Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02041:02490
Extra
PDB:
ATOM 1 O3' G A2040 52.444 128.212 106.321 1.00 35.77 O
ATOM 2 P A A2041 52.896 128.084 104.786 1.00 35.49 P
ATOM 3 OP1 A A2041 53.283 126.683 104.556 1.00 35.53 O
ATOM 4 OP2 A A2041 53.867 129.162 104.497 1.00 36.83 O
ATOM 5 O5' A A2041 51.565 128.375 103.965 1.00 34.32 O
ATOM 6 C5' A A2041 50.453 127.473 104.016 1.00 33.40 C
ATOM 7 C4' A A2041 49.273 128.059 103.283 1.00 35.14 C
ATOM 8 O4' A A2041 49.122 129.429 103.722 1.00 36.63 O
ATOM 9 C3' A A2041 49.368 128.209 101.768 1.00 36.13 C
ATOM 10 O3' A A2041 49.041 126.998 101.086 1.00 37.05 O
ATOM 11 C2' A A2041 48.293 129.254 101.503 1.00 37.17 C
ATOM 12 O2' A A2041 46.990 128.701 101.561 1.00 37.43 O
ATOM 13 C1' A A2041 48.460 130.176 102.713 1.00 37.38 C
ATOM 14 N9 A A2041 49.193 131.421 102.467 1.00 36.78 N
ATOM 15 C8 A A2041 50.453 131.762 102.886 1.00 38.96 C
ATOM 16 N7 A A2041 50.829 132.963 102.519 1.00 39.15 N
ATOM 17 C5 A A2041 49.747 133.445 101.805 1.00 38.68 C
ATOM 18 C6 A A2041 49.522 134.658 101.152 1.00 38.70 C
ATOM 19 N6 A A2041 50.412 135.647 101.110 1.00 37.27 N
ATOM 20 N1 A A2041 48.333 134.826 100.532 1.00 39.57 N
ATOM 21 C2 A A2041 47.442 133.830 100.571 1.00 38.16 C
ATOM 22 N3 A A2041 47.538 132.642 101.152 1.00 38.94 N
ATOM 23 C4 A A2041 48.731 132.508 101.762 1.00 39.04 C
ATOM 24 P A A2042 49.837 126.580 99.745 1.00 39.63 P
ATOM 25 OP1 A A2042 49.913 127.750 98.824 1.00 41.56 O
ATOM 26 OP2 A A2042 49.193 125.335 99.278 1.00 40.72 O
ATOM 27 O5' A A2042 51.315 126.228 100.245 1.00 36.46 O
TER
ATOM 1 O3' U B2489 53.313 146.333 97.996 1.00 44.88 O
ATOM 2 P A B2490 52.432 145.653 99.146 1.00 44.61 P
ATOM 3 OP1 A B2490 51.538 146.701 99.665 1.00 46.73 O
ATOM 4 OP2 A B2490 53.300 144.913 100.080 1.00 45.39 O
ATOM 5 O5' A B2490 51.490 144.654 98.345 1.00 46.14 O
ATOM 6 C5' A B2490 51.680 143.258 98.409 1.00 43.47 C
ATOM 7 C4' A B2490 50.387 142.583 98.753 1.00 44.16 C
ATOM 8 O4' A B2490 50.749 141.315 99.343 1.00 46.08 O
ATOM 9 C3' A B2490 49.547 143.276 99.822 1.00 46.33 C
ATOM 10 O3' A B2490 48.214 142.756 99.822 1.00 45.27 O
ATOM 11 C2' A B2490 50.249 142.829 101.098 1.00 47.97 C
ATOM 12 O2' A B2490 49.411 142.811 102.234 1.00 51.65 O
ATOM 13 C1' A B2490 50.639 141.395 100.749 1.00 47.75 C
ATOM 14 N9 A B2490 51.925 141.039 101.332 1.00 46.34 N
ATOM 15 C8 A B2490 53.140 141.632 101.119 1.00 46.29 C
ATOM 16 N7 A B2490 54.112 141.108 101.819 1.00 47.20 N
ATOM 17 C5 A B2490 53.496 140.097 102.535 1.00 46.43 C
ATOM 18 C6 A B2490 53.983 139.184 103.466 1.00 46.71 C
ATOM 19 N6 A B2490 55.257 139.151 103.866 1.00 46.49 N
ATOM 20 N1 A B2490 53.106 138.298 103.992 1.00 46.51 N
ATOM 21 C2 A B2490 51.823 138.355 103.605 1.00 44.76 C
ATOM 22 N3 A B2490 51.246 139.181 102.745 1.00 44.85 N
ATOM 23 C4 A B2490 52.149 140.036 102.237 1.00 46.11 C
ATOM 24 P U B2491 46.999 143.588 99.170 1.00 45.47 P
ATOM 25 OP1 U B2491 47.541 144.565 98.187 1.00 43.21 O
ATOM 26 OP2 U B2491 46.104 144.058 100.253 1.00 43.71 O
ATOM 27 O5' U B2491 46.216 142.430 98.402 1.00 45.34 O
TER
ATOM 2 P A A2041 52.896 128.084 104.786 1.00 35.49 P
ATOM 3 OP1 A A2041 53.283 126.683 104.556 1.00 35.53 O
ATOM 4 OP2 A A2041 53.867 129.162 104.497 1.00 36.83 O
ATOM 5 O5' A A2041 51.565 128.375 103.965 1.00 34.32 O
ATOM 6 C5' A A2041 50.453 127.473 104.016 1.00 33.40 C
ATOM 7 C4' A A2041 49.273 128.059 103.283 1.00 35.14 C
ATOM 8 O4' A A2041 49.122 129.429 103.722 1.00 36.63 O
ATOM 9 C3' A A2041 49.368 128.209 101.768 1.00 36.13 C
ATOM 10 O3' A A2041 49.041 126.998 101.086 1.00 37.05 O
ATOM 11 C2' A A2041 48.293 129.254 101.503 1.00 37.17 C
ATOM 12 O2' A A2041 46.990 128.701 101.561 1.00 37.43 O
ATOM 13 C1' A A2041 48.460 130.176 102.713 1.00 37.38 C
ATOM 14 N9 A A2041 49.193 131.421 102.467 1.00 36.78 N
ATOM 15 C8 A A2041 50.453 131.762 102.886 1.00 38.96 C
ATOM 16 N7 A A2041 50.829 132.963 102.519 1.00 39.15 N
ATOM 17 C5 A A2041 49.747 133.445 101.805 1.00 38.68 C
ATOM 18 C6 A A2041 49.522 134.658 101.152 1.00 38.70 C
ATOM 19 N6 A A2041 50.412 135.647 101.110 1.00 37.27 N
ATOM 20 N1 A A2041 48.333 134.826 100.532 1.00 39.57 N
ATOM 21 C2 A A2041 47.442 133.830 100.571 1.00 38.16 C
ATOM 22 N3 A A2041 47.538 132.642 101.152 1.00 38.94 N
ATOM 23 C4 A A2041 48.731 132.508 101.762 1.00 39.04 C
ATOM 24 P A A2042 49.837 126.580 99.745 1.00 39.63 P
ATOM 25 OP1 A A2042 49.913 127.750 98.824 1.00 41.56 O
ATOM 26 OP2 A A2042 49.193 125.335 99.278 1.00 40.72 O
ATOM 27 O5' A A2042 51.315 126.228 100.245 1.00 36.46 O
TER
ATOM 1 O3' U B2489 53.313 146.333 97.996 1.00 44.88 O
ATOM 2 P A B2490 52.432 145.653 99.146 1.00 44.61 P
ATOM 3 OP1 A B2490 51.538 146.701 99.665 1.00 46.73 O
ATOM 4 OP2 A B2490 53.300 144.913 100.080 1.00 45.39 O
ATOM 5 O5' A B2490 51.490 144.654 98.345 1.00 46.14 O
ATOM 6 C5' A B2490 51.680 143.258 98.409 1.00 43.47 C
ATOM 7 C4' A B2490 50.387 142.583 98.753 1.00 44.16 C
ATOM 8 O4' A B2490 50.749 141.315 99.343 1.00 46.08 O
ATOM 9 C3' A B2490 49.547 143.276 99.822 1.00 46.33 C
ATOM 10 O3' A B2490 48.214 142.756 99.822 1.00 45.27 O
ATOM 11 C2' A B2490 50.249 142.829 101.098 1.00 47.97 C
ATOM 12 O2' A B2490 49.411 142.811 102.234 1.00 51.65 O
ATOM 13 C1' A B2490 50.639 141.395 100.749 1.00 47.75 C
ATOM 14 N9 A B2490 51.925 141.039 101.332 1.00 46.34 N
ATOM 15 C8 A B2490 53.140 141.632 101.119 1.00 46.29 C
ATOM 16 N7 A B2490 54.112 141.108 101.819 1.00 47.20 N
ATOM 17 C5 A B2490 53.496 140.097 102.535 1.00 46.43 C
ATOM 18 C6 A B2490 53.983 139.184 103.466 1.00 46.71 C
ATOM 19 N6 A B2490 55.257 139.151 103.866 1.00 46.49 N
ATOM 20 N1 A B2490 53.106 138.298 103.992 1.00 46.51 N
ATOM 21 C2 A B2490 51.823 138.355 103.605 1.00 44.76 C
ATOM 22 N3 A B2490 51.246 139.181 102.745 1.00 44.85 N
ATOM 23 C4 A B2490 52.149 140.036 102.237 1.00 46.11 C
ATOM 24 P U B2491 46.999 143.588 99.170 1.00 45.47 P
ATOM 25 OP1 U B2491 47.541 144.565 98.187 1.00 43.21 O
ATOM 26 OP2 U B2491 46.104 144.058 100.253 1.00 43.71 O
ATOM 27 O5' U B2491 46.216 142.430 98.402 1.00 45.34 O
TER
Atoms:
OP1: (53.283,126.683,104.556)
OP2: (53.867,129.162,104.497)
C3': (49.368,128.209,101.768)
C1': (48.460,130.176,102.713)
C5': (50.453,127.473,104.016)
O4': (49.122,129.429,103.722)
C8: (50.453,131.762,102.886)
O2': (46.990,128.701,101.561)
C6: (49.522,134.658,101.152)
C5: (49.747,133.445,101.805)
C4: (48.731,132.508,101.762)
P: (52.896,128.084,104.786)
C4': (49.273,128.059,103.283)
C2': (48.293,129.254,101.503)
C2: (47.442,133.830,100.571)
N1: (48.333,134.826,100.532)
N3: (47.538,132.642,101.152)
N6: (50.412,135.647,101.110)
N7: (50.829,132.963,102.519)
N9: (49.193,131.421,102.467)
O5': (51.565,128.375,103.965)
O3': (49.041,126.998,101.086)
OP2: (53.867,129.162,104.497)
C3': (49.368,128.209,101.768)
C1': (48.460,130.176,102.713)
C5': (50.453,127.473,104.016)
O4': (49.122,129.429,103.722)
C8: (50.453,131.762,102.886)
O2': (46.990,128.701,101.561)
C6: (49.522,134.658,101.152)
C5: (49.747,133.445,101.805)
C4: (48.731,132.508,101.762)
P: (52.896,128.084,104.786)
C4': (49.273,128.059,103.283)
C2': (48.293,129.254,101.503)
C2: (47.442,133.830,100.571)
N1: (48.333,134.826,100.532)
N3: (47.538,132.642,101.152)
N6: (50.412,135.647,101.110)
N7: (50.829,132.963,102.519)
N9: (49.193,131.421,102.467)
O5': (51.565,128.375,103.965)
O3': (49.041,126.998,101.086)
OP1: (51.538,146.701,99.665)
OP2: (53.300,144.913,100.080)
C3': (49.547,143.276,99.822)
C1': (50.639,141.395,100.749)
C5': (51.680,143.258,98.409)
O4': (50.749,141.315,99.343)
C8: (53.140,141.632,101.119)
O2': (49.411,142.811,102.234)
C6: (53.983,139.184,103.466)
C5: (53.496,140.097,102.535)
C4: (52.149,140.036,102.237)
P: (52.432,145.653,99.146)
C4': (50.387,142.583,98.753)
C2': (50.249,142.829,101.098)
C2: (51.823,138.355,103.605)
N1: (53.106,138.298,103.992)
N3: (51.246,139.181,102.745)
N6: (55.257,139.151,103.866)
N7: (54.112,141.108,101.819)
N9: (51.925,141.039,101.332)
O5': (51.490,144.654,98.345)
O3': (48.214,142.756,99.822)
OP2: (53.300,144.913,100.080)
C3': (49.547,143.276,99.822)
C1': (50.639,141.395,100.749)
C5': (51.680,143.258,98.409)
O4': (50.749,141.315,99.343)
C8: (53.140,141.632,101.119)
O2': (49.411,142.811,102.234)
C6: (53.983,139.184,103.466)
C5: (53.496,140.097,102.535)
C4: (52.149,140.036,102.237)
P: (52.432,145.653,99.146)
C4': (50.387,142.583,98.753)
C2': (50.249,142.829,101.098)
C2: (51.823,138.355,103.605)
N1: (53.106,138.298,103.992)
N3: (51.246,139.181,102.745)
N6: (55.257,139.151,103.866)
N7: (54.112,141.108,101.819)
N9: (51.925,141.039,101.332)
O5': (51.490,144.654,98.345)
O3': (48.214,142.756,99.822)
Image (generated by PyMOL):