4.919,34.755,-9.730)
N7: (-3.825,33.679,-12.345)
N9: (-4.682,31.806,-13.229)
O5': (-2.191,32.559,-16.114)
O3': (-5.405,31.697,-17.645)
OP2: (-1.063,34.731,-15.759)
C3': (-4.886,31.734,-16.329)
C1': (-4.888,30.729,-14.190)
C5': (-2.406,31.290,-16.715)
O4': (-3.659,30.435,-14.822)
C8: (-3.775,32.825,-13.336)
O2': (-6.581,30.075,-15.789)
C6: (-5.374,33.652,-10.333)
C5: (-4.840,33.188,-11.544)
C4: (-5.386,32.036,-12.071)
P: (-0.874,33.416,-16.404)
C4': (-3.737,30.747,-16.234)
C2': (-5.851,31.174,-15.289)
C2: (-6.811,31.845,-10.407)
N1: (-6.381,32.947,-9.780)
N3: (-6.386,31.307,-11.551)
N6: (-4.919,34.755,-9.730)
N7: (-3.825,33.679,-12.345)
N9: (-4.682,31.806,-13.229)
O5': (-2.191,32.559,-16.114)
O3': (-5.405,31.697,-17.645)
Image (generated by PyMOL):