Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:054:060
Extra
PDB:
ATOM 1 O3' U A 53 51.100 148.922 37.851 1.00 51.98 O
ATOM 2 P G A 54 52.483 148.950 37.041 1.00 54.25 P
ATOM 3 OP1 G A 54 52.626 147.654 36.343 1.00 54.62 O
ATOM 4 OP2 G A 54 53.546 149.398 37.979 1.00 53.66 O
ATOM 5 O5' G A 54 52.250 150.076 35.937 1.00 53.12 O
ATOM 6 C5' G A 54 51.113 150.012 35.063 1.00 51.30 C
ATOM 7 C4' G A 54 50.895 151.337 34.378 1.00 51.37 C
ATOM 8 O4' G A 54 50.590 152.371 35.347 1.00 52.80 O
ATOM 9 C3' G A 54 52.091 151.894 33.644 1.00 51.21 C
ATOM 10 O3' G A 54 52.252 151.284 32.389 1.00 51.61 O
ATOM 11 C2' G A 54 51.743 153.368 33.522 1.00 52.18 C
ATOM 12 O2' G A 54 50.825 153.635 32.482 1.00 52.31 O
ATOM 13 C1' G A 54 51.076 153.621 34.872 1.00 52.72 C
ATOM 14 N9 G A 54 51.984 154.181 35.869 1.00 53.18 N
ATOM 15 C8 G A 54 52.485 153.548 36.978 1.00 53.98 C
ATOM 16 N7 G A 54 53.231 154.321 37.715 1.00 55.07 N
ATOM 17 C5 G A 54 53.232 155.536 37.048 1.00 54.73 C
ATOM 18 C6 G A 54 53.855 156.761 37.382 1.00 55.82 C
ATOM 19 O6 G A 54 54.550 157.026 38.372 1.00 57.10 O
ATOM 20 N1 G A 54 53.601 157.739 36.427 1.00 54.69 N
ATOM 21 C2 G A 54 52.848 157.561 35.299 1.00 53.58 C
ATOM 22 N2 G A 54 52.736 158.620 34.496 1.00 51.91 N
ATOM 23 N3 G A 54 52.251 156.426 34.981 1.00 54.13 N
ATOM 24 C4 G A 54 52.482 155.462 35.897 1.00 53.75 C
ATOM 25 P C A 55 53.726 150.978 31.865 1.00 51.88 P
ATOM 26 OP1 C A 55 53.610 150.169 30.633 1.00 53.96 O
ATOM 27 OP2 C A 55 54.471 150.437 33.030 1.00 52.88 O
ATOM 28 O5' C A 55 54.302 152.418 31.491 1.00 53.60 O
TER
ATOM 1 O3' A B 59 53.594 161.310 31.251 1.00 49.76 O
ATOM 2 P A B 60 52.561 161.512 32.486 1.00 48.00 P
ATOM 3 OP1 A B 60 51.852 162.803 32.328 1.00 48.64 O
ATOM 4 OP2 A B 60 53.243 161.218 33.755 1.00 48.54 O
ATOM 5 O5' A B 60 51.494 160.349 32.278 1.00 49.83 O
ATOM 6 C5' A B 60 50.093 160.577 32.507 1.00 52.25 C
ATOM 7 C4' A B 60 49.332 159.273 32.457 1.00 54.08 C
ATOM 8 O4' A B 60 49.860 158.365 33.456 1.00 53.75 O
ATOM 9 C3' A B 60 47.847 159.397 32.756 1.00 57.22 C
ATOM 10 O3' A B 60 47.140 158.388 32.061 1.00 60.87 O
ATOM 11 C2' A B 60 47.780 159.125 34.249 1.00 57.20 C
ATOM 12 O2' A B 60 46.516 158.623 34.637 1.00 60.57 O
ATOM 13 C1' A B 60 48.863 158.064 34.410 1.00 55.25 C
ATOM 14 N9 A B 60 49.499 158.082 35.723 1.00 55.61 N
ATOM 15 C8 A B 60 49.594 157.051 36.617 1.00 56.98 C
ATOM 16 N7 A B 60 50.278 157.347 37.695 1.00 58.44 N
ATOM 17 C5 A B 60 50.649 158.670 37.503 1.00 58.17 C
ATOM 18 C6 A B 60 51.399 159.567 38.284 1.00 57.81 C
ATOM 19 N6 A B 60 51.948 159.250 39.460 1.00 57.81 N
ATOM 20 N1 A B 60 51.572 160.819 37.808 1.00 57.22 N
ATOM 21 C2 A B 60 51.031 161.134 36.629 1.00 57.00 C
ATOM 22 N3 A B 60 50.313 160.380 35.802 1.00 57.67 N
ATOM 23 C4 A B 60 50.159 159.142 36.302 1.00 57.35 C
ATOM 24 P G B 61 46.650 158.659 30.560 1.00 64.19 P
ATOM 25 OP1 G B 61 46.149 160.065 30.472 1.00 63.24 O
ATOM 26 OP2 G B 61 45.758 157.527 30.173 1.00 64.36 O
ATOM 27 O5' G B 61 47.999 158.556 29.724 1.00 60.75 O
TER
ATOM 2 P G A 54 52.483 148.950 37.041 1.00 54.25 P
ATOM 3 OP1 G A 54 52.626 147.654 36.343 1.00 54.62 O
ATOM 4 OP2 G A 54 53.546 149.398 37.979 1.00 53.66 O
ATOM 5 O5' G A 54 52.250 150.076 35.937 1.00 53.12 O
ATOM 6 C5' G A 54 51.113 150.012 35.063 1.00 51.30 C
ATOM 7 C4' G A 54 50.895 151.337 34.378 1.00 51.37 C
ATOM 8 O4' G A 54 50.590 152.371 35.347 1.00 52.80 O
ATOM 9 C3' G A 54 52.091 151.894 33.644 1.00 51.21 C
ATOM 10 O3' G A 54 52.252 151.284 32.389 1.00 51.61 O
ATOM 11 C2' G A 54 51.743 153.368 33.522 1.00 52.18 C
ATOM 12 O2' G A 54 50.825 153.635 32.482 1.00 52.31 O
ATOM 13 C1' G A 54 51.076 153.621 34.872 1.00 52.72 C
ATOM 14 N9 G A 54 51.984 154.181 35.869 1.00 53.18 N
ATOM 15 C8 G A 54 52.485 153.548 36.978 1.00 53.98 C
ATOM 16 N7 G A 54 53.231 154.321 37.715 1.00 55.07 N
ATOM 17 C5 G A 54 53.232 155.536 37.048 1.00 54.73 C
ATOM 18 C6 G A 54 53.855 156.761 37.382 1.00 55.82 C
ATOM 19 O6 G A 54 54.550 157.026 38.372 1.00 57.10 O
ATOM 20 N1 G A 54 53.601 157.739 36.427 1.00 54.69 N
ATOM 21 C2 G A 54 52.848 157.561 35.299 1.00 53.58 C
ATOM 22 N2 G A 54 52.736 158.620 34.496 1.00 51.91 N
ATOM 23 N3 G A 54 52.251 156.426 34.981 1.00 54.13 N
ATOM 24 C4 G A 54 52.482 155.462 35.897 1.00 53.75 C
ATOM 25 P C A 55 53.726 150.978 31.865 1.00 51.88 P
ATOM 26 OP1 C A 55 53.610 150.169 30.633 1.00 53.96 O
ATOM 27 OP2 C A 55 54.471 150.437 33.030 1.00 52.88 O
ATOM 28 O5' C A 55 54.302 152.418 31.491 1.00 53.60 O
TER
ATOM 1 O3' A B 59 53.594 161.310 31.251 1.00 49.76 O
ATOM 2 P A B 60 52.561 161.512 32.486 1.00 48.00 P
ATOM 3 OP1 A B 60 51.852 162.803 32.328 1.00 48.64 O
ATOM 4 OP2 A B 60 53.243 161.218 33.755 1.00 48.54 O
ATOM 5 O5' A B 60 51.494 160.349 32.278 1.00 49.83 O
ATOM 6 C5' A B 60 50.093 160.577 32.507 1.00 52.25 C
ATOM 7 C4' A B 60 49.332 159.273 32.457 1.00 54.08 C
ATOM 8 O4' A B 60 49.860 158.365 33.456 1.00 53.75 O
ATOM 9 C3' A B 60 47.847 159.397 32.756 1.00 57.22 C
ATOM 10 O3' A B 60 47.140 158.388 32.061 1.00 60.87 O
ATOM 11 C2' A B 60 47.780 159.125 34.249 1.00 57.20 C
ATOM 12 O2' A B 60 46.516 158.623 34.637 1.00 60.57 O
ATOM 13 C1' A B 60 48.863 158.064 34.410 1.00 55.25 C
ATOM 14 N9 A B 60 49.499 158.082 35.723 1.00 55.61 N
ATOM 15 C8 A B 60 49.594 157.051 36.617 1.00 56.98 C
ATOM 16 N7 A B 60 50.278 157.347 37.695 1.00 58.44 N
ATOM 17 C5 A B 60 50.649 158.670 37.503 1.00 58.17 C
ATOM 18 C6 A B 60 51.399 159.567 38.284 1.00 57.81 C
ATOM 19 N6 A B 60 51.948 159.250 39.460 1.00 57.81 N
ATOM 20 N1 A B 60 51.572 160.819 37.808 1.00 57.22 N
ATOM 21 C2 A B 60 51.031 161.134 36.629 1.00 57.00 C
ATOM 22 N3 A B 60 50.313 160.380 35.802 1.00 57.67 N
ATOM 23 C4 A B 60 50.159 159.142 36.302 1.00 57.35 C
ATOM 24 P G B 61 46.650 158.659 30.560 1.00 64.19 P
ATOM 25 OP1 G B 61 46.149 160.065 30.472 1.00 63.24 O
ATOM 26 OP2 G B 61 45.758 157.527 30.173 1.00 64.36 O
ATOM 27 O5' G B 61 47.999 158.556 29.724 1.00 60.75 O
TER
Atoms:
OP1: (52.626,147.654,36.343)
OP2: (53.546,149.398,37.979)
C3': (52.091,151.894,33.644)
C1': (51.076,153.621,34.872)
C5': (51.113,150.012,35.063)
O6: (54.550,157.026,38.372)
O4': (50.590,152.371,35.347)
C8: (52.485,153.548,36.978)
C2: (52.848,157.561,35.299)
C6: (53.855,156.761,37.382)
C5: (53.232,155.536,37.048)
C4: (52.482,155.462,35.897)
P: (52.483,148.950,37.041)
C4': (50.895,151.337,34.378)
C2': (51.743,153.368,33.522)
O2': (50.825,153.635,32.482)
N1: (53.601,157.739,36.427)
N2: (52.736,158.620,34.496)
N3: (52.251,156.426,34.981)
N7: (53.231,154.321,37.715)
N9: (51.984,154.181,35.869)
O5': (52.250,150.076,35.937)
O3': (52.252,151.284,32.389)
OP2: (53.546,149.398,37.979)
C3': (52.091,151.894,33.644)
C1': (51.076,153.621,34.872)
C5': (51.113,150.012,35.063)
O6: (54.550,157.026,38.372)
O4': (50.590,152.371,35.347)
C8: (52.485,153.548,36.978)
C2: (52.848,157.561,35.299)
C6: (53.855,156.761,37.382)
C5: (53.232,155.536,37.048)
C4: (52.482,155.462,35.897)
P: (52.483,148.950,37.041)
C4': (50.895,151.337,34.378)
C2': (51.743,153.368,33.522)
O2': (50.825,153.635,32.482)
N1: (53.601,157.739,36.427)
N2: (52.736,158.620,34.496)
N3: (52.251,156.426,34.981)
N7: (53.231,154.321,37.715)
N9: (51.984,154.181,35.869)
O5': (52.250,150.076,35.937)
O3': (52.252,151.284,32.389)
OP1: (51.852,162.803,32.328)
OP2: (53.243,161.218,33.755)
C3': (47.847,159.397,32.756)
C1': (48.863,158.064,34.410)
C5': (50.093,160.577,32.507)
O4': (49.860,158.365,33.456)
C8: (49.594,157.051,36.617)
O2': (46.516,158.623,34.637)
C6: (51.399,159.567,38.284)
C5: (50.649,158.670,37.503)
C4: (50.159,159.142,36.302)
P: (52.561,161.512,32.486)
C4': (49.332,159.273,32.457)
C2': (47.780,159.125,34.249)
C2: (51.031,161.134,36.629)
N1: (51.572,160.819,37.808)
N3: (50.313,160.380,35.802)
N6: (51.948,159.250,39.460)
N7: (50.278,157.347,37.695)
N9: (49.499,158.082,35.723)
O5': (51.494,160.349,32.278)
O3': (47.140,158.388,32.061)
OP2: (53.243,161.218,33.755)
C3': (47.847,159.397,32.756)
C1': (48.863,158.064,34.410)
C5': (50.093,160.577,32.507)
O4': (49.860,158.365,33.456)
C8: (49.594,157.051,36.617)
O2': (46.516,158.623,34.637)
C6: (51.399,159.567,38.284)
C5: (50.649,158.670,37.503)
C4: (50.159,159.142,36.302)
P: (52.561,161.512,32.486)
C4': (49.332,159.273,32.457)
C2': (47.780,159.125,34.249)
C2: (51.031,161.134,36.629)
N1: (51.572,160.819,37.808)
N3: (50.313,160.380,35.802)
N6: (51.948,159.250,39.460)
N7: (50.278,157.347,37.695)
N9: (49.499,158.082,35.723)
O5': (51.494,160.349,32.278)
O3': (47.140,158.388,32.061)
Image (generated by PyMOL):