Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0576:0557
Extra
PDB:
ATOM 1 O3' A A 575 -9.038 87.409 110.370 1.00 74.52 O
ATOM 2 P G A 576 -9.362 85.987 109.710 1.00 76.33 P
ATOM 3 OP1 G A 576 -10.837 85.855 109.693 1.00 76.74 O
ATOM 4 OP2 G A 576 -8.541 84.966 110.410 1.00 76.05 O
ATOM 5 O5' G A 576 -8.854 86.135 108.204 1.00 76.09 O
ATOM 6 C5' G A 576 -7.474 86.444 107.915 1.00 74.37 C
ATOM 7 C4' G A 576 -7.281 87.945 107.790 1.00 73.24 C
ATOM 8 O4' G A 576 -5.990 88.311 108.334 1.00 72.26 O
ATOM 9 C3' G A 576 -7.328 88.570 106.399 1.00 71.94 C
ATOM 10 O3' G A 576 -7.748 89.924 106.595 1.00 72.68 O
ATOM 11 C2' G A 576 -5.856 88.528 105.997 1.00 70.42 C
ATOM 12 O2' G A 576 -5.517 89.463 104.997 1.00 69.74 O
ATOM 13 C1' G A 576 -5.198 88.900 107.324 1.00 69.63 C
ATOM 14 N9 G A 576 -3.828 88.458 107.548 1.00 66.40 N
ATOM 15 C8 G A 576 -3.207 87.332 107.062 1.00 65.16 C
ATOM 16 N7 G A 576 -1.996 87.182 107.519 1.00 64.04 N
ATOM 17 C5 G A 576 -1.802 88.286 108.339 1.00 64.32 C
ATOM 18 C6 G A 576 -0.685 88.665 109.113 1.00 64.89 C
ATOM 19 O6 G A 576 0.398 88.080 109.238 1.00 65.27 O
ATOM 20 N1 G A 576 -0.915 89.859 109.794 1.00 64.51 N
ATOM 21 C2 G A 576 -2.073 90.590 109.735 1.00 62.98 C
ATOM 22 N2 G A 576 -2.106 91.716 110.463 1.00 61.52 N
ATOM 23 N3 G A 576 -3.121 90.244 109.018 1.00 62.60 N
ATOM 24 C4 G A 576 -2.917 89.089 108.351 1.00 63.97 C
ATOM 25 P U A 577 -8.294 90.801 105.363 1.00 73.32 P
ATOM 26 OP1 U A 577 -8.999 89.908 104.402 1.00 72.59 O
ATOM 27 OP2 U A 577 -7.183 91.661 104.887 1.00 72.90 O
ATOM 28 O5' U A 577 -9.362 91.762 106.054 1.00 71.36 O
TER
ATOM 1 O3' G B 556 0.371 94.531 112.303 1.00 53.94 O
ATOM 2 P A B 557 -0.139 93.320 113.236 1.00 54.75 P
ATOM 3 OP1 A B 557 0.589 93.476 114.520 1.00 54.24 O
ATOM 4 OP2 A B 557 -0.095 92.011 112.519 1.00 52.31 O
ATOM 5 O5' A B 557 -1.673 93.676 113.458 1.00 57.30 O
ATOM 6 C5' A B 557 -2.175 94.025 114.754 1.00 57.66 C
ATOM 7 C4' A B 557 -2.037 95.505 114.976 1.00 57.44 C
ATOM 8 O4' A B 557 -2.450 96.229 113.790 1.00 56.31 O
ATOM 9 C3' A B 557 -2.906 96.041 116.093 1.00 58.21 C
ATOM 10 O3' A B 557 -2.300 95.864 117.360 1.00 61.27 O
ATOM 11 C2' A B 557 -3.132 97.485 115.673 1.00 57.26 C
ATOM 12 O2' A B 557 -2.060 98.357 115.966 1.00 54.43 O
ATOM 13 C1' A B 557 -3.287 97.309 114.161 1.00 57.04 C
ATOM 14 N9 A B 557 -4.657 96.933 113.819 1.00 57.96 N
ATOM 15 C8 A B 557 -5.096 95.773 113.222 1.00 57.73 C
ATOM 16 N7 A B 557 -6.396 95.717 113.071 1.00 57.71 N
ATOM 17 C5 A B 557 -6.843 96.920 113.597 1.00 58.25 C
ATOM 18 C6 A B 557 -8.122 97.468 113.733 1.00 58.55 C
ATOM 19 N6 A B 557 -9.234 96.847 113.336 1.00 58.96 N
ATOM 20 N1 A B 557 -8.225 98.695 114.297 1.00 59.09 N
ATOM 21 C2 A B 557 -7.105 99.317 114.694 1.00 58.02 C
ATOM 22 N3 A B 557 -5.846 98.903 114.621 1.00 57.85 N
ATOM 23 C4 A B 557 -5.783 97.682 114.056 1.00 58.20 C
ATOM 24 P C B 558 -3.218 95.575 118.640 1.00 62.96 P
ATOM 25 OP1 C B 558 -2.323 95.220 119.771 1.00 62.71 O
ATOM 26 OP2 C B 558 -4.287 94.629 118.224 1.00 61.90 O
ATOM 27 O5' C B 558 -3.838 97.003 118.964 1.00 62.40 O
TER
ATOM 2 P G A 576 -9.362 85.987 109.710 1.00 76.33 P
ATOM 3 OP1 G A 576 -10.837 85.855 109.693 1.00 76.74 O
ATOM 4 OP2 G A 576 -8.541 84.966 110.410 1.00 76.05 O
ATOM 5 O5' G A 576 -8.854 86.135 108.204 1.00 76.09 O
ATOM 6 C5' G A 576 -7.474 86.444 107.915 1.00 74.37 C
ATOM 7 C4' G A 576 -7.281 87.945 107.790 1.00 73.24 C
ATOM 8 O4' G A 576 -5.990 88.311 108.334 1.00 72.26 O
ATOM 9 C3' G A 576 -7.328 88.570 106.399 1.00 71.94 C
ATOM 10 O3' G A 576 -7.748 89.924 106.595 1.00 72.68 O
ATOM 11 C2' G A 576 -5.856 88.528 105.997 1.00 70.42 C
ATOM 12 O2' G A 576 -5.517 89.463 104.997 1.00 69.74 O
ATOM 13 C1' G A 576 -5.198 88.900 107.324 1.00 69.63 C
ATOM 14 N9 G A 576 -3.828 88.458 107.548 1.00 66.40 N
ATOM 15 C8 G A 576 -3.207 87.332 107.062 1.00 65.16 C
ATOM 16 N7 G A 576 -1.996 87.182 107.519 1.00 64.04 N
ATOM 17 C5 G A 576 -1.802 88.286 108.339 1.00 64.32 C
ATOM 18 C6 G A 576 -0.685 88.665 109.113 1.00 64.89 C
ATOM 19 O6 G A 576 0.398 88.080 109.238 1.00 65.27 O
ATOM 20 N1 G A 576 -0.915 89.859 109.794 1.00 64.51 N
ATOM 21 C2 G A 576 -2.073 90.590 109.735 1.00 62.98 C
ATOM 22 N2 G A 576 -2.106 91.716 110.463 1.00 61.52 N
ATOM 23 N3 G A 576 -3.121 90.244 109.018 1.00 62.60 N
ATOM 24 C4 G A 576 -2.917 89.089 108.351 1.00 63.97 C
ATOM 25 P U A 577 -8.294 90.801 105.363 1.00 73.32 P
ATOM 26 OP1 U A 577 -8.999 89.908 104.402 1.00 72.59 O
ATOM 27 OP2 U A 577 -7.183 91.661 104.887 1.00 72.90 O
ATOM 28 O5' U A 577 -9.362 91.762 106.054 1.00 71.36 O
TER
ATOM 1 O3' G B 556 0.371 94.531 112.303 1.00 53.94 O
ATOM 2 P A B 557 -0.139 93.320 113.236 1.00 54.75 P
ATOM 3 OP1 A B 557 0.589 93.476 114.520 1.00 54.24 O
ATOM 4 OP2 A B 557 -0.095 92.011 112.519 1.00 52.31 O
ATOM 5 O5' A B 557 -1.673 93.676 113.458 1.00 57.30 O
ATOM 6 C5' A B 557 -2.175 94.025 114.754 1.00 57.66 C
ATOM 7 C4' A B 557 -2.037 95.505 114.976 1.00 57.44 C
ATOM 8 O4' A B 557 -2.450 96.229 113.790 1.00 56.31 O
ATOM 9 C3' A B 557 -2.906 96.041 116.093 1.00 58.21 C
ATOM 10 O3' A B 557 -2.300 95.864 117.360 1.00 61.27 O
ATOM 11 C2' A B 557 -3.132 97.485 115.673 1.00 57.26 C
ATOM 12 O2' A B 557 -2.060 98.357 115.966 1.00 54.43 O
ATOM 13 C1' A B 557 -3.287 97.309 114.161 1.00 57.04 C
ATOM 14 N9 A B 557 -4.657 96.933 113.819 1.00 57.96 N
ATOM 15 C8 A B 557 -5.096 95.773 113.222 1.00 57.73 C
ATOM 16 N7 A B 557 -6.396 95.717 113.071 1.00 57.71 N
ATOM 17 C5 A B 557 -6.843 96.920 113.597 1.00 58.25 C
ATOM 18 C6 A B 557 -8.122 97.468 113.733 1.00 58.55 C
ATOM 19 N6 A B 557 -9.234 96.847 113.336 1.00 58.96 N
ATOM 20 N1 A B 557 -8.225 98.695 114.297 1.00 59.09 N
ATOM 21 C2 A B 557 -7.105 99.317 114.694 1.00 58.02 C
ATOM 22 N3 A B 557 -5.846 98.903 114.621 1.00 57.85 N
ATOM 23 C4 A B 557 -5.783 97.682 114.056 1.00 58.20 C
ATOM 24 P C B 558 -3.218 95.575 118.640 1.00 62.96 P
ATOM 25 OP1 C B 558 -2.323 95.220 119.771 1.00 62.71 O
ATOM 26 OP2 C B 558 -4.287 94.629 118.224 1.00 61.90 O
ATOM 27 O5' C B 558 -3.838 97.003 118.964 1.00 62.40 O
TER
Atoms:
OP1: (-10.837,85.855,109.693)
OP2: (-8.541,84.966,110.410)
C3': (-7.328,88.570,106.399)
C1': (-5.198,88.900,107.324)
C5': (-7.474,86.444,107.915)
O6: (0.398,88.080,109.238)
O4': (-5.990,88.311,108.334)
C8: (-3.207,87.332,107.062)
C2: (-2.073,90.590,109.735)
C6: (-0.685,88.665,109.113)
C5: (-1.802,88.286,108.339)
C4: (-2.917,89.089,108.351)
P: (-9.362,85.987,109.710)
C4': (-7.281,87.945,107.790)
C2': (-5.856,88.528,105.997)
O2': (-5.517,89.463,104.997)
N1: (-0.915,89.859,109.794)
N2: (-2.106,91.716,110.463)
N3: (-3.121,90.244,109.018)
N7: (-1.996,87.182,107.519)
N9: (-3.828,88.458,107.548)
O5': (-8.854,86.135,108.204)
O3': (-7.748,89.924,106.595)
OP2: (-8.541,84.966,110.410)
C3': (-7.328,88.570,106.399)
C1': (-5.198,88.900,107.324)
C5': (-7.474,86.444,107.915)
O6: (0.398,88.080,109.238)
O4': (-5.990,88.311,108.334)
C8: (-3.207,87.332,107.062)
C2: (-2.073,90.590,109.735)
C6: (-0.685,88.665,109.113)
C5: (-1.802,88.286,108.339)
C4: (-2.917,89.089,108.351)
P: (-9.362,85.987,109.710)
C4': (-7.281,87.945,107.790)
C2': (-5.856,88.528,105.997)
O2': (-5.517,89.463,104.997)
N1: (-0.915,89.859,109.794)
N2: (-2.106,91.716,110.463)
N3: (-3.121,90.244,109.018)
N7: (-1.996,87.182,107.519)
N9: (-3.828,88.458,107.548)
O5': (-8.854,86.135,108.204)
O3': (-7.748,89.924,106.595)
OP1: (0.589,93.476,114.520)
OP2: (-0.095,92.011,112.519)
C3': (-2.906,96.041,116.093)
C1': (-3.287,97.309,114.161)
C5': (-2.175,94.025,114.754)
O4': (-2.450,96.229,113.790)
C8: (-5.096,95.773,113.222)
O2': (-2.060,98.357,115.966)
C6: (-8.122,97.468,113.733)
C5: (-6.843,96.920,113.597)
C4: (-5.783,97.682,114.056)
P: (-0.139,93.320,113.236)
C4': (-2.037,95.505,114.976)
C2': (-3.132,97.485,115.673)
C2: (-7.105,99.317,114.694)
N1: (-8.225,98.695,114.297)
N3: (-5.846,98.903,114.621)
N6: (-9.234,96.847,113.336)
N7: (-6.396,95.717,113.071)
N9: (-4.657,96.933,113.819)
O5': (-1.673,93.676,113.458)
O3': (-2.300,95.864,117.360)
OP2: (-0.095,92.011,112.519)
C3': (-2.906,96.041,116.093)
C1': (-3.287,97.309,114.161)
C5': (-2.175,94.025,114.754)
O4': (-2.450,96.229,113.790)
C8: (-5.096,95.773,113.222)
O2': (-2.060,98.357,115.966)
C6: (-8.122,97.468,113.733)
C5: (-6.843,96.920,113.597)
C4: (-5.783,97.682,114.056)
P: (-0.139,93.320,113.236)
C4': (-2.037,95.505,114.976)
C2': (-3.132,97.485,115.673)
C2: (-7.105,99.317,114.694)
N1: (-8.225,98.695,114.297)
N3: (-5.846,98.903,114.621)
N6: (-9.234,96.847,113.336)
N7: (-6.396,95.717,113.071)
N9: (-4.657,96.933,113.819)
O5': (-1.673,93.676,113.458)
O3': (-2.300,95.864,117.360)
Image (generated by PyMOL):