Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A2041:A2490
Extra
PDB:
ATOM 1 O3' G A2040 52.335 128.150 106.424 1.00 34.23 O
ATOM 2 P A A2041 52.785 128.061 104.878 1.00 33.50 P
ATOM 3 OP1 A A2041 53.207 126.671 104.620 1.00 34.65 O
ATOM 4 OP2 A A2041 53.740 129.164 104.631 1.00 35.00 O
ATOM 5 O5' A A2041 51.442 128.321 104.070 1.00 31.78 O
ATOM 6 C5' A A2041 50.344 127.422 104.185 1.00 32.44 C
ATOM 7 C4' A A2041 49.163 127.923 103.394 1.00 34.53 C
ATOM 8 O4' A A2041 48.840 129.273 103.799 1.00 35.92 O
ATOM 9 C3' A A2041 49.339 128.036 101.892 1.00 33.50 C
ATOM 10 O3' A A2041 49.137 126.789 101.265 1.00 32.92 O
ATOM 11 C2' A A2041 48.237 129.016 101.514 1.00 34.80 C
ATOM 12 O2' A A2041 46.973 128.369 101.509 1.00 35.42 O
ATOM 13 C1' A A2041 48.264 129.973 102.706 1.00 35.30 C
ATOM 14 N9 A A2041 49.030 131.205 102.472 1.00 34.15 N
ATOM 15 C8 A A2041 50.278 131.516 102.933 1.00 34.36 C
ATOM 16 N7 A A2041 50.692 132.706 102.580 1.00 33.96 N
ATOM 17 C5 A A2041 49.651 133.211 101.826 1.00 33.92 C
ATOM 18 C6 A A2041 49.477 134.427 101.150 1.00 33.89 C
ATOM 19 N6 A A2041 50.399 135.393 101.105 1.00 32.44 N
ATOM 20 N1 A A2041 48.311 134.615 100.493 1.00 35.07 N
ATOM 21 C2 A A2041 47.403 133.634 100.504 1.00 34.57 C
ATOM 22 N3 A A2041 47.457 132.451 101.090 1.00 35.07 N
ATOM 23 C4 A A2041 48.620 132.297 101.745 1.00 33.94 C
ATOM 24 P A A2042 49.857 126.483 99.873 1.00 32.90 P
ATOM 25 OP1 A A2042 49.923 127.707 99.037 1.00 33.06 O
ATOM 26 OP2 A A2042 49.172 125.295 99.364 1.00 33.61 O
ATOM 27 O5' A A2042 51.336 126.092 100.298 1.00 30.63 O
TER
ATOM 1 O3' U B2489 53.322 146.041 98.014 1.00 33.68 O
ATOM 2 P A B2490 52.514 145.366 99.200 1.00 34.44 P
ATOM 3 OP1 A B2490 51.662 146.381 99.858 1.00 37.45 O
ATOM 4 OP2 A B2490 53.489 144.615 99.996 1.00 35.90 O
ATOM 5 O5' A B2490 51.557 144.386 98.399 1.00 36.38 O
ATOM 6 C5' A B2490 51.707 142.982 98.456 1.00 36.92 C
ATOM 7 C4' A B2490 50.379 142.350 98.747 1.00 38.47 C
ATOM 8 O4' A B2490 50.638 141.062 99.336 1.00 40.67 O
ATOM 9 C3' A B2490 49.552 143.070 99.801 1.00 40.39 C
ATOM 10 O3' A B2490 48.230 142.555 99.764 1.00 39.52 O
ATOM 11 C2' A B2490 50.214 142.612 101.089 1.00 41.71 C
ATOM 12 O2' A B2490 49.309 142.675 102.168 1.00 43.44 O
ATOM 13 C1' A B2490 50.568 141.160 100.747 1.00 41.23 C
ATOM 14 N9 A B2490 51.867 140.749 101.274 1.00 40.84 N
ATOM 15 C8 A B2490 53.104 141.262 100.981 1.00 40.23 C
ATOM 16 N7 A B2490 54.076 140.716 101.659 1.00 40.21 N
ATOM 17 C5 A B2490 53.441 139.772 102.446 1.00 40.59 C
ATOM 18 C6 A B2490 53.916 138.873 103.411 1.00 40.18 C
ATOM 19 N6 A B2490 55.189 138.814 103.799 1.00 40.15 N
ATOM 20 N1 A B2490 53.023 138.042 103.990 1.00 39.89 N
ATOM 21 C2 A B2490 51.737 138.139 103.637 1.00 39.55 C
ATOM 22 N3 A B2490 51.164 138.964 102.767 1.00 41.65 N
ATOM 23 C4 A B2490 52.083 139.763 102.199 1.00 41.21 C
ATOM 24 P U B2491 47.064 143.383 99.057 1.00 39.31 P
ATOM 25 OP1 U B2491 47.674 144.227 98.011 1.00 41.23 O
ATOM 26 OP2 U B2491 46.252 144.002 100.109 1.00 37.85 O
ATOM 27 O5' U B2491 46.233 142.234 98.341 1.00 38.93 O
TER
ATOM 2 P A A2041 52.785 128.061 104.878 1.00 33.50 P
ATOM 3 OP1 A A2041 53.207 126.671 104.620 1.00 34.65 O
ATOM 4 OP2 A A2041 53.740 129.164 104.631 1.00 35.00 O
ATOM 5 O5' A A2041 51.442 128.321 104.070 1.00 31.78 O
ATOM 6 C5' A A2041 50.344 127.422 104.185 1.00 32.44 C
ATOM 7 C4' A A2041 49.163 127.923 103.394 1.00 34.53 C
ATOM 8 O4' A A2041 48.840 129.273 103.799 1.00 35.92 O
ATOM 9 C3' A A2041 49.339 128.036 101.892 1.00 33.50 C
ATOM 10 O3' A A2041 49.137 126.789 101.265 1.00 32.92 O
ATOM 11 C2' A A2041 48.237 129.016 101.514 1.00 34.80 C
ATOM 12 O2' A A2041 46.973 128.369 101.509 1.00 35.42 O
ATOM 13 C1' A A2041 48.264 129.973 102.706 1.00 35.30 C
ATOM 14 N9 A A2041 49.030 131.205 102.472 1.00 34.15 N
ATOM 15 C8 A A2041 50.278 131.516 102.933 1.00 34.36 C
ATOM 16 N7 A A2041 50.692 132.706 102.580 1.00 33.96 N
ATOM 17 C5 A A2041 49.651 133.211 101.826 1.00 33.92 C
ATOM 18 C6 A A2041 49.477 134.427 101.150 1.00 33.89 C
ATOM 19 N6 A A2041 50.399 135.393 101.105 1.00 32.44 N
ATOM 20 N1 A A2041 48.311 134.615 100.493 1.00 35.07 N
ATOM 21 C2 A A2041 47.403 133.634 100.504 1.00 34.57 C
ATOM 22 N3 A A2041 47.457 132.451 101.090 1.00 35.07 N
ATOM 23 C4 A A2041 48.620 132.297 101.745 1.00 33.94 C
ATOM 24 P A A2042 49.857 126.483 99.873 1.00 32.90 P
ATOM 25 OP1 A A2042 49.923 127.707 99.037 1.00 33.06 O
ATOM 26 OP2 A A2042 49.172 125.295 99.364 1.00 33.61 O
ATOM 27 O5' A A2042 51.336 126.092 100.298 1.00 30.63 O
TER
ATOM 1 O3' U B2489 53.322 146.041 98.014 1.00 33.68 O
ATOM 2 P A B2490 52.514 145.366 99.200 1.00 34.44 P
ATOM 3 OP1 A B2490 51.662 146.381 99.858 1.00 37.45 O
ATOM 4 OP2 A B2490 53.489 144.615 99.996 1.00 35.90 O
ATOM 5 O5' A B2490 51.557 144.386 98.399 1.00 36.38 O
ATOM 6 C5' A B2490 51.707 142.982 98.456 1.00 36.92 C
ATOM 7 C4' A B2490 50.379 142.350 98.747 1.00 38.47 C
ATOM 8 O4' A B2490 50.638 141.062 99.336 1.00 40.67 O
ATOM 9 C3' A B2490 49.552 143.070 99.801 1.00 40.39 C
ATOM 10 O3' A B2490 48.230 142.555 99.764 1.00 39.52 O
ATOM 11 C2' A B2490 50.214 142.612 101.089 1.00 41.71 C
ATOM 12 O2' A B2490 49.309 142.675 102.168 1.00 43.44 O
ATOM 13 C1' A B2490 50.568 141.160 100.747 1.00 41.23 C
ATOM 14 N9 A B2490 51.867 140.749 101.274 1.00 40.84 N
ATOM 15 C8 A B2490 53.104 141.262 100.981 1.00 40.23 C
ATOM 16 N7 A B2490 54.076 140.716 101.659 1.00 40.21 N
ATOM 17 C5 A B2490 53.441 139.772 102.446 1.00 40.59 C
ATOM 18 C6 A B2490 53.916 138.873 103.411 1.00 40.18 C
ATOM 19 N6 A B2490 55.189 138.814 103.799 1.00 40.15 N
ATOM 20 N1 A B2490 53.023 138.042 103.990 1.00 39.89 N
ATOM 21 C2 A B2490 51.737 138.139 103.637 1.00 39.55 C
ATOM 22 N3 A B2490 51.164 138.964 102.767 1.00 41.65 N
ATOM 23 C4 A B2490 52.083 139.763 102.199 1.00 41.21 C
ATOM 24 P U B2491 47.064 143.383 99.057 1.00 39.31 P
ATOM 25 OP1 U B2491 47.674 144.227 98.011 1.00 41.23 O
ATOM 26 OP2 U B2491 46.252 144.002 100.109 1.00 37.85 O
ATOM 27 O5' U B2491 46.233 142.234 98.341 1.00 38.93 O
TER
Atoms:
OP1: (53.207,126.671,104.620)
OP2: (53.740,129.164,104.631)
C3': (49.339,128.036,101.892)
C1': (48.264,129.973,102.706)
C5': (50.344,127.422,104.185)
O4': (48.840,129.273,103.799)
C8: (50.278,131.516,102.933)
O2': (46.973,128.369,101.509)
C6: (49.477,134.427,101.150)
C5: (49.651,133.211,101.826)
C4: (48.620,132.297,101.745)
P: (52.785,128.061,104.878)
C4': (49.163,127.923,103.394)
C2': (48.237,129.016,101.514)
C2: (47.403,133.634,100.504)
N1: (48.311,134.615,100.493)
N3: (47.457,132.451,101.090)
N6: (50.399,135.393,101.105)
N7: (50.692,132.706,102.580)
N9: (49.030,131.205,102.472)
O5': (51.442,128.321,104.070)
O3': (49.137,126.789,101.265)
OP2: (53.740,129.164,104.631)
C3': (49.339,128.036,101.892)
C1': (48.264,129.973,102.706)
C5': (50.344,127.422,104.185)
O4': (48.840,129.273,103.799)
C8: (50.278,131.516,102.933)
O2': (46.973,128.369,101.509)
C6: (49.477,134.427,101.150)
C5: (49.651,133.211,101.826)
C4: (48.620,132.297,101.745)
P: (52.785,128.061,104.878)
C4': (49.163,127.923,103.394)
C2': (48.237,129.016,101.514)
C2: (47.403,133.634,100.504)
N1: (48.311,134.615,100.493)
N3: (47.457,132.451,101.090)
N6: (50.399,135.393,101.105)
N7: (50.692,132.706,102.580)
N9: (49.030,131.205,102.472)
O5': (51.442,128.321,104.070)
O3': (49.137,126.789,101.265)
OP1: (51.662,146.381,99.858)
OP2: (53.489,144.615,99.996)
C3': (49.552,143.070,99.801)
C1': (50.568,141.160,100.747)
C5': (51.707,142.982,98.456)
O4': (50.638,141.062,99.336)
C8: (53.104,141.262,100.981)
O2': (49.309,142.675,102.168)
C6: (53.916,138.873,103.411)
C5: (53.441,139.772,102.446)
C4: (52.083,139.763,102.199)
P: (52.514,145.366,99.200)
C4': (50.379,142.350,98.747)
C2': (50.214,142.612,101.089)
C2: (51.737,138.139,103.637)
N1: (53.023,138.042,103.990)
N3: (51.164,138.964,102.767)
N6: (55.189,138.814,103.799)
N7: (54.076,140.716,101.659)
N9: (51.867,140.749,101.274)
O5': (51.557,144.386,98.399)
O3': (48.230,142.555,99.764)
OP2: (53.489,144.615,99.996)
C3': (49.552,143.070,99.801)
C1': (50.568,141.160,100.747)
C5': (51.707,142.982,98.456)
O4': (50.638,141.062,99.336)
C8: (53.104,141.262,100.981)
O2': (49.309,142.675,102.168)
C6: (53.916,138.873,103.411)
C5: (53.441,139.772,102.446)
C4: (52.083,139.763,102.199)
P: (52.514,145.366,99.200)
C4': (50.379,142.350,98.747)
C2': (50.214,142.612,101.089)
C2: (51.737,138.139,103.637)
N1: (53.023,138.042,103.990)
N3: (51.164,138.964,102.767)
N6: (55.189,138.814,103.799)
N7: (54.076,140.716,101.659)
N9: (51.867,140.749,101.274)
O5': (51.557,144.386,98.399)
O3': (48.230,142.555,99.764)
Image (generated by PyMOL):