Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A77:A7
Extra
PDB:
ATOM 1 O3' U A 76 5.688 -21.711 12.879 1.00 38.73 O
ATOM 2 P G A 77 5.496 -23.204 13.438 1.00 44.34 P
ATOM 3 OP1 G A 77 6.852 -23.773 13.636 1.00 53.47 O
ATOM 4 OP2 G A 77 4.556 -23.898 12.522 1.00 40.97 O
ATOM 5 O5' G A 77 4.797 -22.966 14.846 1.00 36.77 O
ATOM 6 C5' G A 77 5.382 -22.108 15.813 1.00 38.23 C
ATOM 7 C4' G A 77 4.513 -21.990 17.039 1.00 39.38 C
ATOM 8 O4' G A 77 3.358 -21.161 16.747 1.00 36.59 O
ATOM 9 C3' G A 77 3.922 -23.291 17.559 1.00 36.77 C
ATOM 10 O3' G A 77 4.839 -24.032 18.349 1.00 38.85 O
ATOM 11 C2' G A 77 2.690 -22.812 18.319 1.00 34.60 C
ATOM 12 O2' G A 77 3.055 -22.297 19.590 1.00 35.96 O
ATOM 13 C1' G A 77 2.228 -21.646 17.439 1.00 36.19 C
ATOM 14 N9 G A 77 1.222 -22.070 16.445 1.00 35.16 N
ATOM 15 C8 G A 77 1.476 -22.527 15.175 1.00 35.38 C
ATOM 16 N7 G A 77 0.395 -22.843 14.514 1.00 31.94 N
ATOM 17 C5 G A 77 -0.639 -22.581 15.401 1.00 32.95 C
ATOM 18 C6 G A 77 -2.044 -22.733 15.253 1.00 36.51 C
ATOM 19 O6 G A 77 -2.684 -23.139 14.278 1.00 39.18 O
ATOM 20 N1 G A 77 -2.732 -22.355 16.399 1.00 33.30 N
ATOM 21 C2 G A 77 -2.139 -21.886 17.543 1.00 34.86 C
ATOM 22 N2 G A 77 -2.965 -21.565 18.550 1.00 30.80 N
ATOM 23 N3 G A 77 -0.833 -21.740 17.695 1.00 34.06 N
ATOM 24 C4 G A 77 -0.146 -22.102 16.595 1.00 32.38 C
ATOM 25 P C A 78 4.358 -25.326 19.171 1.00 38.50 P
ATOM 26 OP1 C A 78 5.562 -25.902 19.821 1.00 42.00 O
ATOM 27 OP2 C A 78 3.575 -26.174 18.244 1.00 28.86 O
ATOM 28 O5' C A 78 3.397 -24.696 20.272 1.00 43.19 O
TER
ATOM 1 O3' U B 6 -6.825 -23.178 21.162 1.00 27.68 O
ATOM 2 P A B 7 -6.861 -21.664 20.617 1.00 26.03 P
ATOM 3 OP1 A B 7 -8.287 -21.294 20.460 1.00 27.72 O
ATOM 4 OP2 A B 7 -5.973 -21.600 19.429 1.00 27.27 O
ATOM 5 O5' A B 7 -6.213 -20.837 21.812 1.00 25.45 O
ATOM 6 C5' A B 7 -6.829 -20.796 23.090 1.00 26.81 C
ATOM 7 C4' A B 7 -6.086 -19.879 24.026 1.00 28.01 C
ATOM 8 O4' A B 7 -4.742 -20.382 24.243 1.00 28.11 O
ATOM 9 C3' A B 7 -5.873 -18.459 23.532 1.00 24.40 C
ATOM 10 O3' A B 7 -7.013 -17.638 23.719 1.00 27.56 O
ATOM 11 C2' A B 7 -4.654 -18.007 24.325 1.00 26.90 C
ATOM 12 O2' A B 7 -5.024 -17.617 25.639 1.00 27.72 O
ATOM 13 C1' A B 7 -3.848 -19.305 24.416 1.00 27.95 C
ATOM 14 N9 A B 7 -2.808 -19.389 23.375 1.00 26.93 N
ATOM 15 C8 A B 7 -2.908 -19.981 22.142 1.00 29.06 C
ATOM 16 N7 A B 7 -1.812 -19.897 21.429 1.00 30.80 N
ATOM 17 C5 A B 7 -0.930 -19.210 22.250 1.00 26.04 C
ATOM 18 C6 A B 7 0.400 -18.802 22.068 1.00 28.55 C
ATOM 19 N6 A B 7 1.097 -19.046 20.953 1.00 28.95 N
ATOM 20 N1 A B 7 0.994 -18.129 23.080 1.00 30.08 N
ATOM 21 C2 A B 7 0.287 -17.892 24.194 1.00 29.06 C
ATOM 22 N3 A B 7 -0.970 -18.226 24.478 1.00 27.07 N
ATOM 23 C4 A B 7 -1.528 -18.891 23.453 1.00 25.27 C
ATOM 24 P G B 8 -7.347 -16.469 22.670 1.00 26.97 P
ATOM 25 OP1 G B 8 -8.644 -15.876 23.072 1.00 41.98 O
ATOM 26 OP2 G B 8 -7.220 -17.046 21.317 1.00 24.37 O
ATOM 27 O5' G B 8 -6.175 -15.427 22.925 1.00 25.38 O
TER
ATOM 2 P G A 77 5.496 -23.204 13.438 1.00 44.34 P
ATOM 3 OP1 G A 77 6.852 -23.773 13.636 1.00 53.47 O
ATOM 4 OP2 G A 77 4.556 -23.898 12.522 1.00 40.97 O
ATOM 5 O5' G A 77 4.797 -22.966 14.846 1.00 36.77 O
ATOM 6 C5' G A 77 5.382 -22.108 15.813 1.00 38.23 C
ATOM 7 C4' G A 77 4.513 -21.990 17.039 1.00 39.38 C
ATOM 8 O4' G A 77 3.358 -21.161 16.747 1.00 36.59 O
ATOM 9 C3' G A 77 3.922 -23.291 17.559 1.00 36.77 C
ATOM 10 O3' G A 77 4.839 -24.032 18.349 1.00 38.85 O
ATOM 11 C2' G A 77 2.690 -22.812 18.319 1.00 34.60 C
ATOM 12 O2' G A 77 3.055 -22.297 19.590 1.00 35.96 O
ATOM 13 C1' G A 77 2.228 -21.646 17.439 1.00 36.19 C
ATOM 14 N9 G A 77 1.222 -22.070 16.445 1.00 35.16 N
ATOM 15 C8 G A 77 1.476 -22.527 15.175 1.00 35.38 C
ATOM 16 N7 G A 77 0.395 -22.843 14.514 1.00 31.94 N
ATOM 17 C5 G A 77 -0.639 -22.581 15.401 1.00 32.95 C
ATOM 18 C6 G A 77 -2.044 -22.733 15.253 1.00 36.51 C
ATOM 19 O6 G A 77 -2.684 -23.139 14.278 1.00 39.18 O
ATOM 20 N1 G A 77 -2.732 -22.355 16.399 1.00 33.30 N
ATOM 21 C2 G A 77 -2.139 -21.886 17.543 1.00 34.86 C
ATOM 22 N2 G A 77 -2.965 -21.565 18.550 1.00 30.80 N
ATOM 23 N3 G A 77 -0.833 -21.740 17.695 1.00 34.06 N
ATOM 24 C4 G A 77 -0.146 -22.102 16.595 1.00 32.38 C
ATOM 25 P C A 78 4.358 -25.326 19.171 1.00 38.50 P
ATOM 26 OP1 C A 78 5.562 -25.902 19.821 1.00 42.00 O
ATOM 27 OP2 C A 78 3.575 -26.174 18.244 1.00 28.86 O
ATOM 28 O5' C A 78 3.397 -24.696 20.272 1.00 43.19 O
TER
ATOM 1 O3' U B 6 -6.825 -23.178 21.162 1.00 27.68 O
ATOM 2 P A B 7 -6.861 -21.664 20.617 1.00 26.03 P
ATOM 3 OP1 A B 7 -8.287 -21.294 20.460 1.00 27.72 O
ATOM 4 OP2 A B 7 -5.973 -21.600 19.429 1.00 27.27 O
ATOM 5 O5' A B 7 -6.213 -20.837 21.812 1.00 25.45 O
ATOM 6 C5' A B 7 -6.829 -20.796 23.090 1.00 26.81 C
ATOM 7 C4' A B 7 -6.086 -19.879 24.026 1.00 28.01 C
ATOM 8 O4' A B 7 -4.742 -20.382 24.243 1.00 28.11 O
ATOM 9 C3' A B 7 -5.873 -18.459 23.532 1.00 24.40 C
ATOM 10 O3' A B 7 -7.013 -17.638 23.719 1.00 27.56 O
ATOM 11 C2' A B 7 -4.654 -18.007 24.325 1.00 26.90 C
ATOM 12 O2' A B 7 -5.024 -17.617 25.639 1.00 27.72 O
ATOM 13 C1' A B 7 -3.848 -19.305 24.416 1.00 27.95 C
ATOM 14 N9 A B 7 -2.808 -19.389 23.375 1.00 26.93 N
ATOM 15 C8 A B 7 -2.908 -19.981 22.142 1.00 29.06 C
ATOM 16 N7 A B 7 -1.812 -19.897 21.429 1.00 30.80 N
ATOM 17 C5 A B 7 -0.930 -19.210 22.250 1.00 26.04 C
ATOM 18 C6 A B 7 0.400 -18.802 22.068 1.00 28.55 C
ATOM 19 N6 A B 7 1.097 -19.046 20.953 1.00 28.95 N
ATOM 20 N1 A B 7 0.994 -18.129 23.080 1.00 30.08 N
ATOM 21 C2 A B 7 0.287 -17.892 24.194 1.00 29.06 C
ATOM 22 N3 A B 7 -0.970 -18.226 24.478 1.00 27.07 N
ATOM 23 C4 A B 7 -1.528 -18.891 23.453 1.00 25.27 C
ATOM 24 P G B 8 -7.347 -16.469 22.670 1.00 26.97 P
ATOM 25 OP1 G B 8 -8.644 -15.876 23.072 1.00 41.98 O
ATOM 26 OP2 G B 8 -7.220 -17.046 21.317 1.00 24.37 O
ATOM 27 O5' G B 8 -6.175 -15.427 22.925 1.00 25.38 O
TER
Atoms:
OP1: (6.852,-23.773,13.636)
OP2: (4.556,-23.898,12.522)
C3': (3.922,-23.291,17.559)
C1': (2.228,-21.646,17.439)
C5': (5.382,-22.108,15.813)
O6: (-2.684,-23.139,14.278)
O4': (3.358,-21.161,16.747)
C8: (1.476,-22.527,15.175)
C2: (-2.139,-21.886,17.543)
C6: (-2.044,-22.733,15.253)
C5: (-0.639,-22.581,15.401)
C4: (-0.146,-22.102,16.595)
P: (5.496,-23.204,13.438)
C4': (4.513,-21.990,17.039)
C2': (2.690,-22.812,18.319)
O2': (3.055,-22.297,19.590)
N1: (-2.732,-22.355,16.399)
N2: (-2.965,-21.565,18.550)
N3: (-0.833,-21.740,17.695)
N7: (0.395,-22.843,14.514)
N9: (1.222,-22.070,16.445)
O5': (4.797,-22.966,14.846)
O3': (4.839,-24.032,18.349)
OP2: (4.556,-23.898,12.522)
C3': (3.922,-23.291,17.559)
C1': (2.228,-21.646,17.439)
C5': (5.382,-22.108,15.813)
O6: (-2.684,-23.139,14.278)
O4': (3.358,-21.161,16.747)
C8: (1.476,-22.527,15.175)
C2: (-2.139,-21.886,17.543)
C6: (-2.044,-22.733,15.253)
C5: (-0.639,-22.581,15.401)
C4: (-0.146,-22.102,16.595)
P: (5.496,-23.204,13.438)
C4': (4.513,-21.990,17.039)
C2': (2.690,-22.812,18.319)
O2': (3.055,-22.297,19.590)
N1: (-2.732,-22.355,16.399)
N2: (-2.965,-21.565,18.550)
N3: (-0.833,-21.740,17.695)
N7: (0.395,-22.843,14.514)
N9: (1.222,-22.070,16.445)
O5': (4.797,-22.966,14.846)
O3': (4.839,-24.032,18.349)
OP1: (-8.287,-21.294,20.460)
OP2: (-5.973,-21.600,19.429)
C3': (-5.873,-18.459,23.532)
C1': (-3.848,-19.305,24.416)
C5': (-6.829,-20.796,23.090)
O4': (-4.742,-20.382,24.243)
C8: (-2.908,-19.981,22.142)
O2': (-5.024,-17.617,25.639)
C6: (0.400,-18.802,22.068)
C5: (-0.930,-19.210,22.250)
C4: (-1.528,-18.891,23.453)
P: (-6.861,-21.664,20.617)
C4': (-6.086,-19.879,24.026)
C2': (-4.654,-18.007,24.325)
C2: (0.287,-17.892,24.194)
N1: (0.994,-18.129,23.080)
N3: (-0.970,-18.226,24.478)
N6: (1.097,-19.046,20.953)
N7: (-1.812,-19.897,21.429)
N9: (-2.808,-19.389,23.375)
O5': (-6.213,-20.837,21.812)
O3': (-7.013,-17.638,23.719)
OP2: (-5.973,-21.600,19.429)
C3': (-5.873,-18.459,23.532)
C1': (-3.848,-19.305,24.416)
C5': (-6.829,-20.796,23.090)
O4': (-4.742,-20.382,24.243)
C8: (-2.908,-19.981,22.142)
O2': (-5.024,-17.617,25.639)
C6: (0.400,-18.802,22.068)
C5: (-0.930,-19.210,22.250)
C4: (-1.528,-18.891,23.453)
P: (-6.861,-21.664,20.617)
C4': (-6.086,-19.879,24.026)
C2': (-4.654,-18.007,24.325)
C2: (0.287,-17.892,24.194)
N1: (0.994,-18.129,23.080)
N3: (-0.970,-18.226,24.478)
N6: (1.097,-19.046,20.953)
N7: (-1.812,-19.897,21.429)
N9: (-2.808,-19.389,23.375)
O5': (-6.213,-20.837,21.812)
O3': (-7.013,-17.638,23.719)
Image (generated by PyMOL):