Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02041:02490
Extra
PDB:
ATOM 1 O3' G A2040 52.199 128.055 106.041 1.00 30.41 O
ATOM 2 P A A2041 52.666 127.938 104.503 1.00 29.61 P
ATOM 3 OP1 A A2041 53.086 126.533 104.304 1.00 28.65 O
ATOM 4 OP2 A A2041 53.612 129.038 104.172 1.00 30.74 O
ATOM 5 O5' A A2041 51.333 128.184 103.672 1.00 29.55 O
ATOM 6 C5' A A2041 50.206 127.311 103.822 1.00 28.12 C
ATOM 7 C4' A A2041 49.022 127.847 103.063 1.00 28.28 C
ATOM 8 O4' A A2041 48.740 129.200 103.501 1.00 29.37 O
ATOM 9 C3' A A2041 49.171 127.978 101.556 1.00 28.94 C
ATOM 10 O3' A A2041 48.897 126.732 100.936 1.00 30.70 O
ATOM 11 C2' A A2041 48.078 128.984 101.221 1.00 29.65 C
ATOM 12 O2' A A2041 46.796 128.375 101.204 1.00 30.76 O
ATOM 13 C1' A A2041 48.148 129.925 102.431 1.00 30.55 C
ATOM 14 N9 A A2041 48.904 131.163 102.213 1.00 31.08 N
ATOM 15 C8 A A2041 50.161 131.488 102.668 1.00 31.44 C
ATOM 16 N7 A A2041 50.562 132.684 102.311 1.00 31.08 N
ATOM 17 C5 A A2041 49.503 133.179 101.565 1.00 31.25 C
ATOM 18 C6 A A2041 49.307 134.400 100.898 1.00 31.32 C
ATOM 19 N6 A A2041 50.220 135.376 100.850 1.00 27.78 N
ATOM 20 N1 A A2041 48.125 134.585 100.267 1.00 30.18 N
ATOM 21 C2 A A2041 47.222 133.600 100.295 1.00 28.46 C
ATOM 22 N3 A A2041 47.295 132.408 100.871 1.00 29.66 N
ATOM 23 C4 A A2041 48.473 132.256 101.499 1.00 30.87 C
ATOM 24 P A A2042 49.639 126.324 99.573 1.00 33.23 P
ATOM 25 OP1 A A2042 49.669 127.515 98.671 1.00 33.90 O
ATOM 26 OP2 A A2042 48.991 125.078 99.112 1.00 32.23 O
ATOM 27 O5' A A2042 51.123 125.964 100.034 1.00 31.58 O
TER
ATOM 1 O3' U B2489 53.286 146.073 97.752 1.00 31.48 O
ATOM 2 P A B2490 52.399 145.330 98.858 1.00 31.50 P
ATOM 3 OP1 A B2490 51.428 146.307 99.385 1.00 32.31 O
ATOM 4 OP2 A B2490 53.310 144.641 99.790 1.00 35.66 O
ATOM 5 O5' A B2490 51.558 144.289 98.000 1.00 34.80 O
ATOM 6 C5' A B2490 51.652 142.900 98.237 1.00 35.15 C
ATOM 7 C4' A B2490 50.282 142.309 98.450 1.00 36.07 C
ATOM 8 O4' A B2490 50.491 141.023 99.080 1.00 37.89 O
ATOM 9 C3' A B2490 49.389 143.040 99.444 1.00 37.22 C
ATOM 10 O3' A B2490 48.070 142.510 99.319 1.00 37.76 O
ATOM 11 C2' A B2490 50.009 142.612 100.772 1.00 37.80 C
ATOM 12 O2' A B2490 49.128 142.665 101.873 1.00 39.93 O
ATOM 13 C1' A B2490 50.388 141.158 100.485 1.00 37.57 C
ATOM 14 N9 A B2490 51.682 140.801 101.063 1.00 37.23 N
ATOM 15 C8 A B2490 52.890 141.408 100.838 1.00 35.16 C
ATOM 16 N7 A B2490 53.876 140.888 101.521 1.00 36.80 N
ATOM 17 C5 A B2490 53.281 139.864 102.240 1.00 35.98 C
ATOM 18 C6 A B2490 53.791 138.945 103.163 1.00 36.79 C
ATOM 19 N6 A B2490 55.072 138.917 103.543 1.00 37.43 N
ATOM 20 N1 A B2490 52.933 138.049 103.698 1.00 35.08 N
ATOM 21 C2 A B2490 51.648 138.095 103.329 1.00 34.98 C
ATOM 22 N3 A B2490 51.048 138.919 102.479 1.00 35.35 N
ATOM 23 C4 A B2490 51.931 139.791 101.961 1.00 36.43 C
ATOM 24 P U B2491 46.854 143.428 98.801 1.00 36.89 P
ATOM 25 OP1 U B2491 47.246 144.137 97.560 1.00 39.16 O
ATOM 26 OP2 U B2491 46.365 144.195 99.954 1.00 37.33 O
ATOM 27 O5' U B2491 45.744 142.339 98.462 1.00 36.62 O
TER
ATOM 2 P A A2041 52.666 127.938 104.503 1.00 29.61 P
ATOM 3 OP1 A A2041 53.086 126.533 104.304 1.00 28.65 O
ATOM 4 OP2 A A2041 53.612 129.038 104.172 1.00 30.74 O
ATOM 5 O5' A A2041 51.333 128.184 103.672 1.00 29.55 O
ATOM 6 C5' A A2041 50.206 127.311 103.822 1.00 28.12 C
ATOM 7 C4' A A2041 49.022 127.847 103.063 1.00 28.28 C
ATOM 8 O4' A A2041 48.740 129.200 103.501 1.00 29.37 O
ATOM 9 C3' A A2041 49.171 127.978 101.556 1.00 28.94 C
ATOM 10 O3' A A2041 48.897 126.732 100.936 1.00 30.70 O
ATOM 11 C2' A A2041 48.078 128.984 101.221 1.00 29.65 C
ATOM 12 O2' A A2041 46.796 128.375 101.204 1.00 30.76 O
ATOM 13 C1' A A2041 48.148 129.925 102.431 1.00 30.55 C
ATOM 14 N9 A A2041 48.904 131.163 102.213 1.00 31.08 N
ATOM 15 C8 A A2041 50.161 131.488 102.668 1.00 31.44 C
ATOM 16 N7 A A2041 50.562 132.684 102.311 1.00 31.08 N
ATOM 17 C5 A A2041 49.503 133.179 101.565 1.00 31.25 C
ATOM 18 C6 A A2041 49.307 134.400 100.898 1.00 31.32 C
ATOM 19 N6 A A2041 50.220 135.376 100.850 1.00 27.78 N
ATOM 20 N1 A A2041 48.125 134.585 100.267 1.00 30.18 N
ATOM 21 C2 A A2041 47.222 133.600 100.295 1.00 28.46 C
ATOM 22 N3 A A2041 47.295 132.408 100.871 1.00 29.66 N
ATOM 23 C4 A A2041 48.473 132.256 101.499 1.00 30.87 C
ATOM 24 P A A2042 49.639 126.324 99.573 1.00 33.23 P
ATOM 25 OP1 A A2042 49.669 127.515 98.671 1.00 33.90 O
ATOM 26 OP2 A A2042 48.991 125.078 99.112 1.00 32.23 O
ATOM 27 O5' A A2042 51.123 125.964 100.034 1.00 31.58 O
TER
ATOM 1 O3' U B2489 53.286 146.073 97.752 1.00 31.48 O
ATOM 2 P A B2490 52.399 145.330 98.858 1.00 31.50 P
ATOM 3 OP1 A B2490 51.428 146.307 99.385 1.00 32.31 O
ATOM 4 OP2 A B2490 53.310 144.641 99.790 1.00 35.66 O
ATOM 5 O5' A B2490 51.558 144.289 98.000 1.00 34.80 O
ATOM 6 C5' A B2490 51.652 142.900 98.237 1.00 35.15 C
ATOM 7 C4' A B2490 50.282 142.309 98.450 1.00 36.07 C
ATOM 8 O4' A B2490 50.491 141.023 99.080 1.00 37.89 O
ATOM 9 C3' A B2490 49.389 143.040 99.444 1.00 37.22 C
ATOM 10 O3' A B2490 48.070 142.510 99.319 1.00 37.76 O
ATOM 11 C2' A B2490 50.009 142.612 100.772 1.00 37.80 C
ATOM 12 O2' A B2490 49.128 142.665 101.873 1.00 39.93 O
ATOM 13 C1' A B2490 50.388 141.158 100.485 1.00 37.57 C
ATOM 14 N9 A B2490 51.682 140.801 101.063 1.00 37.23 N
ATOM 15 C8 A B2490 52.890 141.408 100.838 1.00 35.16 C
ATOM 16 N7 A B2490 53.876 140.888 101.521 1.00 36.80 N
ATOM 17 C5 A B2490 53.281 139.864 102.240 1.00 35.98 C
ATOM 18 C6 A B2490 53.791 138.945 103.163 1.00 36.79 C
ATOM 19 N6 A B2490 55.072 138.917 103.543 1.00 37.43 N
ATOM 20 N1 A B2490 52.933 138.049 103.698 1.00 35.08 N
ATOM 21 C2 A B2490 51.648 138.095 103.329 1.00 34.98 C
ATOM 22 N3 A B2490 51.048 138.919 102.479 1.00 35.35 N
ATOM 23 C4 A B2490 51.931 139.791 101.961 1.00 36.43 C
ATOM 24 P U B2491 46.854 143.428 98.801 1.00 36.89 P
ATOM 25 OP1 U B2491 47.246 144.137 97.560 1.00 39.16 O
ATOM 26 OP2 U B2491 46.365 144.195 99.954 1.00 37.33 O
ATOM 27 O5' U B2491 45.744 142.339 98.462 1.00 36.62 O
TER
Atoms:
OP1: (53.086,126.533,104.304)
OP2: (53.612,129.038,104.172)
C3': (49.171,127.978,101.556)
C1': (48.148,129.925,102.431)
C5': (50.206,127.311,103.822)
O4': (48.740,129.200,103.501)
C8: (50.161,131.488,102.668)
O2': (46.796,128.375,101.204)
C6: (49.307,134.400,100.898)
C5: (49.503,133.179,101.565)
C4: (48.473,132.256,101.499)
P: (52.666,127.938,104.503)
C4': (49.022,127.847,103.063)
C2': (48.078,128.984,101.221)
C2: (47.222,133.600,100.295)
N1: (48.125,134.585,100.267)
N3: (47.295,132.408,100.871)
N6: (50.220,135.376,100.850)
N7: (50.562,132.684,102.311)
N9: (48.904,131.163,102.213)
O5': (51.333,128.184,103.672)
O3': (48.897,126.732,100.936)
OP2: (53.612,129.038,104.172)
C3': (49.171,127.978,101.556)
C1': (48.148,129.925,102.431)
C5': (50.206,127.311,103.822)
O4': (48.740,129.200,103.501)
C8: (50.161,131.488,102.668)
O2': (46.796,128.375,101.204)
C6: (49.307,134.400,100.898)
C5: (49.503,133.179,101.565)
C4: (48.473,132.256,101.499)
P: (52.666,127.938,104.503)
C4': (49.022,127.847,103.063)
C2': (48.078,128.984,101.221)
C2: (47.222,133.600,100.295)
N1: (48.125,134.585,100.267)
N3: (47.295,132.408,100.871)
N6: (50.220,135.376,100.850)
N7: (50.562,132.684,102.311)
N9: (48.904,131.163,102.213)
O5': (51.333,128.184,103.672)
O3': (48.897,126.732,100.936)
OP1: (51.428,146.307,99.385)
OP2: (53.310,144.641,99.790)
C3': (49.389,143.040,99.444)
C1': (50.388,141.158,100.485)
C5': (51.652,142.900,98.237)
O4': (50.491,141.023,99.080)
C8: (52.890,141.408,100.838)
O2': (49.128,142.665,101.873)
C6: (53.791,138.945,103.163)
C5: (53.281,139.864,102.240)
C4: (51.931,139.791,101.961)
P: (52.399,145.330,98.858)
C4': (50.282,142.309,98.450)
C2': (50.009,142.612,100.772)
C2: (51.648,138.095,103.329)
N1: (52.933,138.049,103.698)
N3: (51.048,138.919,102.479)
N6: (55.072,138.917,103.543)
N7: (53.876,140.888,101.521)
N9: (51.682,140.801,101.063)
O5': (51.558,144.289,98.000)
O3': (48.070,142.510,99.319)
OP2: (53.310,144.641,99.790)
C3': (49.389,143.040,99.444)
C1': (50.388,141.158,100.485)
C5': (51.652,142.900,98.237)
O4': (50.491,141.023,99.080)
C8: (52.890,141.408,100.838)
O2': (49.128,142.665,101.873)
C6: (53.791,138.945,103.163)
C5: (53.281,139.864,102.240)
C4: (51.931,139.791,101.961)
P: (52.399,145.330,98.858)
C4': (50.282,142.309,98.450)
C2': (50.009,142.612,100.772)
C2: (51.648,138.095,103.329)
N1: (52.933,138.049,103.698)
N3: (51.048,138.919,102.479)
N6: (55.072,138.917,103.543)
N7: (53.876,140.888,101.521)
N9: (51.682,140.801,101.063)
O5': (51.558,144.289,98.000)
O3': (48.070,142.510,99.319)
Image (generated by PyMOL):